Wall clock time and date at job start Mon Mar 30 2020 06:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38220 * 120.01180 * 2 1 4 4 C 1.38227 * 120.02249 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.96965 * 179.97438 * 4 3 2 6 6 H 1.08997 * 110.06473 * 338.79113 * 5 4 3 7 7 N 1.47908 * 109.91383 * 217.59130 * 5 4 3 8 8 C 1.48529 * 105.81746 * 215.31438 * 7 5 4 9 9 C 1.54939 * 103.22799 * 39.20982 * 8 7 5 10 10 C 1.53992 * 109.91883 * 100.00274 * 5 4 3 11 11 H 1.09000 * 110.38851 * 1.61193 * 10 5 4 12 12 C 1.50700 * 110.30550 * 239.49054 * 10 5 4 13 13 H 1.07993 * 120.00302 * 338.72275 * 12 10 5 14 14 C 1.37876 * 119.99695 * 158.72408 * 12 10 5 15 15 N 1.31517 * 120.00185 * 174.86875 * 14 12 10 16 16 Si 1.86808 * 119.99902 * 354.86667 * 14 12 10 17 17 H 1.48499 * 109.47168 * 275.26286 * 16 14 12 18 18 H 1.48500 * 109.47122 * 35.26715 * 16 14 12 19 19 H 1.48500 * 109.46937 * 155.26480 * 16 14 12 20 20 C 1.38264 * 120.05356 * 0.25806 * 4 3 2 21 21 C 1.38177 * 120.02544 * 359.48979 * 20 4 3 22 22 C 1.38440 * 120.01052 * 180.02562 * 2 1 3 23 23 F 1.35096 * 120.02943 * 359.95576 * 22 2 1 24 24 H 1.09003 * 109.46657 * 90.00134 * 1 2 3 25 25 H 1.09001 * 109.46815 * 209.99676 * 1 2 3 26 26 H 1.08996 * 109.47176 * 330.00145 * 1 2 3 27 27 H 1.07994 * 119.98741 * 0.02562 * 3 2 1 28 28 H 1.00899 * 110.99781 * 335.82846 * 7 5 4 29 29 H 1.08999 * 110.67101 * 280.77566 * 8 7 5 30 30 H 1.09002 * 110.66233 * 157.64047 * 8 7 5 31 31 H 1.08996 * 110.72569 * 204.22588 * 9 8 7 32 32 H 1.09000 * 110.87816 * 81.00885 * 9 8 7 33 33 H 0.97004 * 120.00171 * 179.97438 * 15 14 12 34 34 H 1.07995 * 119.98575 * 179.74242 * 20 4 3 35 35 H 1.07992 * 120.01328 * 180.23236 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.3332 2.5028 -0.0011 6 1 3.6929 3.3033 -0.3714 7 7 5.5392 2.3888 -0.8499 8 6 6.5810 3.2132 -0.1858 9 6 6.3531 2.9272 1.3198 10 6 4.8136 2.8321 1.4244 11 1 4.5296 2.0371 2.1140 12 6 4.2380 4.1484 1.8793 13 1 3.8878 4.8651 1.1513 14 6 4.1583 4.4377 3.2250 15 7 3.7506 5.6241 3.6196 16 14 4.6294 3.1442 4.4879 17 1 3.4653 2.2599 4.7487 18 1 5.7602 2.3339 3.9683 19 1 5.0374 3.8109 5.7506 20 6 4.2733 0.0005 -0.0065 21 6 3.5843 -1.1972 -0.0012 22 6 2.1994 -1.1988 -0.0005 23 9 1.5248 -2.3692 -0.0002 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6584 2.1321 0.0004 28 1 5.8353 1.4276 -0.9301 29 1 6.4315 4.2707 -0.4034 30 1 7.5772 2.8935 -0.4916 31 1 6.7312 3.7475 1.9298 32 1 6.8184 1.9855 1.6111 33 1 3.6942 5.8275 4.5664 34 1 5.3533 0.0020 -0.0111 35 1 4.1256 -2.1317 -0.0020 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260413321.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:52 Heat of formation + Delta-G solvation = -45.782100 kcal Electronic energy + Delta-G solvation = -18189.612209 eV Core-core repulsion = 15293.456634 eV Total energy + Delta-G solvation = -2896.155575 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.87752 -40.93260 -38.80887 -34.77899 -33.82211 -32.41178 -31.43893 -28.85996 -27.80057 -26.14549 -23.63648 -23.21868 -21.87310 -20.51746 -18.92113 -18.60302 -17.47053 -17.42170 -16.71137 -16.58428 -15.55599 -15.24860 -14.83784 -14.66988 -14.46226 -14.44093 -14.29549 -14.13013 -13.75282 -13.26535 -13.12922 -12.97734 -12.56632 -12.35057 -12.21412 -12.01374 -11.86506 -11.71709 -11.52516 -10.99776 -10.72660 -9.86690 -9.67794 -9.23453 -8.30094 -6.31548 0.15765 0.26667 1.30848 1.32944 1.42500 2.32364 2.57050 3.04726 3.28154 3.44670 3.70851 3.76928 3.87214 4.18412 4.27129 4.28841 4.41270 4.45275 4.60491 4.71717 4.74109 4.75562 4.85626 5.03151 5.07731 5.14751 5.17873 5.19999 5.31053 5.37816 5.44965 5.62359 5.69591 5.89585 5.96003 6.30951 6.62632 6.74347 7.32428 8.86423 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020817 B = 0.007794 C = 0.006739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.755590 B = 3591.513612 C = 4153.844266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.120 4.120 3 C -0.098 4.098 4 C -0.083 4.083 5 C 0.126 3.874 6 H 0.067 0.933 7 N -0.668 5.668 8 C 0.055 3.945 9 C -0.156 4.156 10 C 0.000 4.000 11 H 0.029 0.971 12 C -0.503 4.503 13 H 0.033 0.967 14 C 0.017 3.983 15 N -0.947 5.947 16 Si 0.932 3.068 17 H -0.274 1.274 18 H -0.241 1.241 19 H -0.290 1.290 20 C -0.102 4.102 21 C -0.139 4.139 22 C 0.069 3.931 23 F -0.143 7.143 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.128 0.872 28 H 0.341 0.659 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.264 0.736 34 H 0.148 0.852 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.679 -14.626 -7.242 16.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.121 4.121 3 C -0.117 4.117 4 C -0.084 4.084 5 C 0.016 3.984 6 H 0.085 0.915 7 N -0.298 5.298 8 C -0.074 4.074 9 C -0.195 4.195 10 C -0.020 4.020 11 H 0.047 0.953 12 C -0.541 4.541 13 H 0.052 0.948 14 C -0.181 4.181 15 N -0.588 5.588 16 Si 0.757 3.243 17 H -0.200 1.200 18 H -0.165 1.165 19 H -0.216 1.216 20 C -0.121 4.121 21 C -0.158 4.158 22 C 0.050 3.950 23 F -0.122 7.122 24 H 0.105 0.895 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.146 0.854 28 H 0.160 0.840 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.165 0.835 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.432 -14.081 -7.644 16.028 hybrid contribution -0.034 -0.411 1.795 1.842 sum 0.399 -14.492 -5.849 15.633 Atomic orbital electron populations 1.20777 0.88776 1.03693 1.03676 1.20139 0.98236 0.91498 1.02251 1.20927 0.93729 0.97651 0.99399 1.20222 0.94266 0.95317 0.98610 1.21227 0.91998 0.92954 0.92175 0.91508 1.62973 1.04173 1.15176 1.47486 1.22962 0.95251 0.98399 0.90783 1.23359 0.97410 1.00281 0.98472 1.20275 0.93029 0.94946 0.93770 0.95286 1.21192 1.39765 1.01200 0.91928 0.94846 1.25804 0.94841 0.96818 1.00594 1.70051 1.49745 1.22662 1.16300 0.85963 0.80037 0.79897 0.78426 1.19974 1.16461 1.21591 1.20925 1.00931 0.90533 0.99670 1.21289 0.91865 1.00247 1.02355 1.17655 0.90645 0.80709 1.05997 1.91441 1.80561 1.45928 1.94242 0.89452 0.90822 0.90547 0.85403 0.83975 0.92107 0.88422 0.93044 0.91815 0.92670 0.83457 0.82137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.61 9.84 71.24 0.70 -1.91 16 2 C -0.12 -3.46 5.89 -19.82 -0.12 -3.58 16 3 C -0.10 -3.22 9.33 22.26 0.21 -3.01 16 4 C -0.08 -2.77 4.75 -19.86 -0.09 -2.87 16 5 C 0.13 4.82 3.27 44.31 0.15 4.97 16 6 H 0.07 2.92 7.39 -2.39 -0.02 2.90 16 7 N -0.67 -21.65 7.39 -484.02 -3.58 -25.23 16 8 C 0.06 1.81 7.55 86.65 0.65 2.46 16 9 C -0.16 -5.93 5.85 31.80 0.19 -5.74 16 10 C 0.00 0.01 2.02 -10.66 -0.02 -0.01 16 11 H 0.03 1.30 5.62 -2.39 -0.01 1.29 16 12 C -0.50 -27.72 8.69 25.60 0.22 -27.49 16 13 H 0.03 2.07 7.76 -2.91 -0.02 2.05 16 14 C 0.02 0.95 5.47 84.65 0.46 1.41 16 15 N -0.95 -58.45 13.96 21.45 0.30 -58.15 16 16 Si 0.93 43.71 26.76 68.60 1.84 45.55 16 17 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.24 -10.31 6.60 99.48 0.66 -9.66 16 19 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 20 C -0.10 -2.79 8.98 22.26 0.20 -2.59 16 21 C -0.14 -3.46 10.03 22.32 0.22 -3.24 16 22 C 0.07 1.91 7.24 22.38 0.16 2.07 16 23 F -0.14 -3.81 16.48 44.97 0.74 -3.07 16 24 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.07 1.59 7.64 -2.39 -0.02 1.57 16 26 H 0.08 1.72 8.09 -2.39 -0.02 1.70 16 27 H 0.13 4.25 8.05 -2.91 -0.02 4.23 16 28 H 0.34 9.12 6.17 -89.69 -0.55 8.57 16 29 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.05 2.17 7.85 -2.39 -0.02 2.15 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 34 H 0.15 3.32 6.55 -2.91 -0.02 3.31 16 35 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -63.81 288.37 2.72 -61.09 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.49 Total: 19.34 kcal Atomic # 6 Polarization: -42.46 SS G_CDS: 2.93 Total: -39.52 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -3.28 Total: -83.38 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.74 Total: -3.07 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.84 Total: 45.55 kcal Total: -63.81 2.72 -61.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260413321.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.309 kcal (2) G-P(sol) polarization free energy of solvation -63.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds