Wall clock time and date at job start Mon Mar 30 2020 06:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.72889 * 2 1 4 4 C 1.54343 * 110.82607 * 123.40623 * 2 1 3 5 5 C 1.51363 * 105.17239 * 91.87754 * 4 2 1 6 6 C 1.38224 * 109.76184 * 17.18782 * 5 4 2 7 7 C 1.38465 * 119.86303 * 179.97438 * 6 5 4 8 8 C 1.38158 * 120.27119 * 0.02562 * 7 6 5 9 9 C 1.38170 * 119.96418 * 0.02562 * 8 7 6 10 10 C 1.38376 * 119.90149 * 359.97438 * 9 8 7 11 11 F 1.35106 * 119.91596 * 179.97438 * 10 9 8 12 12 C 1.51373 * 109.75256 * 0.02562 * 6 5 4 13 13 C 1.50706 * 110.38728 * 101.77419 * 12 6 5 14 14 H 1.07998 * 119.99907 * 28.89139 * 13 12 6 15 15 C 1.37876 * 119.99916 * 208.89423 * 13 12 6 16 16 N 1.31515 * 119.99944 * 165.23940 * 15 13 12 17 17 Si 1.86795 * 120.00096 * 345.23023 * 15 13 12 18 18 H 1.48504 * 109.47156 * 95.74388 * 17 15 13 19 19 H 1.48498 * 109.47526 * 215.74545 * 17 15 13 20 20 H 1.48501 * 109.47566 * 335.74671 * 17 15 13 21 21 C 1.53000 * 110.30430 * 223.88569 * 12 6 5 22 22 N 1.46903 * 109.46950 * 291.05100 * 21 12 6 23 23 H 1.08997 * 109.47044 * 298.04581 * 1 2 3 24 24 H 1.08999 * 109.46769 * 58.05069 * 1 2 3 25 25 H 1.08998 * 109.46666 * 178.04818 * 1 2 3 26 26 H 1.08994 * 110.30592 * 210.80554 * 4 2 1 27 27 H 1.09013 * 110.30163 * 332.95853 * 4 2 1 28 28 H 1.08001 * 119.86407 * 179.97438 * 7 6 5 29 29 H 1.08004 * 120.01607 * 179.97438 * 8 7 6 30 30 H 1.07992 * 120.04822 * 179.97438 * 9 8 7 31 31 H 0.96993 * 119.99802 * 179.97438 * 16 15 13 32 32 H 1.09000 * 109.46998 * 51.04477 * 21 12 6 33 33 H 1.08995 * 109.47180 * 171.05371 * 21 12 6 34 34 H 1.00897 * 110.99920 * 184.79073 * 22 21 12 35 35 H 1.00906 * 111.00239 * 308.74666 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0788 -0.7942 1.2043 5 6 2.2643 -2.2076 0.6953 6 6 2.2643 -2.2103 -0.6870 7 6 2.4212 -3.4022 -1.3741 8 6 2.5774 -4.5887 -0.6838 9 6 2.5767 -4.5885 0.6979 10 6 2.4201 -3.3990 1.3875 11 9 2.4188 -3.3985 2.7385 12 6 2.0792 -0.7987 -1.2013 13 6 3.3989 -0.2267 -1.6513 14 1 4.1730 -0.8819 -2.0225 15 6 3.6180 1.1331 -1.5889 16 7 4.8395 1.6080 -1.6984 17 14 2.1799 2.3008 -1.3491 18 1 2.0450 2.6304 0.0927 19 1 2.4195 3.5464 -2.1213 20 1 0.9318 1.6540 -1.8278 21 6 1.0734 -0.7813 -2.3541 22 7 1.6583 -1.4493 -3.5245 23 1 -0.3633 0.4832 0.9070 24 1 -0.3633 0.5438 -0.8720 25 1 -0.3632 -1.0271 -0.0350 26 1 3.0339 -0.3800 1.5270 27 1 1.3621 -0.7791 2.0256 28 1 2.4208 -3.4044 -2.4541 29 1 2.6991 -5.5160 -1.2239 30 1 2.6982 -5.5152 1.2389 31 1 4.9936 2.5647 -1.6549 32 1 0.1662 -1.3050 -2.0526 33 1 0.8301 0.2502 -2.6084 34 1 1.0449 -1.3827 -4.3228 35 1 2.5704 -1.0737 -3.7369 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260338479.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:23 Heat of formation + Delta-G solvation = -4.654646 kcal Electronic energy + Delta-G solvation = -19125.893186 eV Core-core repulsion = 16231.521031 eV Total energy + Delta-G solvation = -2894.372155 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.30058 -39.92863 -36.44927 -33.47533 -32.31396 -30.27050 -29.85655 -27.72837 -26.24718 -23.98713 -22.61547 -21.39544 -20.38501 -19.29913 -16.88378 -15.90790 -15.62992 -15.51565 -14.99234 -14.92993 -14.65446 -14.25657 -13.54291 -13.29715 -12.93543 -12.73141 -12.56347 -12.16380 -11.81462 -11.76854 -11.57305 -11.30832 -10.82205 -10.70526 -10.53726 -10.16708 -10.06098 -9.83175 -9.33967 -9.13128 -8.59230 -7.93865 -7.87278 -7.63593 -6.25066 -4.22163 1.86839 1.94347 3.11958 3.22031 3.30138 4.22222 4.31358 4.84591 4.94798 5.14613 5.22056 5.47360 5.50757 5.68359 5.73429 5.83666 5.98242 6.03918 6.17046 6.23367 6.36604 6.40749 6.42916 6.54316 6.59853 6.62924 6.68990 6.81837 6.88779 7.07036 7.14360 7.49325 7.59707 7.62960 8.02099 8.35766 8.38648 8.82950 9.36823 10.85610 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.023796 B = 0.010209 C = 0.009225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.368825 B = 2741.969585 C = 3034.415390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 H 0.078 0.922 4 C -0.057 4.057 5 C -0.138 4.138 6 C 0.000 4.000 7 C -0.108 4.108 8 C -0.108 4.108 9 C -0.176 4.176 10 C 0.093 3.907 11 F -0.153 7.153 12 C 0.089 3.911 13 C -0.504 4.504 14 H 0.080 0.920 15 C 0.074 3.926 16 N -0.883 5.883 17 Si 0.874 3.126 18 H -0.282 1.282 19 H -0.304 1.304 20 H -0.242 1.242 21 C 0.063 3.937 22 N -0.846 5.846 23 H 0.046 0.954 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.142 0.858 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.265 0.735 32 H 0.046 0.954 33 H 0.031 0.969 34 H 0.318 0.682 35 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.597 -6.158 1.434 9.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.126 4.126 3 H 0.096 0.904 4 C -0.094 4.094 5 C -0.138 4.138 6 C 0.000 4.000 7 C -0.126 4.126 8 C -0.126 4.126 9 C -0.195 4.195 10 C 0.074 3.926 11 F -0.132 7.132 12 C 0.088 3.912 13 C -0.542 4.542 14 H 0.098 0.902 15 C -0.129 4.129 16 N -0.518 5.518 17 Si 0.706 3.294 18 H -0.210 1.210 19 H -0.233 1.233 20 H -0.167 1.167 21 C -0.067 4.067 22 N -0.376 5.376 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.160 0.840 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.128 0.872 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -7.481 -6.657 1.921 10.196 hybrid contribution -0.497 1.661 0.124 1.738 sum -7.977 -4.996 2.045 9.632 Atomic orbital electron populations 1.21986 0.95977 1.01588 1.01042 1.22332 0.94306 0.99670 0.96243 0.90429 1.20839 1.01131 0.90192 0.97261 1.20643 1.03579 0.93934 0.95687 1.20644 0.91978 0.95754 0.91665 1.21040 0.99309 0.90636 1.01648 1.20839 1.00578 0.98258 0.92890 1.20775 1.07421 0.96110 0.95200 1.17317 1.05435 0.93874 0.75961 1.91406 1.94403 1.97468 1.29903 1.18173 0.95364 0.87368 0.90283 1.20613 0.97522 0.92351 1.43685 0.90169 1.25072 0.95229 0.98223 0.94384 1.69948 1.19643 1.13755 1.48494 0.87335 0.84960 0.80097 0.76962 1.21044 1.23321 1.16748 1.22298 0.96326 0.95590 0.92533 1.58818 1.08151 1.63579 1.07045 0.93475 0.92253 0.92521 0.90091 0.91992 0.84017 0.86014 0.85930 0.92451 0.93548 0.95155 0.87175 0.82945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 7.55 37.16 0.28 -2.34 16 2 C -0.11 -2.24 1.86 -89.20 -0.17 -2.40 16 3 H 0.08 1.76 2.07 -51.93 -0.11 1.65 16 4 C -0.06 -1.16 6.28 -26.85 -0.17 -1.33 16 5 C -0.14 -2.82 6.12 -104.14 -0.64 -3.46 16 6 C 0.00 0.00 4.89 -104.21 -0.51 -0.51 16 7 C -0.11 -2.04 9.54 -39.53 -0.38 -2.41 16 8 C -0.11 -1.77 10.04 -39.64 -0.40 -2.16 16 9 C -0.18 -2.96 10.02 -39.56 -0.40 -3.36 16 10 C 0.09 1.78 7.30 -39.37 -0.29 1.49 16 11 F -0.15 -2.86 17.25 2.25 0.04 -2.82 16 12 C 0.09 1.93 0.25 -155.76 -0.04 1.89 16 13 C -0.50 -12.88 7.20 -34.44 -0.25 -13.12 16 14 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 15 C 0.07 1.97 5.32 -17.82 -0.09 1.87 16 16 N -0.88 -25.36 13.96 55.43 0.77 -24.58 16 17 Si 0.87 20.14 23.30 -169.99 -3.96 16.18 16 18 H -0.28 -6.48 6.67 56.52 0.38 -6.10 16 19 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.24 -5.07 3.29 56.52 0.19 -4.88 16 21 C 0.06 1.23 4.32 -3.82 -0.02 1.21 16 22 N -0.85 -15.02 7.81 -10.37 -0.08 -15.10 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 1.02 5.79 -51.93 -0.30 0.72 16 25 H 0.06 0.95 7.63 -51.93 -0.40 0.56 16 26 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 27 H 0.06 1.11 7.91 -51.92 -0.41 0.70 16 28 H 0.14 2.60 6.63 -52.49 -0.35 2.25 16 29 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 30 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.05 0.86 6.90 -51.93 -0.36 0.50 16 33 H 0.03 0.61 4.67 -51.93 -0.24 0.37 16 34 H 0.32 4.76 9.08 -39.29 -0.36 4.41 16 35 H 0.35 6.91 7.53 -39.29 -0.30 6.62 16 LS Contribution 267.08 15.07 4.02 4.02 Total: -1.00 -27.59 267.08 -6.57 -34.16 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -4.31 Total: 12.78 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: -3.06 Total: -24.63 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.69 Total: -39.69 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.04 Total: -2.82 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -3.96 Total: 16.18 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.59 -6.57 -34.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260338479.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.501 kcal (2) G-P(sol) polarization free energy of solvation -27.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds