Wall clock time and date at job start Mon Mar 30 2020 07:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48564 * 111.00163 * 2 1 4 4 C 1.54388 * 104.58987 * 159.03951 * 3 2 1 5 5 C 1.54261 * 105.06305 * 336.14741 * 4 3 2 6 6 H 1.08997 * 110.40571 * 241.06418 * 5 4 3 7 7 C 1.50701 * 110.32116 * 118.89557 * 5 4 3 8 8 H 1.08002 * 119.99761 * 244.35770 * 7 5 4 9 9 C 1.37871 * 119.99694 * 64.64333 * 7 5 4 10 10 N 1.31514 * 120.00482 * 359.71466 * 9 7 5 11 11 Si 1.86801 * 119.99746 * 179.72062 * 9 7 5 12 12 H 1.48504 * 109.47266 * 60.00049 * 11 9 7 13 13 H 1.48504 * 109.46970 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47383 * 299.99456 * 11 9 7 15 15 C 1.48558 * 111.00046 * 115.42022 * 2 1 3 16 16 H 1.09007 * 110.41056 * 319.74240 * 15 2 1 17 17 C 1.50699 * 110.41074 * 82.17551 * 15 2 1 18 18 C 1.38224 * 120.01551 * 19.90409 * 17 15 2 19 19 C 1.38220 * 120.02917 * 179.72014 * 18 17 15 20 20 C 1.38275 * 120.04711 * 0.54951 * 19 18 17 21 21 C 1.38169 * 120.02735 * 359.72532 * 20 19 18 22 22 C 1.38442 * 120.01615 * 200.17541 * 17 15 2 23 23 F 1.35100 * 120.02251 * 359.97438 * 22 17 15 24 24 H 1.09000 * 109.47104 * 304.58568 * 1 2 3 25 25 H 1.09009 * 109.46777 * 64.57787 * 1 2 3 26 26 H 1.08992 * 109.47916 * 184.57840 * 1 2 3 27 27 H 1.08997 * 110.41134 * 277.81429 * 3 2 1 28 28 H 1.08995 * 110.41034 * 40.14860 * 3 2 1 29 29 H 1.08997 * 110.31919 * 217.25065 * 4 3 2 30 30 H 1.08997 * 110.31833 * 95.04854 * 4 3 2 31 31 H 0.96995 * 120.00207 * 179.97438 * 10 9 7 32 32 H 1.07997 * 119.98305 * 359.97438 * 18 17 15 33 33 H 1.07995 * 119.97591 * 180.25349 * 19 18 17 34 34 H 1.08005 * 119.98063 * 179.74573 * 20 19 18 35 35 H 1.08005 * 120.01499 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2500 0.5345 5 6 3.4432 -0.0541 1.3585 6 1 3.6942 0.1536 2.3987 7 6 4.4179 -1.0432 0.7731 8 1 4.0597 -1.9747 0.3605 9 6 5.7675 -0.7614 0.7697 10 7 6.2038 0.3730 1.2721 11 14 6.9765 -1.9908 0.0511 12 1 6.6548 -2.2229 -1.3800 13 1 8.3562 -1.4539 0.1670 14 1 6.8797 -3.2727 0.7945 15 6 2.0014 -0.5953 1.2526 16 1 1.4097 -0.2713 2.1089 17 6 2.0102 -2.0993 1.1574 18 6 1.9632 -2.7141 -0.0797 19 6 1.9772 -4.0934 -0.1677 20 6 2.0266 -4.8600 0.9821 21 6 2.0679 -4.2478 2.2200 22 6 2.0597 -2.8659 2.3091 23 9 2.1006 -2.2662 3.5190 24 1 -0.3633 0.5833 0.8461 25 1 -0.3633 0.4412 -0.9282 26 1 -0.3634 -1.0243 0.0820 27 1 2.0080 1.7916 -1.0120 28 1 1.4087 2.0216 0.6586 29 1 3.6937 2.0994 1.1700 30 1 4.1483 1.1747 -0.2934 31 1 7.1533 0.5710 1.2700 32 1 1.9198 -2.1163 -0.9781 33 1 1.9446 -4.5728 -1.1348 34 1 2.0333 -5.9378 0.9123 35 1 2.1069 -4.8467 3.1179 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260355216.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:11 Heat of formation + Delta-G solvation = -10.455604 kcal Electronic energy + Delta-G solvation = -18919.467623 eV Core-core repulsion = 16024.843920 eV Total energy + Delta-G solvation = -2894.623703 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.18145 -39.17414 -37.33233 -33.13026 -31.37829 -30.59163 -29.84991 -27.16483 -25.51239 -23.80273 -22.34019 -21.73490 -19.85201 -19.20339 -17.15546 -16.27827 -15.68070 -15.18571 -14.99845 -14.74547 -14.36496 -14.18697 -13.52495 -13.37875 -12.81130 -12.56288 -12.40972 -12.01795 -11.81591 -11.47173 -11.21520 -11.09665 -10.90177 -10.69488 -10.60984 -10.32946 -10.15214 -9.76407 -9.37175 -8.76978 -8.34711 -8.15186 -7.88686 -7.81927 -5.94538 -3.94362 1.81858 1.88981 3.37744 3.41312 3.45330 4.23525 4.50776 4.58471 4.97688 5.30882 5.38916 5.44013 5.49128 5.63026 5.71296 5.79396 5.92207 5.94293 6.05685 6.16350 6.20494 6.29081 6.47519 6.62993 6.67214 6.73596 6.90467 7.00258 7.08944 7.19600 7.39878 7.52722 7.63413 7.74353 7.93440 8.03916 8.49248 9.06638 9.68591 11.15793 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.015876 B = 0.012229 C = 0.008804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.239202 B = 2289.000540 C = 3179.532361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.501 5.501 3 C 0.032 3.968 4 C -0.095 4.095 5 C 0.059 3.941 6 H 0.035 0.965 7 C -0.500 4.500 8 H 0.069 0.931 9 C 0.061 3.939 10 N -0.893 5.893 11 Si 0.885 3.115 12 H -0.277 1.277 13 H -0.290 1.290 14 H -0.278 1.278 15 C 0.100 3.900 16 H 0.042 0.958 17 C -0.047 4.047 18 C -0.064 4.064 19 C -0.142 4.142 20 C -0.113 4.113 21 C -0.162 4.162 22 C 0.095 3.905 23 F -0.143 7.143 24 H 0.019 0.981 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.027 0.973 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.258 0.742 32 H 0.141 0.859 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.890 -4.462 -1.627 10.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.225 5.225 3 C -0.096 4.096 4 C -0.133 4.133 5 C 0.040 3.960 6 H 0.053 0.947 7 C -0.538 4.538 8 H 0.087 0.913 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.713 3.287 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.204 1.204 15 C -0.008 4.008 16 H 0.060 0.940 17 C -0.048 4.048 18 C -0.082 4.082 19 C -0.161 4.161 20 C -0.131 4.131 21 C -0.181 4.181 22 C 0.076 3.924 23 F -0.122 7.122 24 H 0.038 0.962 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.158 0.842 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.562 -4.620 -2.028 10.812 hybrid contribution 0.575 -0.068 0.598 0.832 sum -8.987 -4.688 -1.430 10.237 Atomic orbital electron populations 1.22515 0.89874 1.01218 1.00047 1.65139 1.06047 1.15858 1.35437 1.23191 0.97944 0.88606 0.99852 1.22287 0.92272 0.98472 1.00310 1.19402 0.87579 0.92609 0.96368 0.94728 1.21288 0.90616 1.03516 1.38352 0.91340 1.24933 0.98335 0.95171 0.95529 1.69964 1.14389 1.22988 1.45902 0.86760 0.80286 0.81816 0.79842 1.20218 1.21535 1.20367 1.21716 0.99674 0.89726 0.89704 0.94045 1.19547 0.97891 0.95546 0.91842 1.20955 0.95980 0.93621 0.97665 1.21126 1.02651 0.94223 0.98054 1.20767 1.01216 0.99313 0.91850 1.20900 1.05675 0.92599 0.98893 1.17504 1.04038 0.90750 0.80137 1.91437 1.93949 1.84179 1.42633 0.96202 0.91920 0.91925 0.91415 0.95431 0.93732 0.90875 0.93187 0.84157 0.86359 0.86256 0.85835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.39 60.06 0.56 0.76 16 2 N -0.50 -9.49 4.03 -231.72 -0.93 -10.42 16 3 C 0.03 0.60 6.50 -2.18 -0.01 0.59 16 4 C -0.09 -2.18 5.86 -25.34 -0.15 -2.33 16 5 C 0.06 1.47 2.85 -90.39 -0.26 1.21 16 6 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 7 C -0.50 -13.43 7.76 -34.44 -0.27 -13.69 16 8 H 0.07 1.83 4.82 -52.49 -0.25 1.57 16 9 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 10 N -0.89 -25.69 12.60 55.43 0.70 -25.00 16 11 Si 0.88 21.73 29.54 -169.99 -5.02 16.71 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 13 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 15 C 0.10 2.11 2.14 -67.23 -0.14 1.96 16 16 H 0.04 0.88 7.74 -51.92 -0.40 0.47 16 17 C -0.05 -0.95 3.20 -104.55 -0.33 -1.29 16 18 C -0.06 -1.19 7.62 -39.59 -0.30 -1.49 16 19 C -0.14 -2.30 10.05 -39.57 -0.40 -2.70 16 20 C -0.11 -1.75 10.04 -39.59 -0.40 -2.15 16 21 C -0.16 -2.76 10.03 -39.52 -0.40 -3.16 16 22 C 0.10 1.90 7.25 -39.42 -0.29 1.62 16 23 F -0.14 -2.99 16.64 2.25 0.04 -2.95 16 24 H 0.02 0.29 7.97 -51.93 -0.41 -0.12 16 25 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 26 H 0.06 0.93 7.87 -51.93 -0.41 0.52 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.03 0.48 7.90 -51.93 -0.41 0.07 16 29 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.85 7.44 -51.93 -0.39 1.46 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.14 2.63 7.18 -52.49 -0.38 2.25 16 33 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 35 H 0.12 1.81 8.06 -52.48 -0.42 1.38 16 LS Contribution 287.94 15.07 4.34 4.34 Total: -1.00 -28.74 287.94 -8.10 -36.83 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -4.75 Total: -0.46 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -2.47 Total: -19.06 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: -0.23 Total: -35.42 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.04 Total: -2.95 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.74 -8.10 -36.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260355216.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.377 kcal (2) G-P(sol) polarization free energy of solvation -28.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds