Wall clock time and date at job start Mon Mar 30 2020 07:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.48811 * 111.18414 * 2 1 4 4 C 1.54947 * 103.34733 * 159.50781 * 3 2 1 5 5 C 1.54596 * 102.91932 * 322.69240 * 4 3 2 6 6 H 1.09007 * 110.30326 * 140.87303 * 5 4 3 7 7 C 1.50694 * 110.30809 * 263.03980 * 5 4 3 8 8 H 1.07996 * 120.00242 * 115.72344 * 7 5 4 9 9 C 1.37875 * 120.00064 * 295.71668 * 7 5 4 10 10 N 1.31513 * 120.00200 * 0.02562 * 9 7 5 11 11 Si 1.86806 * 120.00120 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47383 * 89.99882 * 11 9 7 13 13 H 1.48498 * 109.46969 * 210.00289 * 11 9 7 14 14 H 1.48507 * 109.46696 * 330.00055 * 11 9 7 15 15 C 1.47894 * 111.00541 * 117.34159 * 2 1 3 16 16 H 1.09002 * 109.91875 * 333.70964 * 15 2 1 17 17 C 1.50702 * 109.92103 * 94.80133 * 15 2 1 18 18 C 1.38221 * 120.00788 * 23.47736 * 17 15 2 19 19 C 1.38226 * 120.02532 * 180.27942 * 18 17 15 20 20 C 1.38265 * 120.04947 * 359.44039 * 19 18 17 21 21 C 1.38183 * 120.02475 * 0.28283 * 20 19 18 22 22 C 1.38431 * 120.01798 * 203.20213 * 17 15 2 23 23 F 1.35104 * 120.02518 * 359.97223 * 22 17 15 24 24 H 1.09001 * 109.46852 * 302.65452 * 1 2 3 25 25 H 1.08999 * 109.47422 * 62.66035 * 1 2 3 26 26 H 1.08999 * 109.46756 * 182.65750 * 1 2 3 27 27 H 1.08997 * 110.51472 * 41.07889 * 3 2 1 28 28 H 1.08992 * 110.70364 * 278.02293 * 3 2 1 29 29 H 1.09005 * 110.71947 * 204.33555 * 4 3 2 30 30 H 1.08996 * 110.87243 * 81.12636 * 4 3 2 31 31 H 0.97004 * 120.00040 * 179.97438 * 10 9 7 32 32 H 1.08000 * 119.99099 * 0.02562 * 18 17 15 33 33 H 1.08002 * 119.97943 * 179.72632 * 19 18 17 34 34 H 1.08002 * 119.99150 * 180.25949 * 20 19 18 35 35 H 1.08004 * 120.00879 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0067 1.3875 0.0000 4 6 3.4527 1.2107 0.5278 5 6 3.2975 0.1058 1.5979 6 1 4.1460 -0.5775 1.5618 7 6 3.1761 0.7191 2.9690 8 1 2.2640 0.6004 3.5349 9 6 4.2297 1.4316 3.5013 10 7 5.3404 1.5764 2.8121 11 14 4.0796 2.1911 5.2013 12 1 4.5463 1.2180 6.2213 13 1 4.9127 3.4185 5.2704 14 1 2.6603 2.5407 5.4636 15 6 1.9991 -0.6341 1.2264 16 1 1.2745 -0.5414 2.0354 17 6 2.2939 -2.0889 0.9660 18 6 2.5319 -2.5259 -0.3235 19 6 2.7966 -3.8612 -0.5635 20 6 2.8350 -4.7592 0.4872 21 6 2.6030 -4.3235 1.7779 22 6 2.3320 -2.9870 2.0187 23 9 2.1055 -2.5599 3.2803 24 1 -0.3633 0.5545 0.8653 25 1 -0.3634 0.4720 -0.9128 26 1 -0.3633 -1.0266 0.0476 27 1 1.4272 2.0218 0.6708 28 1 2.0133 1.7983 -1.0096 29 1 3.8148 2.1353 0.9776 30 1 4.1201 0.8843 -0.2698 31 1 6.0815 2.0780 3.1865 32 1 2.5071 -1.8246 -1.1444 33 1 2.9781 -4.2027 -1.5719 34 1 3.0461 -5.8015 0.2991 35 1 2.6326 -5.0252 2.5984 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260355225.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:18 Heat of formation + Delta-G solvation = -32.542745 kcal Electronic energy + Delta-G solvation = -18653.724842 eV Core-core repulsion = 15758.143368 eV Total energy + Delta-G solvation = -2895.581473 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.73005 -40.61717 -38.87527 -35.15485 -32.85235 -32.29537 -31.28890 -29.11920 -27.15902 -25.49499 -23.82978 -23.10981 -21.71347 -20.84505 -18.64900 -18.28709 -17.16853 -16.99250 -16.80975 -16.37951 -15.87732 -15.68037 -14.90985 -14.89985 -14.45801 -14.14854 -13.98561 -13.88900 -13.26458 -12.96777 -12.94577 -12.61465 -12.57743 -12.37399 -12.26692 -12.09425 -11.84302 -11.68117 -11.42388 -10.89748 -10.49569 -9.70757 -9.40953 -9.39045 -8.16835 -6.27541 0.34732 0.44567 1.34865 1.36195 1.45784 2.37765 2.80172 3.09417 3.12611 3.54615 3.90224 4.07132 4.12491 4.17879 4.31315 4.43848 4.49207 4.53776 4.65482 4.69762 4.76672 4.88244 4.96083 5.12709 5.18917 5.27267 5.33758 5.36772 5.52071 5.58855 5.63928 5.77470 5.81332 5.95489 6.13444 6.22105 6.35789 6.80025 7.39038 8.90867 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020867 B = 0.008853 C = 0.007353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.508439 B = 3162.079940 C = 3806.844629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.513 5.513 3 C 0.048 3.952 4 C -0.095 4.095 5 C 0.056 3.944 6 H -0.005 1.005 7 C -0.525 4.525 8 H 0.041 0.959 9 C 0.018 3.982 10 N -0.912 5.912 11 Si 0.948 3.052 12 H -0.279 1.279 13 H -0.276 1.276 14 H -0.271 1.271 15 C 0.116 3.884 16 H 0.030 0.970 17 C -0.111 4.111 18 C -0.078 4.078 19 C -0.130 4.130 20 C -0.095 4.095 21 C -0.163 4.163 22 C 0.061 3.939 23 F -0.157 7.157 24 H 0.016 0.984 25 H 0.092 0.908 26 H 0.067 0.933 27 H 0.032 0.968 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.040 0.960 31 H 0.262 0.738 32 H 0.142 0.858 33 H 0.161 0.839 34 H 0.167 0.833 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.850 -8.946 -7.792 13.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.236 5.236 3 C -0.079 4.079 4 C -0.134 4.134 5 C 0.037 3.963 6 H 0.013 0.987 7 C -0.563 4.563 8 H 0.059 0.941 9 C -0.181 4.181 10 N -0.551 5.551 11 Si 0.773 3.227 12 H -0.205 1.205 13 H -0.202 1.202 14 H -0.195 1.195 15 C 0.008 3.992 16 H 0.048 0.952 17 C -0.113 4.113 18 C -0.096 4.096 19 C -0.148 4.148 20 C -0.113 4.113 21 C -0.182 4.182 22 C 0.042 3.958 23 F -0.136 7.136 24 H 0.034 0.966 25 H 0.110 0.890 26 H 0.085 0.915 27 H 0.051 0.949 28 H 0.115 0.885 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.159 0.841 33 H 0.178 0.822 34 H 0.185 0.815 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.550 -9.116 -8.203 13.903 hybrid contribution -0.112 1.231 2.398 2.698 sum -6.662 -7.885 -5.805 11.843 Atomic orbital electron populations 1.22527 0.87253 1.01862 1.01259 1.64610 1.08584 1.15089 1.35354 1.23191 0.95139 0.89101 1.00471 1.22242 0.94619 1.00020 0.96532 1.19330 0.90581 0.92454 0.93941 0.98725 1.21391 0.99866 1.33356 1.01720 0.94088 1.25645 0.94965 0.96736 1.00780 1.70076 1.04659 1.41691 1.38700 0.85716 0.78201 0.78157 0.80602 1.20465 1.20155 1.19529 1.21182 0.97203 0.90616 0.90226 0.95176 1.20085 1.02408 0.94694 0.94109 1.21133 0.96450 0.96823 0.95193 1.21616 0.99840 0.92304 1.01010 1.21370 0.97824 1.01568 0.90515 1.21355 1.03837 0.92711 1.00301 1.18140 1.04691 0.94363 0.78640 1.91440 1.92384 1.91033 1.38772 0.96564 0.88982 0.91462 0.94930 0.88518 0.92954 0.94080 0.92861 0.84063 0.82186 0.81510 0.83495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.41 127.69 1.20 1.80 16 2 N -0.51 -19.10 3.91 -887.69 -3.47 -22.58 16 3 C 0.05 1.87 6.58 86.60 0.57 2.44 16 4 C -0.10 -4.57 6.17 31.80 0.20 -4.37 16 5 C 0.06 2.95 2.50 -10.66 -0.03 2.92 16 6 H -0.01 -0.33 7.68 -2.38 -0.02 -0.34 16 7 C -0.53 -30.29 8.49 25.60 0.22 -30.07 16 8 H 0.04 2.41 7.34 -2.91 -0.02 2.39 16 9 C 0.02 1.04 5.09 84.65 0.43 1.47 16 10 N -0.91 -53.91 12.15 21.45 0.26 -53.65 16 11 Si 0.95 45.24 29.54 68.60 2.03 47.26 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 14 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 15 C 0.12 5.18 2.09 44.31 0.09 5.27 16 16 H 0.03 1.48 6.67 -2.39 -0.02 1.47 16 17 C -0.11 -4.46 4.84 -19.82 -0.10 -4.56 16 18 C -0.08 -2.54 9.33 22.26 0.21 -2.34 16 19 C -0.13 -3.24 10.04 22.27 0.22 -3.01 16 20 C -0.10 -2.26 10.04 22.26 0.22 -2.03 16 21 C -0.16 -4.93 10.03 22.31 0.22 -4.71 16 22 C 0.06 2.42 7.24 22.37 0.16 2.59 16 23 F -0.16 -7.15 16.60 44.97 0.75 -6.40 16 24 H 0.02 0.52 8.01 -2.39 -0.02 0.50 16 25 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.03 1.31 7.97 -2.39 -0.02 1.29 16 28 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 29 H 0.05 2.78 6.77 -2.38 -0.02 2.76 16 30 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 32 H 0.14 4.50 7.24 -2.91 -0.02 4.48 16 33 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 34 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 35 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -66.07 292.11 4.26 -61.82 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 1.07 Total: 8.16 kcal Atomic # 6 Polarization: -38.24 SS G_CDS: 3.63 Total: -34.61 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -3.21 Total: -76.23 kcal Atomic # 9 Polarization: -7.15 SS G_CDS: 0.75 Total: -6.40 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -66.07 4.26 -61.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260355225.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.272 kcal (2) G-P(sol) polarization free energy of solvation -66.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds