Wall clock time and date at job start Mon Mar 30 2020 06:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38225 * 120.01264 * 2 1 4 4 C 1.38225 * 120.02437 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.97105 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.90789 * 20.34708 * 5 4 3 7 7 N 1.47895 * 109.91395 * 141.45277 * 5 4 3 8 8 C 1.48540 * 105.81623 * 144.68222 * 7 5 4 9 9 C 1.54930 * 103.22811 * 320.79081 * 8 7 5 10 10 C 1.53993 * 109.91491 * 259.04512 * 5 4 3 11 11 H 1.09002 * 110.30943 * 358.33662 * 10 5 4 12 12 C 1.50702 * 110.31065 * 120.51024 * 10 5 4 13 13 H 1.08003 * 119.99778 * 359.97438 * 12 10 5 14 14 C 1.37874 * 120.00227 * 180.02562 * 12 10 5 15 15 N 1.31524 * 119.99810 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00141 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47130 * 89.99813 * 16 14 12 18 18 H 1.48503 * 109.47097 * 209.99538 * 16 14 12 19 19 H 1.48498 * 109.47040 * 329.99850 * 16 14 12 20 20 C 1.38262 * 120.05278 * 0.02562 * 4 3 2 21 21 C 1.38180 * 120.02743 * 0.02562 * 20 4 3 22 22 C 1.38436 * 120.01479 * 180.02562 * 2 1 3 23 23 F 1.35099 * 120.02621 * 359.97438 * 22 2 1 24 24 H 1.08997 * 109.47007 * 90.00149 * 1 2 3 25 25 H 1.09004 * 109.46709 * 210.00060 * 1 2 3 26 26 H 1.08995 * 109.47259 * 329.99815 * 1 2 3 27 27 H 1.07994 * 119.98533 * 0.29822 * 3 2 1 28 28 H 1.00899 * 111.00076 * 265.19204 * 7 5 4 29 29 H 1.09002 * 110.66605 * 79.23369 * 8 7 5 30 30 H 1.09006 * 110.66507 * 202.35811 * 8 7 5 31 31 H 1.09000 * 110.72411 * 155.77238 * 9 8 7 32 32 H 1.09001 * 110.72727 * 278.87595 * 9 8 7 33 33 H 0.96996 * 119.99288 * 180.02562 * 15 14 12 34 34 H 1.08000 * 119.98422 * 179.97438 * 20 4 3 35 35 H 1.08000 * 120.01187 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1972 -0.0005 5 6 4.3332 2.5029 0.0000 6 1 3.6862 3.3040 0.3572 7 7 5.5273 2.3956 0.8660 8 6 6.5783 3.2148 0.2097 9 6 6.3709 2.9169 -1.2965 10 6 4.8330 2.8209 -1.4214 11 1 4.5584 2.0193 -2.1071 12 6 4.2637 4.1335 -1.8946 13 1 3.6049 4.6993 -1.2524 14 6 4.5830 4.6118 -3.1477 15 7 5.3848 3.9226 -3.9299 16 14 3.8768 6.2385 -3.7345 17 1 4.7930 7.3427 -3.3519 18 1 3.7269 6.2090 -5.2116 19 1 2.5490 6.4570 -3.1064 20 6 4.2733 0.0006 -0.0016 21 6 3.5843 -1.1972 -0.0027 22 6 2.1995 -1.1987 -0.0005 23 9 1.5248 -2.3692 -0.0005 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5138 27 1 1.6584 2.1321 0.0049 28 1 5.3316 2.7358 1.7956 29 1 6.4259 4.2740 0.4170 30 1 7.5703 2.8976 0.5316 31 1 6.7574 3.7324 -1.9078 32 1 6.8427 1.9736 -1.5717 33 1 5.6097 4.2593 -4.8113 34 1 5.3533 0.0021 -0.0024 35 1 4.1256 -2.1317 -0.0039 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260413290.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:42 Heat of formation + Delta-G solvation = -31.860766 kcal Electronic energy + Delta-G solvation = -18065.869229 eV Core-core repulsion = 15170.317328 eV Total energy + Delta-G solvation = -2895.551901 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.55843 -39.19667 -37.14495 -32.83974 -32.44572 -30.91723 -29.09079 -27.28662 -26.51945 -24.44226 -22.15549 -21.54743 -19.99402 -18.88462 -17.13438 -16.72465 -16.00149 -15.44317 -15.33993 -14.82988 -14.49332 -13.95676 -13.33496 -13.15693 -13.05214 -12.80723 -12.43131 -12.25906 -12.05448 -11.62676 -11.43735 -11.11215 -10.86810 -10.71742 -10.62318 -10.49849 -10.26733 -9.96972 -9.59309 -8.90596 -8.47567 -8.43203 -7.92228 -7.88299 -6.08493 -4.13990 1.61839 1.67394 3.24710 3.32486 3.34525 4.03152 4.36186 4.64743 4.86250 5.06682 5.15804 5.22720 5.43074 5.63193 5.73892 5.77506 5.89495 5.91609 6.01209 6.13825 6.18920 6.32795 6.41066 6.50447 6.58847 6.65736 6.74325 7.00582 7.11756 7.14147 7.37193 7.51594 7.58627 7.78407 7.87948 8.01525 8.35425 8.88142 9.50540 10.99589 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.022943 B = 0.006778 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.121081 B = 4129.972765 C = 4787.348321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.125 4.125 3 C -0.091 4.091 4 C -0.049 4.049 5 C 0.106 3.894 6 H 0.053 0.947 7 N -0.672 5.672 8 C 0.041 3.959 9 C -0.101 4.101 10 C 0.056 3.944 11 H 0.037 0.963 12 C -0.517 4.517 13 H 0.054 0.946 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.068 4.068 21 C -0.157 4.157 22 C 0.074 3.926 23 F -0.149 7.149 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.128 0.872 28 H 0.323 0.677 29 H 0.036 0.964 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.038 0.962 33 H 0.261 0.739 34 H 0.137 0.863 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.711 -5.664 8.088 10.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.126 4.126 3 C -0.110 4.110 4 C -0.050 4.050 5 C -0.004 4.004 6 H 0.071 0.929 7 N -0.299 5.299 8 C -0.088 4.088 9 C -0.139 4.139 10 C 0.037 3.963 11 H 0.055 0.945 12 C -0.555 4.555 13 H 0.072 0.928 14 C -0.138 4.138 15 N -0.522 5.522 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.086 4.086 21 C -0.176 4.176 22 C 0.055 3.945 23 F -0.128 7.128 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.146 0.854 28 H 0.136 0.864 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.155 0.845 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -3.422 -6.361 7.668 10.534 hybrid contribution -0.739 1.617 -0.293 1.801 sum -4.161 -4.744 7.375 9.706 Atomic orbital electron populations 1.20659 0.90825 1.02596 1.02479 1.19779 0.96474 0.91992 1.04382 1.20818 0.93814 0.96767 0.99592 1.20083 0.92798 0.95889 0.96262 1.21466 0.90648 0.91166 0.97084 0.92929 1.62918 1.07832 1.54790 1.04368 1.23012 0.94066 0.94735 0.96989 1.22429 0.99117 1.00291 0.92100 1.19477 0.91438 0.97048 0.88295 0.94477 1.21188 1.28935 1.05009 1.00399 0.92751 1.24953 0.95053 0.97192 0.96601 1.69975 1.35022 1.37953 1.09290 0.86642 0.79546 0.84118 0.78013 1.20683 1.21155 1.19918 1.20881 1.00826 0.90278 0.96648 1.21092 0.92005 0.99677 1.04857 1.17480 0.90099 0.80541 1.06384 1.91413 1.80615 1.46405 1.94376 0.91144 0.91779 0.91290 0.85423 0.86364 0.94588 0.92061 0.90256 0.94297 0.92897 0.84534 0.85515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 9.84 36.00 0.35 -1.05 16 2 C -0.13 -2.01 5.89 -104.56 -0.62 -2.62 16 3 C -0.09 -1.57 9.33 -39.59 -0.37 -1.94 16 4 C -0.05 -0.92 4.75 -104.62 -0.50 -1.41 16 5 C 0.11 2.11 3.13 -67.80 -0.21 1.89 16 6 H 0.05 1.07 7.28 -51.93 -0.38 0.69 16 7 N -0.67 -11.93 6.35 -104.34 -0.66 -12.59 16 8 C 0.04 0.76 7.55 -1.90 -0.01 0.75 16 9 C -0.10 -2.27 6.16 -24.87 -0.15 -2.43 16 10 C 0.06 1.35 2.49 -90.41 -0.23 1.12 16 11 H 0.04 1.00 7.68 -51.93 -0.40 0.60 16 12 C -0.52 -13.55 8.49 -34.44 -0.29 -13.84 16 13 H 0.05 1.41 7.35 -52.48 -0.39 1.02 16 14 C 0.06 1.72 5.09 -17.82 -0.09 1.63 16 15 N -0.88 -24.72 12.15 55.43 0.67 -24.05 16 16 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 20 C -0.07 -1.19 9.33 -39.59 -0.37 -1.56 16 21 C -0.16 -2.53 10.03 -39.51 -0.40 -2.92 16 22 C 0.07 1.21 7.24 -39.42 -0.29 0.93 16 23 F -0.15 -2.37 16.48 2.25 0.04 -2.33 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.77 7.64 -51.93 -0.40 0.37 16 26 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 27 H 0.13 2.06 8.04 -52.49 -0.42 1.64 16 28 H 0.32 5.02 8.92 -39.29 -0.35 4.67 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.99 6.77 -51.93 -0.35 1.64 16 32 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.14 2.37 7.69 -52.49 -0.40 1.97 16 35 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 293.56 15.07 4.42 4.42 Total: -1.00 -27.42 293.56 -8.47 -35.89 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -4.76 Total: 4.44 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -3.17 Total: -21.45 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.01 Total: -36.64 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.33 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.42 -8.47 -35.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260413290.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.032 kcal (2) G-P(sol) polarization free energy of solvation -27.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds