Wall clock time and date at job start Mon Mar 30 2020 07:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48563 * 110.99677 * 2 1 4 4 C 1.54376 * 104.59491 * 200.96543 * 3 2 1 5 5 C 1.54252 * 105.06134 * 23.85091 * 4 3 2 6 6 H 1.09001 * 110.41098 * 118.94629 * 5 4 3 7 7 C 1.50704 * 110.32519 * 241.10570 * 5 4 3 8 8 H 1.08003 * 119.99883 * 115.63780 * 7 5 4 9 9 C 1.37877 * 119.99998 * 295.63904 * 7 5 4 10 10 N 1.31516 * 119.99872 * 0.02562 * 9 7 5 11 11 Si 1.86802 * 120.00128 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47026 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47233 * 119.99477 * 11 9 7 14 14 H 1.48497 * 109.47102 * 240.00444 * 11 9 7 15 15 C 1.48557 * 111.00050 * 244.58616 * 2 1 3 16 16 H 1.09009 * 110.51357 * 40.20185 * 15 2 1 17 17 C 1.50704 * 110.41012 * 277.81480 * 15 2 1 18 18 C 1.38217 * 120.01161 * 345.08171 * 17 15 2 19 19 C 1.38220 * 120.02450 * 180.22555 * 18 17 15 20 20 C 1.38271 * 120.05264 * 359.79838 * 19 18 17 21 21 C 1.38176 * 120.02452 * 359.94685 * 20 19 18 22 22 C 1.38442 * 120.01251 * 164.82755 * 17 15 2 23 23 F 1.35104 * 120.02527 * 0.02562 * 22 17 15 24 24 H 1.09010 * 109.47106 * 175.42065 * 1 2 3 25 25 H 1.08997 * 109.47397 * 295.41377 * 1 2 3 26 26 H 1.08996 * 109.47566 * 55.41647 * 1 2 3 27 27 H 1.09004 * 110.41097 * 82.18224 * 3 2 1 28 28 H 1.09002 * 110.50956 * 319.79219 * 3 2 1 29 29 H 1.09002 * 110.31757 * 264.95321 * 4 3 2 30 30 H 1.08998 * 110.32375 * 142.75414 * 4 3 2 31 31 H 0.97004 * 119.99278 * 179.97438 * 10 9 7 32 32 H 1.07993 * 119.98780 * 0.02562 * 18 17 15 33 33 H 1.08001 * 119.97742 * 179.76731 * 19 18 17 34 34 H 1.08001 * 119.98943 * 179.97438 * 20 19 18 35 35 H 1.07995 * 120.01616 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3870 0.0000 4 6 3.4431 1.2503 -0.5345 5 6 3.4431 -0.0537 -1.3586 6 1 3.6942 0.1540 -2.3988 7 6 4.4180 -1.0427 -0.7733 8 1 4.0599 -1.9743 -0.3607 9 6 5.7671 -0.7583 -0.7647 10 7 6.2031 0.3764 -1.2667 11 14 6.9755 -1.9839 -0.0386 12 1 6.2367 -3.1729 0.4573 13 1 7.9431 -2.4036 -1.0839 14 1 7.7070 -1.3500 1.0875 15 6 2.0014 -0.5952 -1.2527 16 1 1.4103 -0.2729 -2.1100 17 6 2.0104 -2.0992 -1.1575 18 6 1.8599 -2.7151 0.0707 19 6 1.8728 -4.0944 0.1589 20 6 2.0322 -4.8598 -0.9816 21 6 2.1775 -4.2463 -2.2112 22 6 2.1642 -2.8645 -2.3009 23 9 2.3068 -2.2636 -3.5025 24 1 -0.3634 -1.0245 -0.0821 25 1 -0.3634 0.4410 0.9282 26 1 -0.3634 0.5833 -0.8460 27 1 2.0078 1.7917 1.0121 28 1 1.4102 2.0229 -0.6591 29 1 4.1481 1.1751 0.2933 30 1 3.6934 2.0998 -1.1699 31 1 7.1522 0.5766 -1.2603 32 1 1.7354 -2.1184 0.9621 33 1 1.7589 -4.5748 1.1194 34 1 2.0425 -5.9375 -0.9115 35 1 2.3015 -4.8442 -3.1019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260355221.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:14 Heat of formation + Delta-G solvation = -26.545287 kcal Electronic energy + Delta-G solvation = -18935.781088 eV Core-core repulsion = 16040.459684 eV Total energy + Delta-G solvation = -2895.321404 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.69786 -40.69408 -38.78165 -35.07069 -32.84460 -32.38214 -31.19507 -28.80955 -27.19973 -25.50555 -23.77101 -23.16463 -21.50978 -20.90733 -18.75007 -18.01424 -17.14740 -16.83168 -16.61190 -16.30664 -16.23883 -15.55399 -14.96341 -14.84946 -14.55411 -14.07935 -13.82880 -13.55680 -13.44463 -13.21886 -12.82741 -12.64206 -12.52985 -12.36596 -12.32113 -11.99837 -11.65196 -11.57746 -11.26144 -10.73623 -10.46138 -9.57257 -9.37376 -9.27103 -8.06884 -6.10875 0.44157 0.54080 1.38700 1.41134 1.52161 2.46582 2.87255 3.09810 3.26892 3.60923 3.91740 4.07281 4.17788 4.21293 4.27283 4.40491 4.48094 4.58903 4.69712 4.73189 4.75655 4.90153 5.01010 5.05778 5.18000 5.30925 5.34772 5.40611 5.53167 5.64753 5.68499 5.80641 5.87948 6.10600 6.20729 6.27825 6.45549 6.96603 7.54187 9.03880 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.015837 B = 0.012336 C = 0.008847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.592471 B = 2269.291517 C = 3164.229096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.506 5.506 3 C 0.041 3.959 4 C -0.089 4.089 5 C 0.051 3.949 6 H -0.010 1.010 7 C -0.494 4.494 8 H 0.069 0.931 9 C 0.007 3.993 10 N -0.926 5.926 11 Si 0.941 3.059 12 H -0.263 1.263 13 H -0.288 1.288 14 H -0.282 1.282 15 C 0.110 3.890 16 H 0.032 0.968 17 C -0.071 4.071 18 C -0.080 4.080 19 C -0.135 4.135 20 C -0.104 4.104 21 C -0.163 4.163 22 C 0.063 3.937 23 F -0.160 7.160 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.024 0.976 27 H 0.088 0.912 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.031 0.969 31 H 0.256 0.744 32 H 0.139 0.861 33 H 0.153 0.847 34 H 0.162 0.838 35 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.328 -6.646 3.217 13.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.229 5.229 3 C -0.086 4.086 4 C -0.128 4.128 5 C 0.032 3.968 6 H 0.008 0.992 7 C -0.532 4.532 8 H 0.087 0.913 9 C -0.190 4.190 10 N -0.567 5.567 11 Si 0.768 3.232 12 H -0.187 1.187 13 H -0.215 1.215 14 H -0.208 1.208 15 C 0.001 3.999 16 H 0.050 0.950 17 C -0.072 4.072 18 C -0.098 4.098 19 C -0.153 4.153 20 C -0.121 4.121 21 C -0.182 4.182 22 C 0.044 3.956 23 F -0.139 7.139 24 H 0.088 0.912 25 H 0.106 0.894 26 H 0.043 0.957 27 H 0.107 0.893 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.156 0.844 33 H 0.171 0.829 34 H 0.179 0.821 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.025 -6.820 3.630 13.462 hybrid contribution 0.972 0.583 -1.117 1.591 sum -10.053 -6.237 2.512 12.095 Atomic orbital electron populations 1.22598 0.87196 1.02118 1.01567 1.65135 1.08531 1.15344 1.33909 1.23107 0.95066 0.89357 1.01093 1.22064 0.94743 0.97168 0.98825 1.19326 0.90135 0.93550 0.93828 0.99205 1.21579 0.91035 1.03543 1.37017 0.91256 1.25678 1.00177 0.96764 0.96375 1.70118 1.14291 1.24626 1.47678 0.85734 0.79356 0.80072 0.78031 1.18685 1.21482 1.20808 1.21417 0.96954 0.91021 0.90464 0.95024 1.19582 0.99790 0.94856 0.93018 1.21064 0.97204 0.95028 0.96544 1.21550 1.00552 0.93227 0.99977 1.21273 0.98683 1.01409 0.90782 1.21280 1.04504 0.91478 1.00940 1.17950 1.05385 0.92179 0.80090 1.91393 1.93655 1.84638 1.44171 0.91237 0.89376 0.95724 0.89325 0.93751 0.93722 0.95046 0.93554 0.84362 0.82907 0.82074 0.83674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.38 9.32 127.69 1.19 1.57 16 2 N -0.51 -18.56 3.96 -887.02 -3.51 -22.07 16 3 C 0.04 1.53 6.49 86.45 0.56 2.09 16 4 C -0.09 -4.25 5.86 31.49 0.18 -4.07 16 5 C 0.05 2.61 2.86 -10.65 -0.03 2.58 16 6 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 7 C -0.49 -27.16 7.77 25.60 0.20 -26.96 16 8 H 0.07 3.75 5.09 -2.91 -0.01 3.73 16 9 C 0.01 0.41 5.15 84.65 0.44 0.85 16 10 N -0.93 -55.31 12.59 21.45 0.27 -55.04 16 11 Si 0.94 45.01 29.54 68.60 2.03 47.04 16 12 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 13 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 14 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 15 C 0.11 4.71 2.10 44.32 0.09 4.80 16 16 H 0.03 1.38 7.88 -2.38 -0.02 1.36 16 17 C -0.07 -2.87 3.04 -19.82 -0.06 -2.93 16 18 C -0.08 -2.81 7.66 22.26 0.17 -2.64 16 19 C -0.14 -3.84 10.04 22.27 0.22 -3.61 16 20 C -0.10 -2.78 10.04 22.26 0.22 -2.56 16 21 C -0.16 -5.24 10.03 22.31 0.22 -5.02 16 22 C 0.06 2.53 7.23 22.38 0.16 2.70 16 23 F -0.16 -6.98 16.73 44.97 0.75 -6.23 16 24 H 0.07 1.88 7.59 -2.38 -0.02 1.86 16 25 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.02 0.67 7.98 -2.39 -0.02 0.65 16 27 H 0.09 2.92 8.14 -2.38 -0.02 2.90 16 28 H 0.04 1.50 7.91 -2.39 -0.02 1.48 16 29 H 0.04 2.34 7.43 -2.39 -0.02 2.32 16 30 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 32 H 0.14 4.81 7.08 -2.91 -0.02 4.79 16 33 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 34 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 35 H 0.15 3.91 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -64.68 287.73 4.18 -60.49 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 1.07 Total: 9.01 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 3.58 Total: -33.20 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -3.24 Total: -77.12 kcal Atomic # 9 Polarization: -6.98 SS G_CDS: 0.75 Total: -6.23 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -64.68 4.18 -60.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260355221.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.947 kcal (2) G-P(sol) polarization free energy of solvation -64.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds