Wall clock time and date at job start Mon Mar 30 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38220 * 120.01180 * 2 1 4 4 C 1.38227 * 120.02249 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.96965 * 179.97438 * 4 3 2 6 6 H 1.08997 * 110.06473 * 338.79113 * 5 4 3 7 7 N 1.47908 * 109.91383 * 217.59130 * 5 4 3 8 8 C 1.48529 * 105.81746 * 215.31438 * 7 5 4 9 9 C 1.54939 * 103.22799 * 39.20982 * 8 7 5 10 10 C 1.53992 * 109.91883 * 100.00274 * 5 4 3 11 11 H 1.09000 * 110.38851 * 1.61193 * 10 5 4 12 12 C 1.50700 * 110.30550 * 239.49054 * 10 5 4 13 13 H 1.07993 * 120.00302 * 338.72275 * 12 10 5 14 14 C 1.37876 * 119.99695 * 158.72408 * 12 10 5 15 15 N 1.31517 * 120.00185 * 174.86875 * 14 12 10 16 16 Si 1.86808 * 119.99902 * 354.86667 * 14 12 10 17 17 H 1.48499 * 109.47168 * 275.26286 * 16 14 12 18 18 H 1.48500 * 109.47122 * 35.26715 * 16 14 12 19 19 H 1.48500 * 109.46937 * 155.26480 * 16 14 12 20 20 C 1.38264 * 120.05356 * 0.25806 * 4 3 2 21 21 C 1.38177 * 120.02544 * 359.48979 * 20 4 3 22 22 C 1.38440 * 120.01052 * 180.02562 * 2 1 3 23 23 F 1.35096 * 120.02943 * 359.95576 * 22 2 1 24 24 H 1.09003 * 109.46657 * 90.00134 * 1 2 3 25 25 H 1.09001 * 109.46815 * 209.99676 * 1 2 3 26 26 H 1.08996 * 109.47176 * 330.00145 * 1 2 3 27 27 H 1.07994 * 119.98741 * 0.02562 * 3 2 1 28 28 H 1.00899 * 110.99781 * 335.82846 * 7 5 4 29 29 H 1.08999 * 110.67101 * 280.77566 * 8 7 5 30 30 H 1.09002 * 110.66233 * 157.64047 * 8 7 5 31 31 H 1.08996 * 110.72569 * 204.22588 * 9 8 7 32 32 H 1.09000 * 110.87816 * 81.00885 * 9 8 7 33 33 H 0.97004 * 120.00171 * 179.97438 * 15 14 12 34 34 H 1.07995 * 119.98575 * 179.74242 * 20 4 3 35 35 H 1.07992 * 120.01328 * 180.23236 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3332 2.5028 -0.0011 6 1 3.6929 3.3033 -0.3714 7 7 5.5392 2.3888 -0.8499 8 6 6.5810 3.2132 -0.1858 9 6 6.3531 2.9272 1.3198 10 6 4.8136 2.8321 1.4244 11 1 4.5296 2.0371 2.1140 12 6 4.2380 4.1484 1.8793 13 1 3.8878 4.8651 1.1513 14 6 4.1583 4.4377 3.2250 15 7 3.7506 5.6241 3.6196 16 14 4.6294 3.1442 4.4879 17 1 3.4653 2.2599 4.7487 18 1 5.7602 2.3339 3.9683 19 1 5.0374 3.8109 5.7506 20 6 4.2733 0.0005 -0.0065 21 6 3.5843 -1.1972 -0.0012 22 6 2.1994 -1.1988 -0.0005 23 9 1.5248 -2.3692 -0.0002 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6584 2.1321 0.0004 28 1 5.8353 1.4276 -0.9301 29 1 6.4315 4.2707 -0.4034 30 1 7.5772 2.8935 -0.4916 31 1 6.7312 3.7475 1.9298 32 1 6.8184 1.9855 1.6111 33 1 3.6942 5.8275 4.5664 34 1 5.3533 0.0020 -0.0111 35 1 4.1256 -2.1317 -0.0020 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260413321.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:53 Heat of formation + Delta-G solvation = -28.216027 kcal Electronic energy + Delta-G solvation = -18188.850487 eV Core-core repulsion = 15293.456634 eV Total energy + Delta-G solvation = -2895.393853 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.72464 -39.59559 -37.40404 -32.88276 -32.52059 -31.13545 -29.66449 -27.46514 -26.63967 -24.28968 -22.43842 -21.79986 -20.39746 -18.93553 -17.43697 -16.92443 -16.25510 -16.02686 -15.51260 -14.73652 -14.35422 -13.60319 -13.40756 -13.32549 -13.24239 -13.07190 -12.84623 -12.57161 -12.30883 -12.09441 -11.89910 -11.13277 -11.08365 -10.87660 -10.72641 -10.42702 -10.38421 -9.98633 -9.72241 -9.09141 -8.69725 -8.62166 -8.35944 -7.84351 -6.14671 -4.13213 1.37185 1.44364 3.23714 3.32464 3.34575 3.78352 4.36288 4.44345 4.81002 4.89004 4.90754 5.06435 5.18765 5.42870 5.48437 5.60276 5.65361 5.73202 5.88579 5.93360 6.01236 6.14526 6.23318 6.26845 6.35410 6.44898 6.50096 6.61118 6.70983 6.90389 7.04561 7.15336 7.18878 7.35241 7.72086 7.89977 8.44766 8.90036 9.48373 10.98009 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020817 B = 0.007794 C = 0.006739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.755590 B = 3591.513612 C = 4153.844266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.117 4.117 3 C -0.081 4.081 4 C -0.064 4.064 5 C 0.116 3.884 6 H 0.098 0.902 7 N -0.674 5.674 8 C 0.049 3.951 9 C -0.157 4.157 10 C 0.003 3.997 11 H 0.033 0.967 12 C -0.507 4.507 13 H 0.076 0.924 14 C 0.074 3.926 15 N -0.897 5.897 16 Si 0.871 3.129 17 H -0.276 1.276 18 H -0.265 1.265 19 H -0.289 1.289 20 C -0.103 4.103 21 C -0.147 4.147 22 C 0.076 3.924 23 F -0.146 7.146 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.137 0.863 28 H 0.324 0.676 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.126 0.874 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.583 -11.482 -6.850 13.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.117 4.117 3 C -0.099 4.099 4 C -0.065 4.065 5 C 0.007 3.993 6 H 0.115 0.885 7 N -0.303 5.303 8 C -0.080 4.080 9 C -0.196 4.196 10 C -0.017 4.017 11 H 0.051 0.949 12 C -0.545 4.545 13 H 0.094 0.906 14 C -0.128 4.128 15 N -0.534 5.534 16 Si 0.699 3.301 17 H -0.202 1.202 18 H -0.189 1.189 19 H -0.215 1.215 20 C -0.122 4.122 21 C -0.166 4.166 22 C 0.057 3.943 23 F -0.125 7.125 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.155 0.845 28 H 0.141 0.859 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.144 0.856 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.841 -10.911 -7.225 13.113 hybrid contribution 0.425 -1.410 1.774 2.305 sum -0.417 -12.321 -5.451 13.480 Atomic orbital electron populations 1.20709 0.90435 1.03251 1.02497 1.19911 0.96853 0.91923 1.03061 1.20886 0.93557 0.97217 0.98254 1.20324 0.94039 0.95559 0.96557 1.21624 0.91395 0.92360 0.93949 0.88458 1.63108 1.04946 1.13916 1.48301 1.22997 0.93312 0.99187 0.92525 1.23452 0.99548 0.99729 0.96917 1.20306 0.91328 0.97947 0.92141 0.94852 1.20947 1.40768 1.00020 0.92725 0.90597 1.25000 0.94453 0.94953 0.98391 1.69901 1.47254 1.20343 1.15925 0.86954 0.79651 0.82371 0.81170 1.20202 1.18911 1.21531 1.20743 0.99900 0.91228 1.00328 1.20976 0.92161 0.99343 1.04130 1.17471 0.90016 0.80723 1.06110 1.91430 1.80527 1.46225 1.94290 0.91040 0.91547 0.90725 0.84512 0.85929 0.90058 0.92393 0.90901 0.94483 0.92600 0.85578 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.84 36.01 0.35 -1.03 16 2 C -0.12 -1.76 5.89 -104.55 -0.62 -2.38 16 3 C -0.08 -1.33 9.33 -39.59 -0.37 -1.70 16 4 C -0.06 -1.10 4.75 -104.62 -0.50 -1.60 16 5 C 0.12 2.23 3.27 -67.79 -0.22 2.00 16 6 H 0.10 2.02 7.39 -51.93 -0.38 1.64 16 7 N -0.67 -11.60 7.39 -104.34 -0.77 -12.38 16 8 C 0.05 0.85 7.55 -1.90 -0.01 0.84 16 9 C -0.16 -3.14 5.85 -24.87 -0.15 -3.29 16 10 C 0.00 0.07 2.02 -90.42 -0.18 -0.11 16 11 H 0.03 0.78 5.62 -51.93 -0.29 0.48 16 12 C -0.51 -13.47 8.69 -34.44 -0.30 -13.77 16 13 H 0.08 2.20 7.76 -52.49 -0.41 1.79 16 14 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 15 N -0.90 -26.60 13.96 55.43 0.77 -25.83 16 16 Si 0.87 21.18 26.76 -169.99 -4.55 16.63 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.26 -6.15 6.60 56.52 0.37 -5.78 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 C -0.10 -1.58 8.98 -39.59 -0.36 -1.94 16 21 C -0.15 -2.11 10.03 -39.51 -0.40 -2.50 16 22 C 0.08 1.15 7.24 -39.41 -0.29 0.87 16 23 F -0.15 -2.16 16.48 2.25 0.04 -2.12 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.07 0.78 7.64 -51.93 -0.40 0.38 16 26 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 27 H 0.14 2.17 8.05 -52.49 -0.42 1.75 16 28 H 0.32 4.92 6.17 -39.29 -0.24 4.68 16 29 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.58 7.85 -51.93 -0.41 1.17 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.13 1.72 6.55 -52.49 -0.34 1.37 16 35 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 288.37 15.07 4.35 4.35 Total: -1.00 -28.83 288.37 -7.88 -36.71 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -4.59 Total: 5.28 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -3.13 Total: -22.64 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.00 Total: -38.20 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.55 Total: 16.63 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.83 -7.88 -36.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260413321.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.493 kcal (2) G-P(sol) polarization free energy of solvation -28.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds