Wall clock time and date at job start Mon Mar 30 2020 07:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.47006 * 2 1 4 4 C 1.47906 * 110.99868 * 170.00317 * 3 2 1 5 5 C 1.54599 * 102.63149 * 94.67881 * 4 3 2 6 6 H 1.09006 * 110.74151 * 143.92470 * 5 4 3 7 7 C 1.52994 * 110.74560 * 267.26148 * 5 4 3 8 8 C 1.50695 * 109.47426 * 185.00179 * 7 5 4 9 9 H 1.08000 * 119.99918 * 0.02562 * 8 7 5 10 10 C 1.37874 * 120.00179 * 180.02562 * 8 7 5 11 11 N 1.31512 * 120.00346 * 359.97438 * 10 8 7 12 12 Si 1.86807 * 119.99924 * 180.02562 * 10 8 7 13 13 H 1.48490 * 109.47220 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47304 * 119.99950 * 12 10 8 15 15 H 1.48510 * 109.46826 * 239.99850 * 12 10 8 16 16 C 1.51568 * 102.81480 * 25.59837 * 5 4 3 17 17 C 1.38958 * 107.95503 * 343.80380 * 16 5 4 18 18 C 1.39390 * 119.10441 * 179.61013 * 17 16 5 19 19 C 1.37966 * 120.24426 * 0.27232 * 18 17 16 20 20 C 1.38220 * 120.29875 * 359.97438 * 19 18 17 21 21 C 1.38087 * 131.57354 * 163.80775 * 16 5 4 22 22 F 1.35102 * 119.98515 * 0.27122 * 21 16 5 23 23 H 1.08994 * 109.47103 * 299.99776 * 1 2 3 24 24 H 1.09003 * 109.47209 * 60.00446 * 1 2 3 25 25 H 1.09007 * 109.46776 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47010 * 239.99935 * 2 1 3 27 27 H 1.09003 * 109.47259 * 120.00108 * 2 1 3 28 28 H 1.08996 * 110.77181 * 212.96484 * 4 3 2 29 29 H 1.09001 * 110.77478 * 336.38995 * 4 3 2 30 30 H 1.08999 * 109.47553 * 305.00668 * 7 5 4 31 31 H 1.09002 * 109.46873 * 65.00461 * 7 5 4 32 32 H 0.97001 * 120.00348 * 179.97438 * 11 10 8 33 33 H 1.07989 * 119.87896 * 180.28851 * 18 17 16 34 34 H 1.08005 * 119.84603 * 180.02562 * 19 18 17 35 35 H 1.08003 * 120.07437 * 179.89661 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4784 1.4315 0.2397 5 6 4.0553 1.4779 -1.1939 6 1 4.9423 2.1102 -1.2328 7 6 4.3706 0.0679 -1.6970 8 6 5.0429 0.1534 -3.0430 9 1 5.2272 1.1172 -3.4942 10 6 5.4227 -0.9986 -3.6984 11 7 5.1987 -2.1722 -3.1488 12 14 6.2567 -0.8924 -5.3666 13 1 6.3927 0.5323 -5.7622 14 1 7.6024 -1.5154 -5.2878 15 1 5.4374 -1.6100 -6.3762 16 6 2.9227 2.0921 -1.9922 17 6 1.7650 2.0073 -1.2284 18 6 0.5740 2.5162 -1.7437 19 6 0.5487 3.0904 -2.9980 20 6 1.7036 3.1662 -3.7536 21 6 2.8927 2.6653 -3.2482 22 9 4.0230 2.7376 -3.9846 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 3.7505 2.3289 0.7953 29 1 3.8130 0.5354 0.7624 30 1 5.0344 -0.4302 -0.9904 31 1 3.4451 -0.5006 -1.7887 32 1 5.4656 -2.9827 -3.6101 33 1 -0.3321 2.4611 -1.1589 34 1 -0.3776 3.4830 -3.3908 35 1 1.6792 3.6150 -4.7357 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260337282.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:52 Heat of formation + Delta-G solvation = -12.294854 kcal Electronic energy + Delta-G solvation = -18744.044417 eV Core-core repulsion = 15849.340958 eV Total energy + Delta-G solvation = -2894.703459 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.13266 -40.47950 -36.46859 -33.91101 -32.34341 -30.12636 -29.07601 -28.94480 -26.17326 -23.15470 -22.71297 -22.22313 -20.46851 -19.58569 -16.97873 -16.31610 -16.00945 -15.39646 -15.19999 -14.78779 -14.49966 -14.39281 -14.12996 -13.25591 -12.90479 -12.59651 -12.21789 -12.14486 -11.77402 -11.68995 -11.58618 -11.50669 -11.06804 -10.90149 -10.84614 -10.50058 -10.37387 -9.98929 -9.58470 -9.26634 -8.81587 -8.35483 -8.04055 -7.54435 -5.99817 -4.00363 1.59177 1.69868 3.32105 3.39806 3.47059 3.88196 4.12151 4.48431 4.86306 5.07262 5.18912 5.25438 5.37362 5.40689 5.51351 5.53872 5.74809 5.76610 5.80954 5.89749 6.08441 6.13489 6.24419 6.39334 6.44040 6.47556 6.63031 6.66636 6.70501 6.85957 7.11483 7.30766 7.53576 7.61664 7.71136 8.00474 8.40486 9.07327 9.64443 11.11566 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021014 B = 0.009226 C = 0.007493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.144698 B = 3034.180506 C = 3735.859140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.045 3.955 3 N -0.490 5.490 4 C 0.048 3.952 5 C -0.071 4.071 6 H 0.080 0.920 7 C 0.035 3.965 8 C -0.519 4.519 9 H 0.070 0.930 10 C 0.058 3.942 11 N -0.898 5.898 12 Si 0.886 3.114 13 H -0.270 1.270 14 H -0.285 1.285 15 H -0.285 1.285 16 C -0.133 4.133 17 C 0.112 3.888 18 C -0.133 4.133 19 C -0.091 4.091 20 C -0.178 4.178 21 C 0.143 3.857 22 F -0.129 7.129 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.023 0.977 31 H 0.020 0.980 32 H 0.259 0.741 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.114 7.849 4.414 12.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.080 4.080 3 N -0.208 5.208 4 C -0.079 4.079 5 C -0.090 4.090 6 H 0.098 0.902 7 C -0.002 4.002 8 C -0.557 4.557 9 H 0.088 0.912 10 C -0.143 4.143 11 N -0.538 5.538 12 Si 0.714 3.286 13 H -0.195 1.195 14 H -0.211 1.211 15 H -0.211 1.211 16 C -0.137 4.137 17 C 0.016 3.984 18 C -0.153 4.153 19 C -0.110 4.110 20 C -0.198 4.198 21 C 0.123 3.877 22 F -0.107 7.107 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.041 0.959 31 H 0.038 0.962 32 H 0.068 0.932 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.310 7.872 4.829 13.114 hybrid contribution 1.110 -0.508 -1.755 2.138 sum -8.200 7.365 3.074 11.442 Atomic orbital electron populations 1.21902 0.95204 1.01537 1.02299 1.22344 0.95822 0.87287 1.02520 1.60388 1.15962 1.16310 1.28136 1.23299 0.84764 1.02476 0.97313 1.21564 0.95119 1.00930 0.91421 0.90177 1.19215 0.96870 0.87581 0.96530 1.21501 1.37771 0.93354 1.03093 0.91238 1.24974 0.96059 0.95464 0.97760 1.69967 1.48056 0.97316 1.38464 0.86602 0.79178 0.78326 0.84457 1.19469 1.21074 1.21122 1.21082 0.98452 1.00329 0.93808 1.19390 0.93204 0.96623 0.89187 1.20451 0.96438 1.01981 0.96390 1.20586 0.97384 0.99219 0.93769 1.20980 0.91788 1.05485 1.01503 1.17052 0.82707 0.99054 0.88932 1.91488 1.49212 1.93854 1.76191 0.92330 0.92205 0.92303 0.92265 0.90475 0.90220 0.89671 0.95921 0.96184 0.93189 0.85840 0.85395 0.85244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.77 37.16 0.36 -1.65 16 2 C 0.05 0.73 5.33 -3.82 -0.02 0.71 16 3 N -0.49 -8.29 5.06 -169.02 -0.85 -9.14 16 4 C 0.05 0.83 6.56 -2.43 -0.02 0.81 16 5 C -0.07 -1.48 2.96 -90.51 -0.27 -1.75 16 6 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 7 C 0.03 0.88 4.26 -27.89 -0.12 0.76 16 8 C -0.52 -14.65 8.56 -34.44 -0.29 -14.94 16 9 H 0.07 1.96 5.31 -52.49 -0.28 1.68 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 12 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 13 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 15 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 16 C -0.13 -2.71 5.28 -103.98 -0.55 -3.26 16 17 C 0.11 2.01 5.29 -83.41 -0.44 1.57 16 18 C -0.13 -2.02 8.55 -39.25 -0.34 -2.35 16 19 C -0.09 -1.29 10.02 -39.69 -0.40 -1.69 16 20 C -0.18 -2.92 10.04 -39.46 -0.40 -3.31 16 21 C 0.14 2.87 7.12 -39.51 -0.28 2.59 16 22 F -0.13 -2.87 14.84 2.25 0.03 -2.84 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.06 0.81 5.55 -51.93 -0.29 0.52 16 25 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 26 H 0.06 1.15 5.81 -51.93 -0.30 0.85 16 27 H 0.08 1.14 7.84 -51.93 -0.41 0.73 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.08 1.40 7.35 -51.93 -0.38 1.02 16 30 H 0.02 0.60 8.11 -51.93 -0.42 0.18 16 31 H 0.02 0.54 5.86 -51.93 -0.30 0.24 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.12 1.59 7.14 -52.49 -0.37 1.21 16 34 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 35 H 0.13 1.81 8.06 -52.48 -0.42 1.38 16 LS Contribution 283.20 15.07 4.27 4.27 Total: -1.00 -30.76 283.20 -8.12 -38.88 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -4.43 Total: -1.29 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -2.85 Total: -20.94 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.12 Total: -35.34 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.03 Total: -2.84 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.76 -8.12 -38.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260337282.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.583 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds