Wall clock time and date at job start Mon Mar 30 2020 06:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 110.88359 * 2 1 4 4 C 1.54348 * 110.82332 * 123.52040 * 2 1 3 5 5 C 1.51361 * 105.16844 * 144.57212 * 4 2 1 6 6 C 1.38217 * 109.76758 * 342.80990 * 5 4 2 7 7 C 1.38467 * 119.86928 * 180.02562 * 6 5 4 8 8 C 1.38158 * 120.26792 * 359.97438 * 7 6 5 9 9 C 1.38179 * 119.95969 * 0.02615 * 8 7 6 10 10 C 1.38374 * 119.91013 * 359.95600 * 9 8 7 11 11 F 1.35092 * 119.92035 * 180.02562 * 10 9 8 12 12 C 1.51374 * 109.74912 * 0.02562 * 6 5 4 13 13 C 1.50698 * 110.30311 * 258.16509 * 12 6 5 14 14 H 1.08005 * 119.99943 * 210.36001 * 13 12 6 15 15 C 1.37875 * 120.00292 * 30.36341 * 13 12 6 16 16 N 1.31511 * 119.99789 * 10.19458 * 15 13 12 17 17 Si 1.86796 * 120.00339 * 190.19354 * 15 13 12 18 18 H 1.48499 * 109.46938 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47333 * 120.00106 * 17 15 13 20 20 H 1.48504 * 109.46842 * 240.00106 * 17 15 13 21 21 C 1.53005 * 110.29956 * 136.11419 * 12 6 5 22 22 N 1.46905 * 109.47245 * 64.61071 * 21 12 6 23 23 H 1.08999 * 109.47107 * 187.78750 * 1 2 3 24 24 H 1.09000 * 109.47157 * 307.79324 * 1 2 3 25 25 H 1.09004 * 109.46966 * 67.78762 * 1 2 3 26 26 H 1.09000 * 110.29797 * 263.49418 * 4 2 1 27 27 H 1.08994 * 110.30219 * 25.64315 * 4 2 1 28 28 H 1.08001 * 119.87045 * 179.72198 * 7 6 5 29 29 H 1.07993 * 120.02310 * 180.02562 * 8 7 6 30 30 H 1.08006 * 120.04430 * 179.97438 * 9 8 7 31 31 H 0.97003 * 120.00149 * 180.02562 * 16 15 13 32 32 H 1.09003 * 109.46972 * 184.61084 * 21 12 6 33 33 H 1.08999 * 109.47441 * 304.60910 * 21 12 6 34 34 H 1.00900 * 110.99655 * 64.34509 * 22 21 12 35 35 H 1.00897 * 110.99974 * 188.29734 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0787 -0.7967 1.2027 5 6 3.3321 -1.4734 0.6909 6 6 3.3322 -1.4734 -0.6913 7 6 4.3886 -2.0443 -1.3808 8 6 5.4428 -2.6136 -0.6928 9 6 5.4448 -2.6147 0.6890 10 6 4.3908 -2.0446 1.3809 11 9 4.3927 -2.0452 2.7318 12 6 2.0789 -0.7959 -1.2028 13 6 1.0744 -1.8254 -1.6525 14 1 0.3847 -1.5942 -2.4508 15 6 1.0358 -3.0624 -1.0447 16 7 1.7296 -3.2783 0.0514 17 14 -0.0021 -4.4314 -1.7780 18 1 -0.6814 -3.9360 -3.0021 19 1 0.8703 -5.5815 -2.1265 20 1 -1.0207 -4.8648 -0.7881 21 6 2.4200 0.1506 -2.3556 22 7 2.9314 -0.6266 -3.4924 23 1 -0.3633 -1.0182 0.1392 24 1 -0.3633 0.6298 0.8121 25 1 -0.3633 0.3885 -0.9514 26 1 2.3214 -0.1223 2.0240 27 1 1.3518 -1.5416 1.5262 28 1 4.3866 -2.0483 -2.4608 29 1 6.2649 -3.0574 -1.2346 30 1 6.2680 -3.0597 1.2282 31 1 1.7028 -4.1487 0.4789 32 1 1.5235 0.6913 -2.6590 33 1 3.1799 0.8609 -2.0298 34 1 2.2209 -1.2426 -3.8581 35 1 3.2895 -0.0190 -4.2140 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260338477.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:19 Heat of formation + Delta-G solvation = -29.551583 kcal Electronic energy + Delta-G solvation = -19382.085429 eV Core-core repulsion = 16486.633662 eV Total energy + Delta-G solvation = -2895.451767 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.47407 -40.96044 -37.36329 -34.81931 -33.86687 -31.42170 -30.89818 -28.92013 -26.74783 -26.34465 -23.70877 -22.20602 -21.41531 -20.60118 -18.53916 -17.10182 -16.76233 -16.57338 -16.21020 -16.16830 -15.98257 -15.45641 -15.19239 -14.44480 -14.22195 -13.90680 -13.59339 -13.24060 -13.16963 -13.09915 -12.78596 -12.43583 -12.36996 -12.29603 -11.92747 -11.61605 -11.46091 -11.15380 -11.00623 -10.73039 -10.29163 -9.15862 -9.01563 -8.96701 -7.65680 -5.98404 0.85778 0.98032 1.43121 1.51074 1.54998 2.52378 3.24863 3.37382 3.83905 3.98558 4.07556 4.28697 4.39919 4.44361 4.65761 4.76367 4.88337 4.92161 4.94783 5.03957 5.11836 5.19720 5.25944 5.47270 5.51881 5.60082 5.63467 5.73440 5.82185 5.91254 6.00822 6.05852 6.42026 6.47425 6.59891 6.66989 7.01497 7.03946 7.62209 9.04735 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017927 B = 0.011852 C = 0.011150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.475171 B = 2361.866628 C = 2510.565459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.086 4.086 3 H 0.059 0.941 4 C -0.047 4.047 5 C -0.073 4.073 6 C 0.022 3.978 7 C -0.126 4.126 8 C -0.125 4.125 9 C -0.183 4.183 10 C 0.048 3.952 11 F -0.169 7.169 12 C 0.094 3.906 13 C -0.485 4.485 14 H 0.054 0.946 15 C 0.038 3.962 16 N -0.874 5.874 17 Si 0.926 3.074 18 H -0.268 1.268 19 H -0.297 1.297 20 H -0.297 1.297 21 C 0.089 3.911 22 N -0.840 5.840 23 H 0.041 0.959 24 H 0.042 0.958 25 H 0.048 0.952 26 H 0.039 0.961 27 H 0.069 0.931 28 H 0.135 0.865 29 H 0.139 0.861 30 H 0.132 0.868 31 H 0.246 0.754 32 H 0.019 0.981 33 H 0.051 0.949 34 H 0.344 0.656 35 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.625 5.061 -2.979 6.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.106 4.106 3 H 0.078 0.922 4 C -0.084 4.084 5 C -0.075 4.075 6 C 0.021 3.979 7 C -0.144 4.144 8 C -0.143 4.143 9 C -0.202 4.202 10 C 0.029 3.971 11 F -0.149 7.149 12 C 0.094 3.906 13 C -0.523 4.523 14 H 0.072 0.928 15 C -0.163 4.163 16 N -0.512 5.512 17 Si 0.756 3.244 18 H -0.192 1.192 19 H -0.223 1.223 20 H -0.225 1.225 21 C -0.043 4.043 22 N -0.370 5.370 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.153 0.847 29 H 0.157 0.843 30 H 0.149 0.851 31 H 0.056 0.944 32 H 0.037 0.963 33 H 0.069 0.931 34 H 0.157 0.843 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.155 4.612 -2.280 6.036 hybrid contribution -1.356 -0.931 -0.228 1.661 sum 1.799 3.681 -2.508 4.804 Atomic orbital electron populations 1.21379 0.94368 1.00471 0.99605 1.22006 0.96406 0.96511 0.95630 0.92242 1.20835 0.94013 0.96773 0.96828 1.20361 0.93127 0.97989 0.96003 1.20346 0.93094 0.92902 0.91561 1.21020 0.93587 0.98720 1.01089 1.20932 0.99595 1.00921 0.92828 1.20827 0.98783 1.05081 0.95521 1.17565 0.98212 1.05858 0.75455 1.91309 1.97077 1.95500 1.30971 1.18074 0.89630 0.92009 0.90935 1.20739 1.16463 0.97267 1.17858 0.92755 1.25326 0.96278 0.99781 0.94913 1.70311 1.41502 1.21717 1.17622 0.86016 0.78757 0.81037 0.78638 1.19215 1.22348 1.22459 1.21633 0.96119 0.94170 0.92334 1.58543 1.42614 1.24246 1.11602 0.93948 0.93941 0.93247 0.94216 0.91268 0.84692 0.84325 0.85051 0.94351 0.96299 0.93073 0.84281 0.85096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.84 8.23 71.98 0.59 -3.25 16 2 C -0.09 -3.48 3.08 -9.89 -0.03 -3.51 16 3 H 0.06 2.19 7.91 -2.39 -0.02 2.18 16 4 C -0.05 -2.12 5.69 30.52 0.17 -1.94 16 5 C -0.07 -3.43 4.19 -19.55 -0.08 -3.51 16 6 C 0.02 0.97 3.36 -19.60 -0.07 0.91 16 7 C -0.13 -5.34 9.47 22.31 0.21 -5.13 16 8 C -0.12 -4.86 10.04 22.24 0.22 -4.63 16 9 C -0.18 -7.46 10.02 22.29 0.22 -7.23 16 10 C 0.05 2.20 7.30 22.41 0.16 2.37 16 11 F -0.17 -7.70 17.25 44.97 0.78 -6.92 16 12 C 0.09 3.98 0.53 -53.01 -0.03 3.95 16 13 C -0.49 -22.34 5.08 25.60 0.13 -22.21 16 14 H 0.05 2.50 7.80 -2.91 -0.02 2.48 16 15 C 0.04 1.87 4.93 84.65 0.42 2.29 16 16 N -0.87 -45.43 7.81 21.45 0.17 -45.27 16 17 Si 0.93 41.21 29.55 68.60 2.03 43.24 16 18 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 20 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 21 C 0.09 3.15 5.63 86.30 0.49 3.64 16 22 N -0.84 -27.09 7.32 -186.70 -1.37 -28.46 16 23 H 0.04 1.83 6.87 -2.39 -0.02 1.81 16 24 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.05 1.76 8.11 -2.39 -0.02 1.74 16 26 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.07 3.43 6.61 -2.39 -0.02 3.41 16 28 H 0.14 5.49 6.42 -2.91 -0.02 5.47 16 29 H 0.14 4.40 8.06 -2.91 -0.02 4.37 16 30 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 31 H 0.25 13.12 8.31 -92.71 -0.77 12.34 16 32 H 0.02 0.64 8.14 -2.39 -0.02 0.63 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.34 11.58 8.09 -89.69 -0.73 10.85 16 35 H 0.34 8.66 9.08 -89.70 -0.81 7.84 16 Total: -1.00 -53.40 278.68 3.59 -49.81 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: -0.43 Total: 25.85 kcal Atomic # 6 Polarization: -40.68 SS G_CDS: 2.41 Total: -38.26 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -1.20 Total: -73.72 kcal Atomic # 9 Polarization: -7.70 SS G_CDS: 0.78 Total: -6.92 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -53.40 3.59 -49.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260338477.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.261 kcal (2) G-P(sol) polarization free energy of solvation -53.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds