Wall clock time and date at job start Mon Mar 30 2020 06:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.88359 * 2 1 4 4 C 1.54348 * 110.82332 * 123.52040 * 2 1 3 5 5 C 1.51361 * 105.16844 * 144.57212 * 4 2 1 6 6 C 1.38217 * 109.76758 * 342.80990 * 5 4 2 7 7 C 1.38467 * 119.86928 * 180.02562 * 6 5 4 8 8 C 1.38158 * 120.26792 * 359.97438 * 7 6 5 9 9 C 1.38179 * 119.95969 * 0.02615 * 8 7 6 10 10 C 1.38374 * 119.91013 * 359.95600 * 9 8 7 11 11 F 1.35092 * 119.92035 * 180.02562 * 10 9 8 12 12 C 1.51374 * 109.74912 * 0.02562 * 6 5 4 13 13 C 1.50698 * 110.30311 * 258.16509 * 12 6 5 14 14 H 1.08005 * 119.99943 * 210.36001 * 13 12 6 15 15 C 1.37875 * 120.00292 * 30.36341 * 13 12 6 16 16 N 1.31511 * 119.99789 * 10.19458 * 15 13 12 17 17 Si 1.86796 * 120.00339 * 190.19354 * 15 13 12 18 18 H 1.48499 * 109.46938 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47333 * 120.00106 * 17 15 13 20 20 H 1.48504 * 109.46842 * 240.00106 * 17 15 13 21 21 C 1.53005 * 110.29956 * 136.11419 * 12 6 5 22 22 N 1.46905 * 109.47245 * 64.61071 * 21 12 6 23 23 H 1.08999 * 109.47107 * 187.78750 * 1 2 3 24 24 H 1.09000 * 109.47157 * 307.79324 * 1 2 3 25 25 H 1.09004 * 109.46966 * 67.78762 * 1 2 3 26 26 H 1.09000 * 110.29797 * 263.49418 * 4 2 1 27 27 H 1.08994 * 110.30219 * 25.64315 * 4 2 1 28 28 H 1.08001 * 119.87045 * 179.72198 * 7 6 5 29 29 H 1.07993 * 120.02310 * 180.02562 * 8 7 6 30 30 H 1.08006 * 120.04430 * 179.97438 * 9 8 7 31 31 H 0.97003 * 120.00149 * 180.02562 * 16 15 13 32 32 H 1.09003 * 109.46972 * 184.61084 * 21 12 6 33 33 H 1.08999 * 109.47441 * 304.60910 * 21 12 6 34 34 H 1.00900 * 110.99655 * 64.34509 * 22 21 12 35 35 H 1.00897 * 110.99974 * 188.29734 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0787 -0.7967 1.2027 5 6 3.3321 -1.4734 0.6909 6 6 3.3322 -1.4734 -0.6913 7 6 4.3886 -2.0443 -1.3808 8 6 5.4428 -2.6136 -0.6928 9 6 5.4448 -2.6147 0.6890 10 6 4.3908 -2.0446 1.3809 11 9 4.3927 -2.0452 2.7318 12 6 2.0789 -0.7959 -1.2028 13 6 1.0744 -1.8254 -1.6525 14 1 0.3847 -1.5942 -2.4508 15 6 1.0358 -3.0624 -1.0447 16 7 1.7296 -3.2783 0.0514 17 14 -0.0021 -4.4314 -1.7780 18 1 -0.6814 -3.9360 -3.0021 19 1 0.8703 -5.5815 -2.1265 20 1 -1.0207 -4.8648 -0.7881 21 6 2.4200 0.1506 -2.3556 22 7 2.9314 -0.6266 -3.4924 23 1 -0.3633 -1.0182 0.1392 24 1 -0.3633 0.6298 0.8121 25 1 -0.3633 0.3885 -0.9514 26 1 2.3214 -0.1223 2.0240 27 1 1.3518 -1.5416 1.5262 28 1 4.3866 -2.0483 -2.4608 29 1 6.2649 -3.0574 -1.2346 30 1 6.2680 -3.0597 1.2282 31 1 1.7028 -4.1487 0.4789 32 1 1.5235 0.6913 -2.6590 33 1 3.1799 0.8609 -2.0298 34 1 2.2209 -1.2426 -3.8581 35 1 3.2895 -0.0190 -4.2140 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260338477.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:19 Heat of formation + Delta-G solvation = -16.434092 kcal Electronic energy + Delta-G solvation = -19381.516612 eV Core-core repulsion = 16486.633662 eV Total energy + Delta-G solvation = -2894.882950 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -47.71183 -39.28290 -35.71635 -33.31200 -32.01727 -29.77452 -29.23761 -27.23859 -25.10228 -24.57514 -22.10425 -20.51801 -19.75707 -18.86807 -16.79432 -15.43619 -14.98368 -14.85121 -14.58816 -14.43614 -14.31431 -13.85349 -13.59286 -12.72716 -12.63314 -12.24198 -11.90971 -11.55139 -11.50250 -11.46330 -10.97769 -10.70620 -10.63396 -10.56680 -10.22512 -9.93975 -9.80001 -9.48850 -9.34588 -8.99838 -8.43658 -7.71809 -7.30797 -7.25311 -5.80694 -4.10023 2.58661 2.65267 3.26341 3.36510 3.37219 4.38457 4.98269 5.19226 5.50587 5.51007 5.67023 5.92307 5.99276 6.04200 6.24071 6.31694 6.40522 6.50321 6.60888 6.68290 6.70743 6.81068 6.89699 7.12841 7.16168 7.24514 7.36061 7.43277 7.52759 7.67218 7.72733 7.82014 8.02979 8.17072 8.22166 8.30296 8.38152 8.85842 9.50739 10.95878 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017927 B = 0.011852 C = 0.011150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.475171 B = 2361.866628 C = 2510.565459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.086 4.086 3 H 0.042 0.958 4 C -0.049 4.049 5 C -0.052 4.052 6 C 0.033 3.967 7 C -0.114 4.114 8 C -0.127 4.127 9 C -0.180 4.180 10 C 0.071 3.929 11 F -0.165 7.165 12 C 0.104 3.896 13 C -0.498 4.498 14 H 0.057 0.943 15 C 0.074 3.926 16 N -0.859 5.859 17 Si 0.883 3.117 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.288 1.288 21 C 0.082 3.918 22 N -0.838 5.838 23 H 0.069 0.931 24 H 0.021 0.979 25 H 0.040 0.960 26 H 0.032 0.968 27 H 0.094 0.906 28 H 0.130 0.870 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.259 0.741 32 H 0.012 0.988 33 H 0.045 0.955 34 H 0.347 0.653 35 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.075 4.340 -1.899 5.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.106 4.106 3 H 0.061 0.939 4 C -0.086 4.086 5 C -0.053 4.053 6 C 0.033 3.967 7 C -0.132 4.132 8 C -0.146 4.146 9 C -0.199 4.199 10 C 0.052 3.948 11 F -0.144 7.144 12 C 0.103 3.897 13 C -0.536 4.536 14 H 0.075 0.925 15 C -0.130 4.130 16 N -0.495 5.495 17 Si 0.712 3.288 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.214 1.214 21 C -0.049 4.049 22 N -0.366 5.366 23 H 0.088 0.912 24 H 0.040 0.960 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.113 0.887 28 H 0.148 0.852 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.070 0.930 32 H 0.030 0.970 33 H 0.064 0.936 34 H 0.161 0.839 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.609 3.873 -1.177 4.816 hybrid contribution -1.212 -0.721 -0.551 1.514 sum 1.398 3.152 -1.728 3.857 Atomic orbital electron populations 1.21490 0.95127 1.01694 0.98322 1.21975 0.95775 0.96073 0.96778 0.93910 1.20885 0.94704 0.97117 0.95890 1.20136 0.92640 0.97186 0.95385 1.20134 0.92454 0.92522 0.91614 1.20789 0.93244 0.98531 1.00645 1.20552 0.99188 1.01962 0.92878 1.20505 0.98697 1.05723 0.95018 1.17201 0.97286 1.04941 0.75386 1.91331 1.96997 1.95393 1.30700 1.17957 0.90363 0.91751 0.89596 1.20603 1.16860 0.97192 1.18944 0.92481 1.24894 0.95299 0.98282 0.94487 1.70144 1.40034 1.22534 1.16779 0.86684 0.80089 0.82849 0.79215 1.20029 1.21088 1.21424 1.21776 0.95580 0.94707 0.92790 1.58647 1.42903 1.23879 1.11211 0.91212 0.96035 0.94078 0.94966 0.88745 0.85245 0.87607 0.87454 0.92996 0.96986 0.93640 0.83923 0.87271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 8.23 37.16 0.31 -1.84 16 2 C -0.09 -1.80 3.08 -89.22 -0.27 -2.08 16 3 H 0.04 0.83 7.91 -51.93 -0.41 0.42 16 4 C -0.05 -1.10 5.69 -26.85 -0.15 -1.25 16 5 C -0.05 -1.22 4.19 -104.14 -0.44 -1.66 16 6 C 0.03 0.77 3.36 -104.21 -0.35 0.42 16 7 C -0.11 -2.51 9.47 -39.53 -0.37 -2.88 16 8 C -0.13 -2.63 10.04 -39.63 -0.40 -3.03 16 9 C -0.18 -3.82 10.02 -39.55 -0.40 -4.22 16 10 C 0.07 1.64 7.30 -39.37 -0.29 1.35 16 11 F -0.17 -3.76 17.25 2.25 0.04 -3.72 16 12 C 0.10 2.27 0.53 -155.79 -0.08 2.18 16 13 C -0.50 -11.72 5.08 -34.44 -0.17 -11.89 16 14 H 0.06 1.36 7.80 -52.48 -0.41 0.95 16 15 C 0.07 1.83 4.93 -17.82 -0.09 1.74 16 16 N -0.86 -22.14 7.81 55.43 0.43 -21.70 16 17 Si 0.88 20.04 29.55 -169.99 -5.02 15.02 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 C 0.08 1.56 5.63 -3.82 -0.02 1.54 16 22 N -0.84 -14.50 7.32 -10.36 -0.08 -14.58 16 23 H 0.07 1.52 6.87 -51.93 -0.36 1.17 16 24 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.04 0.77 8.11 -51.93 -0.42 0.35 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.09 2.29 6.61 -51.93 -0.34 1.95 16 28 H 0.13 2.77 6.42 -52.49 -0.34 2.43 16 29 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 30 H 0.11 2.00 8.06 -52.48 -0.42 1.58 16 31 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 32 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.35 6.21 8.09 -39.29 -0.32 5.89 16 35 H 0.32 4.52 9.08 -39.29 -0.36 4.16 16 LS Contribution 278.68 15.07 4.20 4.20 Total: -1.00 -25.74 278.68 -7.78 -33.53 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -4.62 Total: 8.86 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -2.73 Total: -21.61 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.36 Total: -36.28 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.04 Total: -3.72 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -25.74 -7.78 -33.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260338477.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.094 kcal (2) G-P(sol) polarization free energy of solvation -25.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds