Wall clock time and date at job start Mon Mar 30 2020 07:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48564 * 111.00163 * 2 1 4 4 C 1.54388 * 104.58987 * 159.03951 * 3 2 1 5 5 C 1.54261 * 105.06305 * 336.14741 * 4 3 2 6 6 H 1.08997 * 110.40571 * 241.06418 * 5 4 3 7 7 C 1.50701 * 110.32116 * 118.89557 * 5 4 3 8 8 H 1.08002 * 119.99761 * 244.35770 * 7 5 4 9 9 C 1.37871 * 119.99694 * 64.64333 * 7 5 4 10 10 N 1.31514 * 120.00482 * 359.71466 * 9 7 5 11 11 Si 1.86801 * 119.99746 * 179.72062 * 9 7 5 12 12 H 1.48504 * 109.47266 * 60.00049 * 11 9 7 13 13 H 1.48504 * 109.46970 * 179.97438 * 11 9 7 14 14 H 1.48499 * 109.47383 * 299.99456 * 11 9 7 15 15 C 1.48558 * 111.00046 * 115.42022 * 2 1 3 16 16 H 1.09007 * 110.41056 * 319.74240 * 15 2 1 17 17 C 1.50699 * 110.41074 * 82.17551 * 15 2 1 18 18 C 1.38224 * 120.01551 * 19.90409 * 17 15 2 19 19 C 1.38220 * 120.02917 * 179.72014 * 18 17 15 20 20 C 1.38275 * 120.04711 * 0.54951 * 19 18 17 21 21 C 1.38169 * 120.02735 * 359.72532 * 20 19 18 22 22 C 1.38442 * 120.01615 * 200.17541 * 17 15 2 23 23 F 1.35100 * 120.02251 * 359.97438 * 22 17 15 24 24 H 1.09000 * 109.47104 * 304.58568 * 1 2 3 25 25 H 1.09009 * 109.46777 * 64.57787 * 1 2 3 26 26 H 1.08992 * 109.47916 * 184.57840 * 1 2 3 27 27 H 1.08997 * 110.41134 * 277.81429 * 3 2 1 28 28 H 1.08995 * 110.41034 * 40.14860 * 3 2 1 29 29 H 1.08997 * 110.31919 * 217.25065 * 4 3 2 30 30 H 1.08997 * 110.31833 * 95.04854 * 4 3 2 31 31 H 0.96995 * 120.00207 * 179.97438 * 10 9 7 32 32 H 1.07997 * 119.98305 * 359.97438 * 18 17 15 33 33 H 1.07995 * 119.97591 * 180.25349 * 19 18 17 34 34 H 1.08005 * 119.98063 * 179.74573 * 20 19 18 35 35 H 1.08005 * 120.01499 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3869 0.0000 4 6 3.4433 1.2500 0.5345 5 6 3.4432 -0.0541 1.3585 6 1 3.6942 0.1536 2.3987 7 6 4.4179 -1.0432 0.7731 8 1 4.0597 -1.9747 0.3605 9 6 5.7675 -0.7614 0.7697 10 7 6.2038 0.3730 1.2721 11 14 6.9765 -1.9908 0.0511 12 1 6.6548 -2.2229 -1.3800 13 1 8.3562 -1.4539 0.1670 14 1 6.8797 -3.2727 0.7945 15 6 2.0014 -0.5953 1.2526 16 1 1.4097 -0.2713 2.1089 17 6 2.0102 -2.0993 1.1574 18 6 1.9632 -2.7141 -0.0797 19 6 1.9772 -4.0934 -0.1677 20 6 2.0266 -4.8600 0.9821 21 6 2.0679 -4.2478 2.2200 22 6 2.0597 -2.8659 2.3091 23 9 2.1006 -2.2662 3.5190 24 1 -0.3633 0.5833 0.8461 25 1 -0.3633 0.4412 -0.9282 26 1 -0.3634 -1.0243 0.0820 27 1 2.0080 1.7916 -1.0120 28 1 1.4087 2.0216 0.6586 29 1 3.6937 2.0994 1.1700 30 1 4.1483 1.1747 -0.2934 31 1 7.1533 0.5710 1.2700 32 1 1.9198 -2.1163 -0.9781 33 1 1.9446 -4.5728 -1.1348 34 1 2.0333 -5.9378 0.9123 35 1 2.1069 -4.8467 3.1179 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260355216.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:11 Heat of formation + Delta-G solvation = -26.476030 kcal Electronic energy + Delta-G solvation = -18920.162321 eV Core-core repulsion = 16024.843920 eV Total energy + Delta-G solvation = -2895.318401 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.72177 -40.69873 -38.78758 -35.06404 -32.85539 -32.36409 -31.21303 -28.81053 -27.20177 -25.51258 -23.77474 -23.15974 -21.53276 -20.89553 -18.76702 -17.98864 -17.16896 -16.83387 -16.61272 -16.32109 -16.24470 -15.55718 -14.93841 -14.84997 -14.55638 -14.08071 -13.85954 -13.57517 -13.44472 -13.21480 -12.78486 -12.63345 -12.52590 -12.40933 -12.32701 -12.00144 -11.66435 -11.58500 -11.25608 -10.74580 -10.44616 -9.55719 -9.36964 -9.29039 -8.06186 -6.10574 0.43290 0.53757 1.41570 1.42835 1.49402 2.47136 2.86746 3.10091 3.27384 3.59105 3.91369 4.07739 4.16997 4.20753 4.27185 4.40256 4.47842 4.58406 4.69345 4.73014 4.75250 4.89964 5.00302 5.05832 5.17647 5.30931 5.33953 5.40023 5.52938 5.64753 5.68710 5.80605 5.88148 6.10218 6.20216 6.27614 6.45993 6.96669 7.54568 9.04238 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.015876 B = 0.012229 C = 0.008804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.239202 B = 2289.000540 C = 3179.532361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.506 5.506 3 C 0.041 3.959 4 C -0.089 4.089 5 C 0.051 3.949 6 H -0.011 1.011 7 C -0.499 4.499 8 H 0.072 0.928 9 C 0.008 3.992 10 N -0.926 5.926 11 Si 0.942 3.058 12 H -0.266 1.266 13 H -0.290 1.290 14 H -0.276 1.276 15 C 0.110 3.890 16 H 0.031 0.969 17 C -0.071 4.071 18 C -0.076 4.076 19 C -0.136 4.136 20 C -0.103 4.103 21 C -0.163 4.163 22 C 0.060 3.940 23 F -0.160 7.160 24 H 0.024 0.976 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.044 0.956 29 H 0.031 0.969 30 H 0.044 0.956 31 H 0.256 0.744 32 H 0.136 0.864 33 H 0.153 0.847 34 H 0.162 0.838 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.112 -6.678 -3.274 13.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.229 5.229 3 C -0.086 4.086 4 C -0.127 4.127 5 C 0.032 3.968 6 H 0.007 0.993 7 C -0.537 4.537 8 H 0.090 0.910 9 C -0.189 4.189 10 N -0.567 5.567 11 Si 0.768 3.232 12 H -0.191 1.191 13 H -0.216 1.216 14 H -0.201 1.201 15 C 0.001 3.999 16 H 0.049 0.951 17 C -0.073 4.073 18 C -0.094 4.094 19 C -0.154 4.154 20 C -0.120 4.120 21 C -0.181 4.181 22 C 0.041 3.959 23 F -0.139 7.139 24 H 0.043 0.957 25 H 0.106 0.894 26 H 0.086 0.914 27 H 0.107 0.893 28 H 0.062 0.938 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.154 0.846 33 H 0.171 0.829 34 H 0.180 0.820 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.806 -6.843 -3.683 13.310 hybrid contribution 0.904 0.572 1.132 1.558 sum -9.902 -6.272 -2.551 11.995 Atomic orbital electron populations 1.22582 0.87239 1.02028 1.01543 1.65132 1.08493 1.15372 1.33935 1.23111 0.95086 0.89345 1.01095 1.22064 0.94708 0.97147 0.98827 1.19315 0.90143 0.93565 0.93795 0.99279 1.21585 0.91031 1.03753 1.37297 0.90975 1.25682 1.00167 0.96767 0.96305 1.70101 1.14354 1.24706 1.47543 0.85846 0.78158 0.79652 0.79522 1.19132 1.21573 1.20112 1.21418 0.96964 0.91020 0.90461 0.95104 1.19576 0.99917 0.94846 0.92925 1.21033 0.96729 0.95029 0.96630 1.21553 1.00593 0.93175 1.00053 1.21276 0.98711 1.01420 0.90636 1.21277 1.04566 0.91436 1.00869 1.17961 1.06067 0.92241 0.79623 1.91388 1.94315 1.84682 1.43488 0.95742 0.89382 0.91366 0.89314 0.93788 0.95050 0.93665 0.93533 0.84578 0.82913 0.82018 0.83607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.41 9.39 127.69 1.20 1.61 16 2 N -0.51 -18.64 4.03 -887.03 -3.57 -22.22 16 3 C 0.04 1.53 6.50 86.45 0.56 2.09 16 4 C -0.09 -4.22 5.86 31.49 0.18 -4.04 16 5 C 0.05 2.63 2.85 -10.65 -0.03 2.59 16 6 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 7 C -0.50 -27.35 7.76 25.60 0.20 -27.15 16 8 H 0.07 3.85 4.82 -2.91 -0.01 3.83 16 9 C 0.01 0.46 5.15 84.65 0.44 0.90 16 10 N -0.93 -55.23 12.60 21.45 0.27 -54.96 16 11 Si 0.94 44.78 29.54 68.60 2.03 46.81 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 14 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 15 C 0.11 4.71 2.14 44.31 0.09 4.81 16 16 H 0.03 1.36 7.74 -2.38 -0.02 1.34 16 17 C -0.07 -2.88 3.20 -19.82 -0.06 -2.94 16 18 C -0.08 -2.69 7.62 22.26 0.17 -2.52 16 19 C -0.14 -3.87 10.05 22.27 0.22 -3.64 16 20 C -0.10 -2.74 10.04 22.26 0.22 -2.52 16 21 C -0.16 -5.17 10.03 22.31 0.22 -4.95 16 22 C 0.06 2.40 7.25 22.38 0.16 2.56 16 23 F -0.16 -6.88 16.64 44.97 0.75 -6.13 16 24 H 0.02 0.67 7.97 -2.39 -0.02 0.66 16 25 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 26 H 0.07 1.88 7.87 -2.39 -0.02 1.86 16 27 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 28 H 0.04 1.49 7.90 -2.39 -0.02 1.47 16 29 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.04 2.36 7.44 -2.39 -0.02 2.34 16 31 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 32 H 0.14 4.86 7.18 -2.91 -0.02 4.84 16 33 H 0.15 3.28 8.06 -2.91 -0.02 3.25 16 34 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 35 H 0.15 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -64.32 287.94 4.13 -60.19 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 1.07 Total: 9.50 kcal Atomic # 6 Polarization: -36.78 SS G_CDS: 3.58 Total: -33.20 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -3.30 Total: -77.17 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.75 Total: -6.13 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.32 4.13 -60.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260355216.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.715 kcal (2) G-P(sol) polarization free energy of solvation -64.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds