Wall clock time and date at job start Mon Mar 30 2020 07:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48563 * 110.99677 * 2 1 4 4 C 1.54376 * 104.59491 * 200.96543 * 3 2 1 5 5 C 1.54252 * 105.06134 * 23.85091 * 4 3 2 6 6 H 1.09001 * 110.41098 * 118.94629 * 5 4 3 7 7 C 1.50704 * 110.32519 * 241.10570 * 5 4 3 8 8 H 1.08003 * 119.99883 * 115.63780 * 7 5 4 9 9 C 1.37877 * 119.99998 * 295.63904 * 7 5 4 10 10 N 1.31516 * 119.99872 * 0.02562 * 9 7 5 11 11 Si 1.86802 * 120.00128 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47026 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47233 * 119.99477 * 11 9 7 14 14 H 1.48497 * 109.47102 * 240.00444 * 11 9 7 15 15 C 1.48557 * 111.00050 * 244.58616 * 2 1 3 16 16 H 1.09009 * 110.51357 * 40.20185 * 15 2 1 17 17 C 1.50704 * 110.41012 * 277.81480 * 15 2 1 18 18 C 1.38217 * 120.01161 * 345.08171 * 17 15 2 19 19 C 1.38220 * 120.02450 * 180.22555 * 18 17 15 20 20 C 1.38271 * 120.05264 * 359.79838 * 19 18 17 21 21 C 1.38176 * 120.02452 * 359.94685 * 20 19 18 22 22 C 1.38442 * 120.01251 * 164.82755 * 17 15 2 23 23 F 1.35104 * 120.02527 * 0.02562 * 22 17 15 24 24 H 1.09010 * 109.47106 * 175.42065 * 1 2 3 25 25 H 1.08997 * 109.47397 * 295.41377 * 1 2 3 26 26 H 1.08996 * 109.47566 * 55.41647 * 1 2 3 27 27 H 1.09004 * 110.41097 * 82.18224 * 3 2 1 28 28 H 1.09002 * 110.50956 * 319.79219 * 3 2 1 29 29 H 1.09002 * 110.31757 * 264.95321 * 4 3 2 30 30 H 1.08998 * 110.32375 * 142.75414 * 4 3 2 31 31 H 0.97004 * 119.99278 * 179.97438 * 10 9 7 32 32 H 1.07993 * 119.98780 * 0.02562 * 18 17 15 33 33 H 1.08001 * 119.97742 * 179.76731 * 19 18 17 34 34 H 1.08001 * 119.98943 * 179.97438 * 20 19 18 35 35 H 1.07995 * 120.01616 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3870 0.0000 4 6 3.4431 1.2503 -0.5345 5 6 3.4431 -0.0537 -1.3586 6 1 3.6942 0.1540 -2.3988 7 6 4.4180 -1.0427 -0.7733 8 1 4.0599 -1.9743 -0.3607 9 6 5.7671 -0.7583 -0.7647 10 7 6.2031 0.3764 -1.2667 11 14 6.9755 -1.9839 -0.0386 12 1 6.2367 -3.1729 0.4573 13 1 7.9431 -2.4036 -1.0839 14 1 7.7070 -1.3500 1.0875 15 6 2.0014 -0.5952 -1.2527 16 1 1.4103 -0.2729 -2.1100 17 6 2.0104 -2.0992 -1.1575 18 6 1.8599 -2.7151 0.0707 19 6 1.8728 -4.0944 0.1589 20 6 2.0322 -4.8598 -0.9816 21 6 2.1775 -4.2463 -2.2112 22 6 2.1642 -2.8645 -2.3009 23 9 2.3068 -2.2636 -3.5025 24 1 -0.3634 -1.0245 -0.0821 25 1 -0.3634 0.4410 0.9282 26 1 -0.3634 0.5833 -0.8460 27 1 2.0078 1.7917 1.0121 28 1 1.4102 2.0229 -0.6591 29 1 4.1481 1.1751 0.2933 30 1 3.6934 2.0998 -1.1699 31 1 7.1522 0.5766 -1.2603 32 1 1.7354 -2.1184 0.9621 33 1 1.7589 -4.5748 1.1194 34 1 2.0425 -5.9375 -0.9115 35 1 2.3015 -4.8442 -3.1019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260355221.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:15 Heat of formation + Delta-G solvation = -10.391030 kcal Electronic energy + Delta-G solvation = -18935.080587 eV Core-core repulsion = 16040.459684 eV Total energy + Delta-G solvation = -2894.620903 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.14564 -39.17105 -37.32736 -33.13346 -31.37098 -30.60880 -29.82910 -27.16334 -25.51163 -23.78936 -22.34611 -21.73346 -19.83472 -19.21255 -17.13326 -16.29006 -15.66387 -15.17979 -14.99076 -14.73055 -14.35085 -14.18428 -13.55971 -13.36259 -12.80776 -12.55133 -12.39044 -12.00360 -11.81772 -11.46642 -11.22316 -11.11189 -10.91370 -10.71456 -10.55829 -10.30884 -10.14895 -9.75604 -9.37290 -8.74681 -8.35367 -8.17505 -7.89413 -7.79891 -5.94565 -3.94062 1.82793 1.89412 3.34704 3.42779 3.48362 4.23983 4.51124 4.58004 4.99563 5.31477 5.38996 5.44427 5.48884 5.62854 5.70840 5.79390 5.92256 5.94538 6.05727 6.16160 6.20137 6.29101 6.47744 6.63241 6.66827 6.74927 6.90042 7.00079 7.08580 7.20046 7.39999 7.53288 7.63530 7.74346 7.93696 8.04128 8.49394 9.07406 9.68936 11.15829 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.015837 B = 0.012336 C = 0.008847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.592471 B = 2269.291517 C = 3164.229096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.501 5.501 3 C 0.032 3.968 4 C -0.095 4.095 5 C 0.059 3.941 6 H 0.035 0.965 7 C -0.496 4.496 8 H 0.068 0.932 9 C 0.060 3.940 10 N -0.893 5.893 11 Si 0.884 3.116 12 H -0.272 1.272 13 H -0.287 1.287 14 H -0.286 1.286 15 C 0.100 3.900 16 H 0.042 0.958 17 C -0.047 4.047 18 C -0.070 4.070 19 C -0.141 4.141 20 C -0.114 4.114 21 C -0.162 4.162 22 C 0.099 3.901 23 F -0.142 7.142 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.020 0.980 27 H 0.067 0.933 28 H 0.027 0.973 29 H 0.072 0.928 30 H 0.044 0.956 31 H 0.257 0.743 32 H 0.140 0.860 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.035 -4.478 1.533 11.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.225 5.225 3 C -0.096 4.096 4 C -0.134 4.134 5 C 0.040 3.960 6 H 0.053 0.947 7 C -0.534 4.534 8 H 0.086 0.914 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.712 3.288 12 H -0.196 1.196 13 H -0.213 1.213 14 H -0.212 1.212 15 C -0.008 4.008 16 H 0.060 0.940 17 C -0.048 4.048 18 C -0.088 4.088 19 C -0.160 4.160 20 C -0.132 4.132 21 C -0.181 4.181 22 C 0.080 3.920 23 F -0.120 7.120 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.038 0.962 27 H 0.086 0.914 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.158 0.842 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.711 -4.645 1.938 10.938 hybrid contribution 0.619 -0.042 -0.574 0.845 sum -9.092 -4.687 1.364 10.319 Atomic orbital electron populations 1.22528 0.89887 1.01254 1.00067 1.65144 1.06034 1.15848 1.35424 1.23187 0.97955 0.88595 0.99851 1.22284 0.92281 0.98480 1.00317 1.19419 0.87567 0.92638 0.96401 0.94687 1.21322 0.90616 1.03400 1.38100 0.91372 1.24937 0.98355 0.95179 0.95571 1.69989 1.14232 1.22945 1.46071 0.86644 0.81439 0.81866 0.78837 1.19610 1.21300 1.21203 1.21715 0.99673 0.89749 0.89668 0.94035 1.19548 0.97781 0.95545 0.91930 1.20960 0.96657 0.93639 0.97523 1.21115 1.02554 0.94228 0.98058 1.20764 1.01132 0.99307 0.91996 1.20910 1.05494 0.92634 0.99013 1.17482 1.03317 0.90677 0.80561 1.91445 1.93253 1.84114 1.43236 0.91874 0.91912 0.96193 0.91415 0.95423 0.90884 0.93729 0.93316 0.84205 0.86408 0.86274 0.85817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 9.32 60.06 0.56 0.74 16 2 N -0.50 -9.47 3.96 -231.72 -0.92 -10.38 16 3 C 0.03 0.60 6.49 -2.18 -0.01 0.59 16 4 C -0.09 -2.19 5.86 -25.36 -0.15 -2.33 16 5 C 0.06 1.45 2.86 -90.39 -0.26 1.20 16 6 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 7 C -0.50 -13.37 7.77 -34.44 -0.27 -13.64 16 8 H 0.07 1.84 5.09 -52.48 -0.27 1.57 16 9 C 0.06 1.68 5.15 -17.82 -0.09 1.59 16 10 N -0.89 -25.74 12.59 55.43 0.70 -25.04 16 11 Si 0.88 21.79 29.54 -169.99 -5.02 16.77 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 15 C 0.10 2.11 2.10 -67.23 -0.14 1.97 16 16 H 0.04 0.87 7.88 -51.92 -0.41 0.46 16 17 C -0.05 -0.95 3.04 -104.55 -0.32 -1.27 16 18 C -0.07 -1.29 7.66 -39.60 -0.30 -1.59 16 19 C -0.14 -2.28 10.04 -39.58 -0.40 -2.68 16 20 C -0.11 -1.77 10.04 -39.59 -0.40 -2.16 16 21 C -0.16 -2.77 10.03 -39.51 -0.40 -3.17 16 22 C 0.10 1.99 7.23 -39.42 -0.29 1.71 16 23 F -0.14 -2.99 16.73 2.25 0.04 -2.96 16 24 H 0.06 0.92 7.59 -51.92 -0.39 0.53 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.02 0.29 7.98 -51.93 -0.41 -0.12 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.03 0.48 7.91 -51.93 -0.41 0.07 16 29 H 0.07 1.85 7.43 -51.93 -0.39 1.47 16 30 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.14 2.57 7.08 -52.49 -0.37 2.20 16 33 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 34 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 287.73 15.07 4.34 4.34 Total: -1.00 -28.90 287.73 -8.07 -36.98 By element: Atomic # 1 Polarization: 4.10 SS G_CDS: -4.75 Total: -0.64 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: -2.46 Total: -19.06 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: -0.22 Total: -35.42 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.04 Total: -2.96 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.90 -8.07 -36.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260355221.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.586 kcal (2) G-P(sol) polarization free energy of solvation -28.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds