Wall clock time and date at job start Mon Mar 30 2020 07:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48811 * 111.18414 * 2 1 4 4 C 1.54947 * 103.34733 * 159.50781 * 3 2 1 5 5 C 1.54596 * 102.91932 * 322.69240 * 4 3 2 6 6 H 1.09007 * 110.30326 * 140.87303 * 5 4 3 7 7 C 1.50694 * 110.30809 * 263.03980 * 5 4 3 8 8 H 1.07996 * 120.00242 * 115.72344 * 7 5 4 9 9 C 1.37875 * 120.00064 * 295.71668 * 7 5 4 10 10 N 1.31513 * 120.00200 * 0.02562 * 9 7 5 11 11 Si 1.86806 * 120.00120 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47383 * 89.99882 * 11 9 7 13 13 H 1.48498 * 109.46969 * 210.00289 * 11 9 7 14 14 H 1.48507 * 109.46696 * 330.00055 * 11 9 7 15 15 C 1.47894 * 111.00541 * 117.34159 * 2 1 3 16 16 H 1.09002 * 109.91875 * 333.70964 * 15 2 1 17 17 C 1.50702 * 109.92103 * 94.80133 * 15 2 1 18 18 C 1.38221 * 120.00788 * 23.47736 * 17 15 2 19 19 C 1.38226 * 120.02532 * 180.27942 * 18 17 15 20 20 C 1.38265 * 120.04947 * 359.44039 * 19 18 17 21 21 C 1.38183 * 120.02475 * 0.28283 * 20 19 18 22 22 C 1.38431 * 120.01798 * 203.20213 * 17 15 2 23 23 F 1.35104 * 120.02518 * 359.97223 * 22 17 15 24 24 H 1.09001 * 109.46852 * 302.65452 * 1 2 3 25 25 H 1.08999 * 109.47422 * 62.66035 * 1 2 3 26 26 H 1.08999 * 109.46756 * 182.65750 * 1 2 3 27 27 H 1.08997 * 110.51472 * 41.07889 * 3 2 1 28 28 H 1.08992 * 110.70364 * 278.02293 * 3 2 1 29 29 H 1.09005 * 110.71947 * 204.33555 * 4 3 2 30 30 H 1.08996 * 110.87243 * 81.12636 * 4 3 2 31 31 H 0.97004 * 120.00040 * 179.97438 * 10 9 7 32 32 H 1.08000 * 119.99099 * 0.02562 * 18 17 15 33 33 H 1.08002 * 119.97943 * 179.72632 * 19 18 17 34 34 H 1.08002 * 119.99150 * 180.25949 * 20 19 18 35 35 H 1.08004 * 120.00879 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0067 1.3875 0.0000 4 6 3.4527 1.2107 0.5278 5 6 3.2975 0.1058 1.5979 6 1 4.1460 -0.5775 1.5618 7 6 3.1761 0.7191 2.9690 8 1 2.2640 0.6004 3.5349 9 6 4.2297 1.4316 3.5013 10 7 5.3404 1.5764 2.8121 11 14 4.0796 2.1911 5.2013 12 1 4.5463 1.2180 6.2213 13 1 4.9127 3.4185 5.2704 14 1 2.6603 2.5407 5.4636 15 6 1.9991 -0.6341 1.2264 16 1 1.2745 -0.5414 2.0354 17 6 2.2939 -2.0889 0.9660 18 6 2.5319 -2.5259 -0.3235 19 6 2.7966 -3.8612 -0.5635 20 6 2.8350 -4.7592 0.4872 21 6 2.6030 -4.3235 1.7779 22 6 2.3320 -2.9870 2.0187 23 9 2.1055 -2.5599 3.2803 24 1 -0.3633 0.5545 0.8653 25 1 -0.3634 0.4720 -0.9128 26 1 -0.3633 -1.0266 0.0476 27 1 1.4272 2.0218 0.6708 28 1 2.0133 1.7983 -1.0096 29 1 3.8148 2.1353 0.9776 30 1 4.1201 0.8843 -0.2698 31 1 6.0815 2.0780 3.1865 32 1 2.5071 -1.8246 -1.1444 33 1 2.9781 -4.2027 -1.5719 34 1 3.0461 -5.8015 0.2991 35 1 2.6326 -5.0252 2.5984 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260355225.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:19 Heat of formation + Delta-G solvation = -16.493564 kcal Electronic energy + Delta-G solvation = -18653.028897 eV Core-core repulsion = 15758.143368 eV Total energy + Delta-G solvation = -2894.885529 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.19237 -39.11901 -37.43293 -33.16125 -31.42235 -30.50842 -30.00445 -27.41163 -25.48072 -23.73316 -22.46891 -21.71256 -19.98467 -19.17579 -17.09287 -16.43280 -15.73902 -15.53265 -14.94051 -14.72048 -14.33975 -14.12302 -13.59186 -13.37713 -12.72742 -12.63956 -12.46184 -12.25692 -11.86096 -11.45530 -11.18151 -11.01406 -10.86253 -10.68043 -10.51065 -10.37590 -10.21784 -9.89964 -9.65118 -8.84574 -8.40731 -8.36839 -8.00448 -7.83164 -6.02264 -4.06374 1.65481 1.71330 3.30560 3.37061 3.40187 4.07928 4.41414 4.60720 4.87594 5.19798 5.28130 5.33672 5.42902 5.64727 5.71667 5.80299 5.86053 5.94591 6.18248 6.21687 6.26352 6.30934 6.43170 6.54094 6.59187 6.67913 6.83604 6.90647 7.09607 7.16287 7.40620 7.55725 7.62661 7.73157 7.84187 7.93669 8.41548 8.95009 9.57421 11.06003 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020867 B = 0.008853 C = 0.007353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.508439 B = 3162.079940 C = 3806.844629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.522 5.522 3 C 0.039 3.961 4 C -0.100 4.100 5 C 0.058 3.942 6 H 0.036 0.964 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.064 3.936 10 N -0.887 5.887 11 Si 0.889 3.111 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.104 3.896 16 H 0.059 0.941 17 C -0.083 4.083 18 C -0.070 4.070 19 C -0.143 4.143 20 C -0.109 4.109 21 C -0.165 4.165 22 C 0.102 3.898 23 F -0.133 7.133 24 H 0.024 0.976 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.040 0.960 31 H 0.260 0.740 32 H 0.140 0.860 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.197 -7.457 -6.226 11.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.245 5.245 3 C -0.088 4.088 4 C -0.139 4.139 5 C 0.039 3.961 6 H 0.054 0.946 7 C -0.548 4.548 8 H 0.072 0.928 9 C -0.138 4.138 10 N -0.525 5.525 11 Si 0.717 3.283 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.200 1.200 15 C -0.004 4.004 16 H 0.077 0.923 17 C -0.084 4.084 18 C -0.088 4.088 19 C -0.161 4.161 20 C -0.127 4.127 21 C -0.183 4.183 22 C 0.082 3.918 23 F -0.111 7.111 24 H 0.043 0.957 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.158 0.842 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.883 -7.625 -6.631 11.693 hybrid contribution -0.335 0.869 1.963 2.173 sum -6.218 -6.756 -4.668 10.300 Atomic orbital electron populations 1.22435 0.89421 1.01008 1.00131 1.64540 1.06653 1.16068 1.37259 1.23257 0.97960 0.88520 0.99091 1.22427 0.92064 1.02187 0.97190 1.19459 0.90041 0.92384 0.94190 0.94615 1.21161 1.00234 1.33045 1.00371 0.92751 1.24931 0.95255 0.96301 0.97311 1.69972 1.04151 1.41122 1.37252 0.86644 0.78020 0.78762 0.84918 1.20623 1.21218 1.19971 1.21558 0.99855 0.88991 0.89999 0.92271 1.20116 0.99924 0.95828 0.92563 1.21008 0.96125 0.95138 0.96521 1.21161 1.02361 0.93734 0.98848 1.20830 1.00490 0.99474 0.91939 1.21007 1.04956 0.94090 0.98290 1.17634 1.02133 0.92517 0.79488 1.91516 1.91810 1.90537 1.37251 0.95694 0.92063 0.92288 0.94099 0.91859 0.90033 0.94135 0.92981 0.84208 0.86174 0.86027 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.41 60.06 0.57 0.87 16 2 N -0.52 -9.83 3.91 -231.93 -0.91 -10.74 16 3 C 0.04 0.76 6.58 -1.74 -0.01 0.75 16 4 C -0.10 -2.32 6.17 -24.87 -0.15 -2.47 16 5 C 0.06 1.46 2.50 -90.42 -0.23 1.23 16 6 H 0.04 1.00 7.68 -51.92 -0.40 0.60 16 7 C -0.51 -14.00 8.49 -34.44 -0.29 -14.29 16 8 H 0.05 1.51 7.34 -52.49 -0.39 1.13 16 9 C 0.06 1.77 5.09 -17.82 -0.09 1.68 16 10 N -0.89 -25.34 12.15 55.43 0.67 -24.67 16 11 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 15 C 0.10 2.24 2.09 -67.80 -0.14 2.09 16 16 H 0.06 1.37 6.67 -51.93 -0.35 1.02 16 17 C -0.08 -1.63 4.84 -104.56 -0.51 -2.14 16 18 C -0.07 -1.19 9.33 -39.59 -0.37 -1.56 16 19 C -0.14 -2.05 10.04 -39.58 -0.40 -2.45 16 20 C -0.11 -1.52 10.04 -39.59 -0.40 -1.92 16 21 C -0.16 -2.62 10.03 -39.51 -0.40 -3.02 16 22 C 0.10 1.98 7.24 -39.42 -0.29 1.70 16 23 F -0.13 -2.85 16.60 2.25 0.04 -2.81 16 24 H 0.02 0.41 8.01 -51.93 -0.42 -0.01 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.04 0.82 7.97 -51.93 -0.41 0.41 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 2.08 6.77 -51.93 -0.35 1.73 16 30 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.14 2.34 7.24 -52.49 -0.38 1.96 16 33 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.13 1.73 8.06 -52.48 -0.42 1.30 16 LS Contribution 292.11 15.07 4.40 4.40 Total: -1.00 -28.75 292.11 -8.31 -37.06 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -4.79 Total: -0.21 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -2.70 Total: -19.53 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: -0.23 Total: -35.41 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.04 Total: -2.81 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.75 -8.31 -37.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260355225.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.566 kcal (2) G-P(sol) polarization free energy of solvation -28.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds