Wall clock time and date at job start Mon Mar 30 2020 06:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 110.88370 * 2 1 4 4 C 1.54353 * 110.82353 * 236.48705 * 2 1 3 5 5 C 1.51371 * 105.16673 * 215.42726 * 4 2 1 6 6 C 1.38224 * 109.76402 * 17.18818 * 5 4 2 7 7 C 1.38464 * 119.85816 * 179.97438 * 6 5 4 8 8 C 1.38158 * 120.27224 * 359.97438 * 7 6 5 9 9 C 1.38169 * 119.96614 * 0.02562 * 8 7 6 10 10 C 1.38377 * 119.90351 * 359.97438 * 9 8 7 11 11 F 1.35095 * 119.92165 * 180.02562 * 10 9 8 12 12 C 1.51373 * 109.75423 * 359.97438 * 6 5 4 13 13 C 1.50702 * 110.30138 * 101.73430 * 12 6 5 14 14 H 1.07998 * 120.00361 * 245.22878 * 13 12 6 15 15 C 1.37878 * 119.99557 * 65.22955 * 13 12 6 16 16 N 1.31516 * 120.00135 * 359.94066 * 15 13 12 17 17 Si 1.86801 * 119.99969 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46836 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47074 * 120.00202 * 17 15 13 20 20 H 1.48497 * 109.47279 * 240.00207 * 17 15 13 21 21 C 1.52997 * 110.30304 * 223.88758 * 12 6 5 22 22 N 1.46895 * 109.47019 * 184.16293 * 21 12 6 23 23 H 1.09001 * 109.47090 * 288.67372 * 1 2 3 24 24 H 1.08997 * 109.47372 * 48.67300 * 1 2 3 25 25 H 1.08999 * 109.47152 * 168.67621 * 1 2 3 26 26 H 1.08997 * 110.30545 * 96.50208 * 4 2 1 27 27 H 1.08998 * 110.29826 * 334.34845 * 4 2 1 28 28 H 1.08004 * 119.86623 * 180.02562 * 7 6 5 29 29 H 1.08002 * 120.01550 * 180.02562 * 8 7 6 30 30 H 1.07997 * 120.05018 * 180.02562 * 9 8 7 31 31 H 0.97001 * 119.99791 * 179.97438 * 16 15 13 32 32 H 1.09001 * 109.47253 * 304.16091 * 21 12 6 33 33 H 1.09005 * 109.47168 * 64.16067 * 21 12 6 34 34 H 1.00898 * 111.00238 * 61.76070 * 22 21 12 35 35 H 1.00905 * 110.99874 * 185.71898 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9185 1.0185 0.0000 4 6 2.0786 -0.7966 -1.2029 5 6 3.3322 -1.4734 -0.6911 6 6 3.3322 -1.4734 0.6912 7 6 4.3886 -2.0444 1.3805 8 6 5.4423 -2.6145 0.6924 9 6 5.4443 -2.6156 -0.6893 10 6 4.3901 -2.0458 -1.3811 11 9 4.3914 -2.0471 -2.7321 12 6 2.0789 -0.7960 1.2028 13 6 1.0734 -1.8256 1.6501 14 1 0.1346 -1.9269 1.1260 15 6 1.3523 -2.6384 2.7284 16 7 2.4961 -2.5159 3.3658 17 14 0.1057 -3.9142 3.2833 18 1 -1.0906 -3.8518 2.4057 19 1 0.7112 -5.2675 3.1984 20 1 -0.2941 -3.6380 4.6865 21 6 2.4199 0.1504 2.3556 22 7 1.1820 0.7213 2.9029 23 1 -0.3633 0.3290 0.9736 24 1 -0.3634 0.6786 -0.7717 25 1 -0.3633 -1.0076 -0.2018 26 1 2.3213 -0.1222 -2.0241 27 1 1.3517 -1.5415 -1.5263 28 1 4.3885 -2.0449 2.4605 29 1 6.2640 -3.0591 1.2343 30 1 6.2671 -3.0612 -1.2285 31 1 2.6920 -3.0875 4.1247 32 1 2.9417 -0.4020 3.1370 33 1 3.0595 0.9535 1.9893 34 1 0.5842 -0.0013 3.2752 35 1 1.3843 1.4196 3.6027 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260338474.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:15 Heat of formation + Delta-G solvation = -23.377473 kcal Electronic energy + Delta-G solvation = -19075.484439 eV Core-core repulsion = 16180.300401 eV Total energy + Delta-G solvation = -2895.184037 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.11602 -39.43480 -36.03213 -33.36838 -31.85572 -29.98001 -29.59287 -27.17778 -25.35420 -24.69235 -22.08488 -20.69904 -20.14736 -18.92157 -16.76554 -15.74763 -15.22669 -14.94206 -14.73455 -14.65397 -14.40496 -13.81663 -13.55936 -12.92039 -12.68059 -12.42889 -12.12557 -11.88958 -11.52221 -11.25739 -11.11433 -11.00415 -10.62285 -10.34448 -10.21575 -10.14511 -10.05350 -9.87234 -9.17593 -9.02821 -8.58590 -7.69864 -7.58895 -7.35088 -6.10400 -4.19287 2.14690 2.22998 3.19789 3.30054 3.33669 4.29636 4.63489 5.05622 5.14340 5.31465 5.58318 5.78807 5.86099 5.94620 6.07580 6.27085 6.29662 6.45424 6.56216 6.63458 6.67686 6.71695 6.83461 6.94344 6.99147 7.10541 7.19551 7.34346 7.40508 7.43533 7.53139 7.86530 7.88516 7.97353 8.24442 8.43681 8.61614 8.84242 9.43231 10.85984 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020018 B = 0.010553 C = 0.009028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.372881 B = 2652.606244 C = 3100.562444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.070 4.070 3 H 0.058 0.942 4 C -0.066 4.066 5 C -0.151 4.151 6 C 0.001 3.999 7 C -0.093 4.093 8 C -0.117 4.117 9 C -0.183 4.183 10 C 0.083 3.917 11 F -0.158 7.158 12 C 0.112 3.888 13 C -0.485 4.485 14 H 0.074 0.926 15 C 0.062 3.938 16 N -0.884 5.884 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.285 1.285 21 C 0.075 3.925 22 N -0.842 5.842 23 H 0.075 0.925 24 H 0.022 0.978 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.071 0.929 28 H 0.153 0.847 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.260 0.740 32 H 0.062 0.938 33 H 0.024 0.976 34 H 0.346 0.654 35 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.843 2.425 -2.436 3.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.088 4.088 3 H 0.076 0.924 4 C -0.103 4.103 5 C -0.152 4.152 6 C 0.000 4.000 7 C -0.112 4.112 8 C -0.135 4.135 9 C -0.202 4.202 10 C 0.064 3.936 11 F -0.137 7.137 12 C 0.111 3.889 13 C -0.523 4.523 14 H 0.092 0.908 15 C -0.140 4.140 16 N -0.522 5.522 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.211 1.211 21 C -0.056 4.056 22 N -0.370 5.370 23 H 0.094 0.906 24 H 0.041 0.959 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.170 0.830 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.043 0.957 34 H 0.160 0.840 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.783 2.577 -3.083 4.396 hybrid contribution -0.028 -1.501 0.913 1.757 sum 1.755 1.077 -2.169 2.991 Atomic orbital electron populations 1.21691 0.94910 0.99955 1.01291 1.21713 0.95958 0.97094 0.94068 0.92362 1.21029 0.93290 0.97861 0.98102 1.20695 0.95966 1.02578 0.95983 1.21015 0.93886 0.93900 0.91210 1.21405 0.91507 0.95757 1.02489 1.20890 0.99127 1.00713 0.92807 1.20697 0.98687 1.05590 0.95214 1.17310 0.96827 1.03732 0.75681 1.91373 1.96896 1.95209 1.30232 1.17819 0.88821 0.91660 0.90584 1.21266 1.01766 1.16676 1.12579 0.90848 1.24989 0.95323 0.97064 0.96581 1.69766 1.22120 1.39310 1.21048 0.86533 0.81618 0.81547 0.78389 1.19712 1.21231 1.21127 1.21754 0.90274 0.94583 0.98950 1.58767 1.18788 1.18881 1.40518 0.90626 0.95875 0.92985 0.92864 0.91033 0.83008 0.86672 0.86536 0.93016 0.92027 0.95743 0.83984 0.88038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 8.02 37.15 0.30 -2.00 16 2 C -0.07 -1.42 2.93 -89.22 -0.26 -1.68 16 3 H 0.06 1.17 7.82 -51.93 -0.41 0.76 16 4 C -0.07 -1.32 6.29 -26.84 -0.17 -1.49 16 5 C -0.15 -3.29 6.12 -104.14 -0.64 -3.93 16 6 C 0.00 0.03 4.64 -104.21 -0.48 -0.46 16 7 C -0.09 -2.04 8.67 -39.53 -0.34 -2.38 16 8 C -0.12 -2.25 10.04 -39.64 -0.40 -2.65 16 9 C -0.18 -3.48 10.02 -39.56 -0.40 -3.88 16 10 C 0.08 1.73 7.30 -39.37 -0.29 1.44 16 11 F -0.16 -3.17 17.25 2.25 0.04 -3.13 16 12 C 0.11 2.47 0.28 -155.78 -0.04 2.43 16 13 C -0.49 -11.54 6.15 -34.44 -0.21 -11.76 16 14 H 0.07 1.78 5.25 -52.49 -0.28 1.50 16 15 C 0.06 1.48 5.04 -17.82 -0.09 1.40 16 16 N -0.88 -21.38 8.04 55.43 0.45 -20.94 16 17 Si 0.89 19.68 29.54 -169.99 -5.02 14.66 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 21 C 0.08 1.61 5.26 -3.83 -0.02 1.59 16 22 N -0.84 -16.26 8.29 -10.37 -0.09 -16.35 16 23 H 0.07 1.48 6.96 -51.93 -0.36 1.12 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 1.01 6.20 -51.93 -0.32 0.69 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.07 1.44 7.70 -51.93 -0.40 1.04 16 28 H 0.15 3.46 5.78 -52.48 -0.30 3.16 16 29 H 0.12 1.88 8.06 -52.49 -0.42 1.45 16 30 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 31 H 0.26 6.17 8.31 -40.82 -0.34 5.83 16 32 H 0.06 1.43 5.66 -51.93 -0.29 1.14 16 33 H 0.02 0.51 8.01 -51.93 -0.42 0.09 16 34 H 0.35 7.13 7.80 -39.29 -0.31 6.82 16 35 H 0.31 5.28 9.08 -39.29 -0.36 4.93 16 LS Contribution 276.17 15.07 4.16 4.16 Total: -1.00 -24.35 276.17 -7.77 -32.12 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -4.27 Total: 12.83 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -3.04 Total: -23.36 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.36 Total: -37.28 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.04 Total: -3.13 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.66 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -24.35 -7.77 -32.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260338474.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.745 kcal (2) G-P(sol) polarization free energy of solvation -24.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds