Wall clock time and date at job start Mon Mar 30 2020 06:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.72889 * 2 1 4 4 C 1.54343 * 110.82607 * 123.40623 * 2 1 3 5 5 C 1.51363 * 105.17239 * 91.87754 * 4 2 1 6 6 C 1.38224 * 109.76184 * 17.18782 * 5 4 2 7 7 C 1.38465 * 119.86303 * 179.97438 * 6 5 4 8 8 C 1.38158 * 120.27119 * 0.02562 * 7 6 5 9 9 C 1.38170 * 119.96418 * 0.02562 * 8 7 6 10 10 C 1.38376 * 119.90149 * 359.97438 * 9 8 7 11 11 F 1.35106 * 119.91596 * 179.97438 * 10 9 8 12 12 C 1.51373 * 109.75256 * 0.02562 * 6 5 4 13 13 C 1.50706 * 110.38728 * 101.77419 * 12 6 5 14 14 H 1.07998 * 119.99907 * 28.89139 * 13 12 6 15 15 C 1.37876 * 119.99916 * 208.89423 * 13 12 6 16 16 N 1.31515 * 119.99944 * 165.23940 * 15 13 12 17 17 Si 1.86795 * 120.00096 * 345.23023 * 15 13 12 18 18 H 1.48504 * 109.47156 * 95.74388 * 17 15 13 19 19 H 1.48498 * 109.47526 * 215.74545 * 17 15 13 20 20 H 1.48501 * 109.47566 * 335.74671 * 17 15 13 21 21 C 1.53000 * 110.30430 * 223.88569 * 12 6 5 22 22 N 1.46903 * 109.46950 * 291.05100 * 21 12 6 23 23 H 1.08997 * 109.47044 * 298.04581 * 1 2 3 24 24 H 1.08999 * 109.46769 * 58.05069 * 1 2 3 25 25 H 1.08998 * 109.46666 * 178.04818 * 1 2 3 26 26 H 1.08994 * 110.30592 * 210.80554 * 4 2 1 27 27 H 1.09013 * 110.30163 * 332.95853 * 4 2 1 28 28 H 1.08001 * 119.86407 * 179.97438 * 7 6 5 29 29 H 1.08004 * 120.01607 * 179.97438 * 8 7 6 30 30 H 1.07992 * 120.04822 * 179.97438 * 9 8 7 31 31 H 0.96993 * 119.99802 * 179.97438 * 16 15 13 32 32 H 1.09000 * 109.46998 * 51.04477 * 21 12 6 33 33 H 1.08995 * 109.47180 * 171.05371 * 21 12 6 34 34 H 1.00897 * 110.99920 * 184.79073 * 22 21 12 35 35 H 1.00906 * 111.00239 * 308.74666 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0788 -0.7942 1.2043 5 6 2.2643 -2.2076 0.6953 6 6 2.2643 -2.2103 -0.6870 7 6 2.4212 -3.4022 -1.3741 8 6 2.5774 -4.5887 -0.6838 9 6 2.5767 -4.5885 0.6979 10 6 2.4201 -3.3990 1.3875 11 9 2.4188 -3.3985 2.7385 12 6 2.0792 -0.7987 -1.2013 13 6 3.3989 -0.2267 -1.6513 14 1 4.1730 -0.8819 -2.0225 15 6 3.6180 1.1331 -1.5889 16 7 4.8395 1.6080 -1.6984 17 14 2.1799 2.3008 -1.3491 18 1 2.0450 2.6304 0.0927 19 1 2.4195 3.5464 -2.1213 20 1 0.9318 1.6540 -1.8278 21 6 1.0734 -0.7813 -2.3541 22 7 1.6583 -1.4493 -3.5245 23 1 -0.3633 0.4832 0.9070 24 1 -0.3633 0.5438 -0.8720 25 1 -0.3632 -1.0271 -0.0350 26 1 3.0339 -0.3800 1.5270 27 1 1.3621 -0.7791 2.0256 28 1 2.4208 -3.4044 -2.4541 29 1 2.6991 -5.5160 -1.2239 30 1 2.6982 -5.5152 1.2389 31 1 4.9936 2.5647 -1.6549 32 1 0.1662 -1.3050 -2.0526 33 1 0.8301 0.2502 -2.6084 34 1 1.0449 -1.3827 -4.3228 35 1 2.5704 -1.0737 -3.7369 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260338479.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:23 Heat of formation + Delta-G solvation = -22.485757 kcal Electronic energy + Delta-G solvation = -19126.666400 eV Core-core repulsion = 16231.521031 eV Total energy + Delta-G solvation = -2895.145370 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.75230 -41.47094 -37.93518 -35.01902 -34.27103 -31.70561 -31.34038 -29.39564 -27.76923 -25.72939 -24.13359 -22.88570 -21.90929 -20.96360 -18.57570 -17.55548 -17.22692 -17.09780 -16.49422 -16.36186 -16.12646 -15.77681 -15.28600 -14.96604 -14.54806 -14.23280 -14.08632 -13.65199 -13.33951 -13.25473 -13.10038 -12.90631 -12.53081 -12.26685 -12.00797 -11.82657 -11.66870 -11.42055 -11.09710 -10.93090 -10.53254 -9.40430 -9.36645 -9.12981 -8.30503 -6.29879 0.41192 0.51368 1.27444 1.34828 1.45294 2.29220 2.83615 3.03651 3.43919 3.57344 3.69290 4.00730 4.13856 4.18100 4.30445 4.38898 4.57389 4.61673 4.65233 4.76564 4.84441 4.88815 4.99616 5.00191 5.11245 5.17290 5.21584 5.31275 5.39307 5.58059 5.64382 5.74456 5.99815 6.17822 6.32070 6.56560 6.71530 6.96877 7.32414 8.83774 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.023796 B = 0.010209 C = 0.009225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.368825 B = 2741.969585 C = 3034.415390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 H 0.058 0.942 4 C -0.059 4.059 5 C -0.158 4.158 6 C -0.026 4.026 7 C -0.118 4.118 8 C -0.096 4.096 9 C -0.166 4.166 10 C 0.079 3.921 11 F -0.154 7.154 12 C 0.086 3.914 13 C -0.490 4.490 14 H 0.035 0.965 15 C 0.021 3.979 16 N -0.938 5.938 17 Si 0.929 3.071 18 H -0.282 1.282 19 H -0.318 1.318 20 H -0.205 1.205 21 C 0.071 3.929 22 N -0.842 5.842 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.083 0.917 28 H 0.143 0.857 29 H 0.162 0.838 30 H 0.157 0.843 31 H 0.263 0.737 32 H 0.064 0.936 33 H 0.025 0.975 34 H 0.337 0.663 35 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.071 -7.989 1.667 12.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.132 4.132 3 H 0.075 0.925 4 C -0.096 4.096 5 C -0.159 4.159 6 C -0.026 4.026 7 C -0.136 4.136 8 C -0.114 4.114 9 C -0.184 4.184 10 C 0.060 3.940 11 F -0.133 7.133 12 C 0.084 3.916 13 C -0.527 4.527 14 H 0.053 0.947 15 C -0.177 4.177 16 N -0.577 5.577 17 Si 0.759 3.241 18 H -0.210 1.210 19 H -0.248 1.248 20 H -0.128 1.128 21 C -0.060 4.060 22 N -0.372 5.372 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.161 0.839 29 H 0.180 0.820 30 H 0.174 0.826 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.149 0.851 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.997 -8.520 2.147 13.309 hybrid contribution 0.370 2.051 0.060 2.085 sum -9.627 -6.469 2.207 11.807 Atomic orbital electron populations 1.21948 0.93022 1.02625 1.02453 1.22343 0.96783 0.98166 0.95917 0.92488 1.20818 1.00445 0.90380 0.97913 1.20748 1.04854 0.94420 0.95887 1.20668 0.93996 0.95904 0.92055 1.21229 0.99418 0.91021 1.01945 1.21259 0.98314 0.98855 0.92925 1.21196 1.05221 0.96504 0.95510 1.17570 1.05972 0.94334 0.76109 1.91402 1.94453 1.97494 1.29903 1.18130 0.93728 0.88199 0.91498 1.20715 0.98337 0.91638 1.42058 0.94653 1.25817 0.97382 1.00016 0.94525 1.70098 1.22129 1.13836 1.51647 0.86462 0.83452 0.77465 0.76673 1.21031 1.24803 1.12820 1.22172 0.96191 0.95611 0.92034 1.58753 1.07866 1.62992 1.07602 0.91411 0.91604 0.91576 0.92635 0.89890 0.83901 0.82024 0.82553 0.92807 0.91725 0.95746 0.85081 0.84246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.58 7.55 71.98 0.54 -4.03 16 2 C -0.11 -4.59 1.86 -9.87 -0.02 -4.61 16 3 H 0.06 2.55 2.07 -2.39 0.00 2.54 16 4 C -0.06 -2.34 6.28 30.51 0.19 -2.15 16 5 C -0.16 -6.33 6.12 -19.55 -0.12 -6.45 16 6 C -0.03 -1.05 4.89 -19.60 -0.10 -1.15 16 7 C -0.12 -4.20 9.54 22.30 0.21 -3.99 16 8 C -0.10 -2.79 10.04 22.23 0.22 -2.57 16 9 C -0.17 -4.97 10.02 22.29 0.22 -4.74 16 10 C 0.08 2.86 7.30 22.41 0.16 3.02 16 11 F -0.15 -5.46 17.25 44.97 0.78 -4.69 16 12 C 0.09 3.63 0.25 -52.99 -0.01 3.62 16 13 C -0.49 -25.74 7.20 25.60 0.18 -25.56 16 14 H 0.04 2.12 8.06 -2.91 -0.02 2.10 16 15 C 0.02 1.12 5.32 84.65 0.45 1.57 16 16 N -0.94 -56.58 13.96 21.45 0.30 -56.28 16 17 Si 0.93 42.04 23.30 68.60 1.60 43.64 16 18 H -0.28 -12.64 6.67 99.48 0.66 -11.98 16 19 H -0.32 -14.98 7.11 99.48 0.71 -14.27 16 20 H -0.20 -7.94 3.29 99.48 0.33 -7.61 16 21 C 0.07 2.61 4.32 86.30 0.37 2.98 16 22 N -0.84 -28.66 7.81 -186.72 -1.46 -30.12 16 23 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.07 2.00 5.79 -2.39 -0.01 1.98 16 25 H 0.07 1.99 7.63 -2.39 -0.02 1.97 16 26 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.08 2.87 7.91 -2.38 -0.02 2.85 16 28 H 0.14 4.98 6.63 -2.91 -0.02 4.97 16 29 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 30 H 0.16 3.61 8.06 -2.91 -0.02 3.59 16 31 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.06 2.17 6.90 -2.39 -0.02 2.16 16 33 H 0.02 0.93 4.67 -2.39 -0.01 0.91 16 34 H 0.34 9.33 9.08 -89.70 -0.81 8.51 16 35 H 0.34 13.37 7.53 -89.69 -0.68 12.69 16 Total: -1.00 -61.89 267.08 2.76 -59.13 By element: Atomic # 1 Polarization: 33.15 SS G_CDS: -0.77 Total: 32.38 kcal Atomic # 6 Polarization: -46.38 SS G_CDS: 2.32 Total: -44.06 kcal Atomic # 7 Polarization: -85.24 SS G_CDS: -1.16 Total: -86.40 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 0.78 Total: -4.69 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.60 Total: 43.64 kcal Total: -61.89 2.76 -59.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260338479.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.648 kcal (2) G-P(sol) polarization free energy of solvation -61.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds