Wall clock time and date at job start Mon Mar 30 2020 06:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38225 * 120.01608 * 2 1 4 4 C 1.38219 * 120.02950 * 179.72497 * 3 2 1 5 5 C 1.50694 * 119.97642 * 180.02562 * 4 3 2 6 6 H 1.08998 * 109.91004 * 20.69824 * 5 4 3 7 7 N 1.47903 * 109.91880 * 141.80328 * 5 4 3 8 8 C 1.48533 * 105.82245 * 144.68487 * 7 5 4 9 9 C 1.54940 * 103.22226 * 320.78941 * 8 7 5 10 10 C 1.53995 * 109.91726 * 259.59653 * 5 4 3 11 11 H 1.08997 * 110.31143 * 120.50560 * 10 5 4 12 12 C 1.50699 * 110.30625 * 358.33535 * 10 5 4 13 13 H 1.07998 * 120.00357 * 0.02562 * 12 10 5 14 14 C 1.37876 * 119.99846 * 180.02562 * 12 10 5 15 15 N 1.31516 * 120.00212 * 0.02562 * 14 12 10 16 16 Si 1.86806 * 120.00119 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.46795 * 60.00089 * 16 14 12 18 18 H 1.48502 * 109.46991 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47039 * 300.00021 * 16 14 12 20 20 C 1.38274 * 120.05002 * 359.97438 * 4 3 2 21 21 C 1.38182 * 120.02373 * 0.04333 * 20 4 3 22 22 C 1.38440 * 120.01197 * 179.72576 * 2 1 3 23 23 F 1.35103 * 120.02569 * 0.24883 * 22 2 1 24 24 H 1.09000 * 109.46962 * 89.99689 * 1 2 3 25 25 H 1.08996 * 109.47124 * 210.00190 * 1 2 3 26 26 H 1.08997 * 109.46849 * 330.00168 * 1 2 3 27 27 H 1.07998 * 119.98144 * 359.74112 * 3 2 1 28 28 H 1.00906 * 110.99542 * 265.19400 * 7 5 4 29 29 H 1.08993 * 110.66729 * 79.22133 * 8 7 5 30 30 H 1.08998 * 110.66674 * 202.19400 * 8 7 5 31 31 H 1.08999 * 110.71882 * 155.77335 * 9 8 7 32 32 H 1.09003 * 110.72748 * 278.87577 * 9 8 7 33 33 H 0.96996 * 120.00622 * 180.02562 * 15 14 12 34 34 H 1.07995 * 119.98489 * 180.02562 * 20 4 3 35 35 H 1.07997 * 120.01101 * 179.97438 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1969 0.0000 4 6 3.5806 1.1972 0.0057 5 6 4.3333 2.5027 0.0063 6 1 3.6866 3.3038 0.3643 7 7 5.5281 2.3952 0.8714 8 6 6.5786 3.2146 0.2147 9 6 6.3701 2.9172 -1.2915 10 6 4.8277 2.8239 -1.4163 11 1 4.4147 3.7740 -1.7549 12 6 4.4444 1.7177 -2.3653 13 1 3.8985 0.8595 -2.0022 14 6 4.7907 1.8013 -3.6973 15 7 5.4559 2.8461 -4.1395 16 14 4.3151 0.4305 -4.8738 17 1 2.8371 0.2877 -4.8957 18 1 4.8004 0.7588 -6.2384 19 1 4.9291 -0.8442 -4.4228 20 6 4.2733 0.0005 0.0120 21 6 3.5842 -1.1973 0.0117 22 6 2.1994 -1.1988 0.0057 23 9 1.5247 -2.3692 0.0063 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6584 2.1321 -0.0042 28 1 5.3330 2.7350 1.8012 29 1 6.4263 4.2736 0.4224 30 1 7.5706 2.8991 0.5379 31 1 6.7561 3.7330 -1.9027 32 1 6.8416 1.9740 -1.5674 33 1 5.6993 2.9051 -5.0766 34 1 5.3532 0.0020 0.0169 35 1 4.1254 -2.1318 0.0162 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260413310.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:49 Heat of formation + Delta-G solvation = -38.386105 kcal Electronic energy + Delta-G solvation = -18507.499657 eV Core-core repulsion = 15611.664796 eV Total energy + Delta-G solvation = -2895.834861 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.76302 -40.72936 -38.52204 -34.68322 -33.70309 -32.31402 -30.88685 -28.68613 -27.59401 -26.29007 -23.50674 -22.88833 -21.63551 -20.47438 -18.44047 -18.22257 -17.73325 -16.87948 -16.58953 -16.45823 -16.07301 -15.24619 -14.71316 -14.37657 -14.27617 -14.12014 -13.96887 -13.85867 -13.39545 -13.33897 -13.09958 -12.80415 -12.57761 -12.35960 -12.14749 -11.95471 -11.72560 -11.54745 -11.22260 -10.70714 -10.45606 -9.65289 -9.35494 -9.04162 -8.09065 -6.11714 0.41637 0.50256 1.38250 1.39731 1.46017 2.44435 2.81863 3.25017 3.43947 3.46450 3.95064 3.97275 4.11289 4.29761 4.43565 4.46689 4.53961 4.65761 4.68467 4.77728 4.79851 4.93296 5.00257 5.14602 5.24511 5.31370 5.39010 5.44362 5.53621 5.58477 5.74426 5.84848 5.90487 6.15121 6.20648 6.41437 6.70266 6.96562 7.54701 9.01105 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017132 B = 0.010258 C = 0.007514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.006263 B = 2728.872032 C = 3725.552998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.127 4.127 3 C -0.108 4.108 4 C -0.029 4.029 5 C 0.113 3.887 6 H 0.052 0.948 7 N -0.663 5.663 8 C 0.045 3.955 9 C -0.089 4.089 10 C 0.044 3.956 11 H 0.004 0.996 12 C -0.507 4.507 13 H 0.073 0.927 14 C 0.018 3.982 15 N -0.921 5.921 16 Si 0.928 3.072 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.275 1.275 20 C -0.063 4.063 21 C -0.166 4.166 22 C 0.056 3.944 23 F -0.150 7.150 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.138 0.862 28 H 0.343 0.657 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.256 0.744 34 H 0.127 0.873 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.691 -2.491 10.371 11.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.128 4.128 3 C -0.126 4.126 4 C -0.029 4.029 5 C 0.003 3.997 6 H 0.070 0.930 7 N -0.293 5.293 8 C -0.084 4.084 9 C -0.128 4.128 10 C 0.025 3.975 11 H 0.022 0.978 12 C -0.546 4.546 13 H 0.091 0.909 14 C -0.180 4.180 15 N -0.561 5.561 16 Si 0.756 3.244 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.082 4.082 21 C -0.184 4.184 22 C 0.037 3.963 23 F -0.129 7.129 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.107 0.893 27 H 0.156 0.844 28 H 0.159 0.841 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.145 0.855 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.411 -3.116 9.987 11.354 hybrid contribution -0.325 0.132 -1.132 1.185 sum -4.737 -2.984 8.855 10.476 Atomic orbital electron populations 1.20711 0.88731 1.03914 1.02931 1.20044 0.98046 0.91422 1.03327 1.20882 0.93430 0.97505 1.00796 1.19635 0.93002 0.95210 0.95098 1.21171 0.91131 0.92600 0.94767 0.92972 1.62800 1.06654 1.55019 1.04822 1.23031 0.95987 0.95058 0.94339 1.22288 0.98072 0.98914 0.93498 1.19513 0.92525 0.95215 0.90270 0.97783 1.21782 1.34347 1.05586 0.92840 0.90879 1.25544 0.95672 0.97022 0.99796 1.70059 1.40881 1.30072 1.15132 0.86059 0.78626 0.80977 0.78781 1.20197 1.21347 1.20034 1.20748 1.00446 0.90671 0.96317 1.21243 0.92340 1.00075 1.04767 1.17625 0.90293 0.80949 1.07429 1.91397 1.80547 1.46438 1.94506 0.91028 0.91065 0.89308 0.84415 0.84115 0.93764 0.89621 0.94359 0.94518 0.93496 0.85518 0.84251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.67 9.84 71.24 0.70 -1.97 16 2 C -0.13 -4.16 5.89 -19.82 -0.12 -4.27 16 3 C -0.11 -3.67 9.26 22.26 0.21 -3.47 16 4 C -0.03 -1.07 3.10 -19.86 -0.06 -1.13 16 5 C 0.11 4.24 3.47 44.31 0.15 4.40 16 6 H 0.05 1.80 8.03 -2.39 -0.02 1.78 16 7 N -0.66 -21.64 6.34 -484.03 -3.07 -24.71 16 8 C 0.04 1.49 7.55 86.65 0.65 2.15 16 9 C -0.09 -3.95 5.77 31.95 0.18 -3.77 16 10 C 0.04 2.06 2.89 -10.51 -0.03 2.02 16 11 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 12 C -0.51 -26.47 7.50 25.60 0.19 -26.27 16 13 H 0.07 3.78 4.52 -2.91 -0.01 3.76 16 14 C 0.02 0.98 5.34 84.65 0.45 1.43 16 15 N -0.92 -52.80 12.64 21.45 0.27 -52.53 16 16 Si 0.93 44.39 29.54 68.60 2.03 46.42 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 18 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 19 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 20 C -0.06 -2.39 7.59 22.27 0.17 -2.22 16 21 C -0.17 -5.81 10.03 22.31 0.22 -5.59 16 22 C 0.06 1.95 7.24 22.38 0.16 2.11 16 23 F -0.15 -5.02 16.48 44.97 0.74 -4.28 16 24 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.07 1.66 7.64 -2.39 -0.02 1.64 16 26 H 0.09 1.83 8.09 -2.39 -0.02 1.81 16 27 H 0.14 4.14 8.05 -2.91 -0.02 4.12 16 28 H 0.34 9.05 8.92 -89.69 -0.80 8.25 16 29 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 31 H 0.04 1.82 8.13 -2.39 -0.02 1.80 16 32 H 0.04 1.78 7.88 -2.39 -0.02 1.76 16 33 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 34 H 0.13 4.94 7.67 -2.91 -0.02 4.92 16 35 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 Total: -1.00 -58.98 289.64 3.16 -55.82 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.30 Total: 15.86 kcal Atomic # 6 Polarization: -39.47 SS G_CDS: 2.89 Total: -36.58 kcal Atomic # 7 Polarization: -74.44 SS G_CDS: -2.80 Total: -77.23 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.74 Total: -4.28 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -58.98 3.16 -55.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260413310.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.435 kcal (2) G-P(sol) polarization free energy of solvation -58.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds