Wall clock time and date at job start Mon Mar 30 2020 06:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 110.88370 * 2 1 4 4 C 1.54353 * 110.82353 * 236.48705 * 2 1 3 5 5 C 1.51371 * 105.16673 * 215.42726 * 4 2 1 6 6 C 1.38224 * 109.76402 * 17.18818 * 5 4 2 7 7 C 1.38464 * 119.85816 * 179.97438 * 6 5 4 8 8 C 1.38158 * 120.27224 * 359.97438 * 7 6 5 9 9 C 1.38169 * 119.96614 * 0.02562 * 8 7 6 10 10 C 1.38377 * 119.90351 * 359.97438 * 9 8 7 11 11 F 1.35095 * 119.92165 * 180.02562 * 10 9 8 12 12 C 1.51373 * 109.75423 * 359.97438 * 6 5 4 13 13 C 1.50702 * 110.30138 * 101.73430 * 12 6 5 14 14 H 1.07998 * 120.00361 * 245.22878 * 13 12 6 15 15 C 1.37878 * 119.99557 * 65.22955 * 13 12 6 16 16 N 1.31516 * 120.00135 * 359.94066 * 15 13 12 17 17 Si 1.86801 * 119.99969 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46836 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47074 * 120.00202 * 17 15 13 20 20 H 1.48497 * 109.47279 * 240.00207 * 17 15 13 21 21 C 1.52997 * 110.30304 * 223.88758 * 12 6 5 22 22 N 1.46895 * 109.47019 * 184.16293 * 21 12 6 23 23 H 1.09001 * 109.47090 * 288.67372 * 1 2 3 24 24 H 1.08997 * 109.47372 * 48.67300 * 1 2 3 25 25 H 1.08999 * 109.47152 * 168.67621 * 1 2 3 26 26 H 1.08997 * 110.30545 * 96.50208 * 4 2 1 27 27 H 1.08998 * 110.29826 * 334.34845 * 4 2 1 28 28 H 1.08004 * 119.86623 * 180.02562 * 7 6 5 29 29 H 1.08002 * 120.01550 * 180.02562 * 8 7 6 30 30 H 1.07997 * 120.05018 * 180.02562 * 9 8 7 31 31 H 0.97001 * 119.99791 * 179.97438 * 16 15 13 32 32 H 1.09001 * 109.47253 * 304.16091 * 21 12 6 33 33 H 1.09005 * 109.47168 * 64.16067 * 21 12 6 34 34 H 1.00898 * 111.00238 * 61.76070 * 22 21 12 35 35 H 1.00905 * 110.99874 * 185.71898 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9185 1.0185 0.0000 4 6 2.0786 -0.7966 -1.2029 5 6 3.3322 -1.4734 -0.6911 6 6 3.3322 -1.4734 0.6912 7 6 4.3886 -2.0444 1.3805 8 6 5.4423 -2.6145 0.6924 9 6 5.4443 -2.6156 -0.6893 10 6 4.3901 -2.0458 -1.3811 11 9 4.3914 -2.0471 -2.7321 12 6 2.0789 -0.7960 1.2028 13 6 1.0734 -1.8256 1.6501 14 1 0.1346 -1.9269 1.1260 15 6 1.3523 -2.6384 2.7284 16 7 2.4961 -2.5159 3.3658 17 14 0.1057 -3.9142 3.2833 18 1 -1.0906 -3.8518 2.4057 19 1 0.7112 -5.2675 3.1984 20 1 -0.2941 -3.6380 4.6865 21 6 2.4199 0.1504 2.3556 22 7 1.1820 0.7213 2.9029 23 1 -0.3633 0.3290 0.9736 24 1 -0.3634 0.6786 -0.7717 25 1 -0.3633 -1.0076 -0.2018 26 1 2.3213 -0.1222 -2.0241 27 1 1.3517 -1.5415 -1.5263 28 1 4.3885 -2.0449 2.4605 29 1 6.2640 -3.0591 1.2343 30 1 6.2671 -3.0612 -1.2285 31 1 2.6920 -3.0875 4.1247 32 1 2.9417 -0.4020 3.1370 33 1 3.0595 0.9535 1.9893 34 1 0.5842 -0.0013 3.2752 35 1 1.3843 1.4196 3.6027 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260338474.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:15 Heat of formation + Delta-G solvation = -35.312075 kcal Electronic energy + Delta-G solvation = -19076.001962 eV Core-core repulsion = 16180.300401 eV Total energy + Delta-G solvation = -2895.701561 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.69202 -41.05331 -37.63334 -35.04176 -33.59222 -31.54602 -31.21145 -28.84755 -26.91756 -26.45284 -23.72145 -22.29618 -21.73485 -20.62573 -18.41274 -17.42117 -16.86256 -16.54247 -16.43741 -16.27554 -16.02335 -15.43246 -15.19960 -14.55808 -14.30521 -14.02058 -13.74703 -13.46755 -13.12347 -12.96100 -12.84047 -12.65700 -12.33940 -11.96088 -11.90078 -11.80231 -11.62813 -11.48950 -10.81754 -10.73688 -10.41565 -9.30020 -9.22741 -8.98522 -7.91412 -6.04146 0.53183 0.64783 1.41976 1.49674 1.55795 2.48452 3.01191 3.27189 3.53369 3.75044 4.02770 4.25098 4.29025 4.36541 4.57421 4.69625 4.72435 4.87331 4.99883 5.00260 5.09793 5.14504 5.23868 5.35313 5.39990 5.48124 5.56595 5.71358 5.73934 5.84025 5.89514 6.06338 6.24389 6.34933 6.49658 6.77688 6.91117 7.15167 7.58372 9.01631 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020018 B = 0.010553 C = 0.009028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.372881 B = 2652.606244 C = 3100.562444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.068 4.068 3 H 0.059 0.941 4 C -0.063 4.063 5 C -0.169 4.169 6 C -0.024 4.024 7 C -0.111 4.111 8 C -0.112 4.112 9 C -0.175 4.175 10 C 0.072 3.928 11 F -0.155 7.155 12 C 0.106 3.894 13 C -0.489 4.489 14 H 0.065 0.935 15 C 0.032 3.968 16 N -0.891 5.891 17 Si 0.934 3.066 18 H -0.275 1.275 19 H -0.297 1.297 20 H -0.284 1.284 21 C 0.084 3.916 22 N -0.834 5.834 23 H 0.066 0.934 24 H 0.045 0.955 25 H 0.041 0.959 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.138 0.862 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.256 0.744 32 H 0.040 0.960 33 H 0.024 0.976 34 H 0.340 0.660 35 H 0.325 0.675 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.272 2.450 -3.130 4.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 H 0.077 0.923 4 C -0.100 4.100 5 C -0.170 4.170 6 C -0.025 4.025 7 C -0.129 4.129 8 C -0.130 4.130 9 C -0.194 4.194 10 C 0.053 3.947 11 F -0.134 7.134 12 C 0.105 3.895 13 C -0.527 4.527 14 H 0.083 0.917 15 C -0.168 4.168 16 N -0.530 5.530 17 Si 0.763 3.237 18 H -0.199 1.199 19 H -0.224 1.224 20 H -0.210 1.210 21 C -0.047 4.047 22 N -0.362 5.362 23 H 0.085 0.915 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.155 0.845 29 H 0.164 0.836 30 H 0.167 0.833 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.153 0.847 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.209 2.619 -3.774 5.098 hybrid contribution -0.107 -1.503 1.114 1.873 sum 2.102 1.116 -2.661 3.570 Atomic orbital electron populations 1.21588 0.93985 0.99883 1.01605 1.21696 0.96678 0.96798 0.93472 0.92297 1.21017 0.92661 0.97907 0.98392 1.20935 0.96904 1.03225 0.95930 1.21168 0.94557 0.94907 0.91881 1.21434 0.92581 0.96887 1.02025 1.21203 0.99042 0.99585 0.93172 1.21055 0.98848 1.04290 0.95186 1.17526 0.97183 1.04013 0.75966 1.91377 1.96901 1.95204 1.29917 1.17859 0.88639 0.91589 0.91372 1.21368 1.01854 1.17046 1.12427 0.91660 1.25392 0.96269 0.98175 0.96996 1.69880 1.22601 1.39487 1.21042 0.85878 0.80255 0.79627 0.77987 1.19929 1.22432 1.20969 1.21580 0.90666 0.94202 0.98253 1.58711 1.17765 1.18673 1.41054 0.91465 0.93567 0.93983 0.91282 0.91408 0.84468 0.83567 0.83267 0.93404 0.94150 0.95761 0.84676 0.86482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.16 8.02 71.98 0.58 -3.59 16 2 C -0.07 -2.69 2.93 -9.88 -0.03 -2.72 16 3 H 0.06 2.30 7.82 -2.38 -0.02 2.28 16 4 C -0.06 -2.45 6.29 30.52 0.19 -2.26 16 5 C -0.17 -7.19 6.12 -19.55 -0.12 -7.31 16 6 C -0.02 -1.07 4.64 -19.60 -0.09 -1.16 16 7 C -0.11 -4.78 8.67 22.30 0.19 -4.59 16 8 C -0.11 -4.07 10.04 22.23 0.22 -3.85 16 9 C -0.18 -6.18 10.02 22.29 0.22 -5.96 16 10 C 0.07 2.86 7.30 22.41 0.16 3.02 16 11 F -0.16 -5.88 17.25 44.97 0.78 -5.11 16 12 C 0.11 4.66 0.28 -53.01 -0.01 4.65 16 13 C -0.49 -23.22 6.15 25.60 0.16 -23.06 16 14 H 0.07 3.16 5.25 -2.91 -0.02 3.15 16 15 C 0.03 1.51 5.04 84.65 0.43 1.94 16 16 N -0.89 -43.31 8.04 21.45 0.17 -43.14 16 17 Si 0.93 40.42 29.54 68.60 2.03 42.44 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.30 -13.34 7.11 99.48 0.71 -12.63 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 21 C 0.08 3.59 5.26 86.30 0.45 4.05 16 22 N -0.83 -31.74 8.29 -186.73 -1.55 -33.29 16 23 H 0.07 2.56 6.96 -2.39 -0.02 2.54 16 24 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.04 1.60 6.20 -2.39 -0.01 1.59 16 26 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 27 H 0.07 2.66 7.70 -2.39 -0.02 2.65 16 28 H 0.14 6.30 5.78 -2.91 -0.02 6.28 16 29 H 0.15 4.32 8.06 -2.91 -0.02 4.29 16 30 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 31 H 0.26 12.25 8.31 -92.71 -0.77 11.48 16 32 H 0.04 1.90 5.66 -2.39 -0.01 1.89 16 33 H 0.02 1.01 8.01 -2.38 -0.02 0.99 16 34 H 0.34 13.89 7.80 -89.70 -0.70 13.19 16 35 H 0.32 10.75 9.08 -89.69 -0.81 9.94 16 Total: -1.00 -50.22 276.17 3.40 -46.82 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: -0.38 Total: 33.12 kcal Atomic # 6 Polarization: -43.20 SS G_CDS: 2.36 Total: -40.84 kcal Atomic # 7 Polarization: -75.05 SS G_CDS: -1.38 Total: -76.43 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 0.78 Total: -5.11 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.44 kcal Total: -50.22 3.40 -46.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260338474.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.504 kcal (2) G-P(sol) polarization free energy of solvation -50.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds