Wall clock time and date at job start Mon Mar 30 2020 06:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.72759 * 2 1 4 4 C 1.54339 * 110.82240 * 236.37784 * 2 1 3 5 5 C 1.51376 * 105.17397 * 268.13035 * 4 2 1 6 6 C 1.38519 * 130.36135 * 162.80602 * 5 4 2 7 7 C 1.38067 * 120.25156 * 180.02562 * 6 5 4 8 8 C 1.38474 * 119.90562 * 359.97438 * 7 6 5 9 9 F 1.35098 * 120.05812 * 180.02562 * 8 7 6 10 10 C 1.38324 * 119.88323 * 0.27825 * 8 7 6 11 11 C 1.38228 * 109.75083 * 342.80975 * 5 4 2 12 12 C 1.51369 * 109.75807 * 359.97438 * 11 5 4 13 13 C 1.50700 * 110.30612 * 258.27701 * 12 11 5 14 14 H 1.07994 * 120.00344 * 117.09613 * 13 12 11 15 15 C 1.37882 * 119.99672 * 297.09740 * 13 12 11 16 16 N 1.31516 * 119.99935 * 351.39065 * 15 13 12 17 17 Si 1.86801 * 119.99899 * 171.39213 * 15 13 12 18 18 H 1.48509 * 109.46948 * 60.00006 * 17 15 13 19 19 H 1.48503 * 109.47167 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47303 * 300.00154 * 17 15 13 21 21 C 1.53001 * 110.30706 * 136.12514 * 12 11 5 22 22 N 1.46899 * 109.47613 * 174.58710 * 21 12 11 23 23 H 1.09009 * 109.47285 * 296.59534 * 1 2 3 24 24 H 1.09000 * 109.47329 * 56.59247 * 1 2 3 25 25 H 1.09003 * 109.47107 * 176.59427 * 1 2 3 26 26 H 1.09000 * 110.30467 * 149.20543 * 4 2 1 27 27 H 1.09006 * 110.30082 * 27.05580 * 4 2 1 28 28 H 1.08002 * 119.87726 * 0.02562 * 6 5 4 29 29 H 1.07994 * 120.04297 * 179.97438 * 7 6 5 30 30 H 1.07998 * 119.90729 * 179.70316 * 10 8 7 31 31 H 0.96994 * 119.99640 * 180.02562 * 16 15 13 32 32 H 1.09006 * 109.46832 * 294.58439 * 21 12 11 33 33 H 1.08999 * 109.47132 * 54.57852 * 21 12 11 34 34 H 1.00900 * 111.00100 * 60.85835 * 22 21 12 35 35 H 1.00904 * 110.99866 * 184.81923 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0786 -0.7988 -1.2013 5 6 2.2640 -2.2104 -0.6870 6 6 2.4203 -3.4025 -1.3750 7 6 2.5756 -4.5884 -0.6853 8 6 2.5757 -4.5868 0.6995 9 9 2.7280 -5.7454 1.3775 10 6 2.4145 -3.3976 1.3873 11 6 2.2639 -2.2077 0.6953 12 6 2.0791 -0.7942 1.2043 13 6 3.4000 -0.2221 1.6503 14 1 3.8118 0.6410 1.1484 15 6 4.0829 -0.8006 2.6992 16 7 3.5095 -1.7405 3.4185 17 14 5.8224 -0.2493 3.0985 18 1 5.8195 1.1989 3.4275 19 1 6.3311 -1.0196 4.2618 20 1 6.6993 -0.4883 1.9242 21 6 1.0735 -0.7722 2.3571 22 7 1.0048 0.5824 2.9214 23 1 -0.3634 0.4601 0.9190 24 1 -0.3634 0.5658 -0.8579 25 1 -0.3633 -1.0259 -0.0611 26 1 3.0338 -0.3859 -1.5255 27 1 1.3620 -0.7865 -2.0226 28 1 2.4207 -3.4043 -2.4550 29 1 2.6967 -5.5159 -1.2250 30 1 2.4097 -3.3966 2.4673 31 1 3.9897 -2.1472 4.1566 32 1 0.0900 -1.0619 1.9869 33 1 1.3913 -1.4721 3.1300 34 1 0.6985 1.2479 2.2276 35 1 0.4068 0.6057 3.7338 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260443344.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:41 Heat of formation + Delta-G solvation = -17.848396 kcal Electronic energy + Delta-G solvation = -19049.102481 eV Core-core repulsion = 16154.158202 eV Total energy + Delta-G solvation = -2894.944279 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.08250 -39.64532 -36.05966 -33.14474 -32.06665 -30.15610 -29.34640 -27.37926 -25.82050 -24.02019 -22.30569 -21.37505 -20.18904 -18.23474 -16.79203 -15.84532 -15.50084 -14.98039 -14.80351 -14.46406 -14.39948 -13.80944 -13.67821 -13.14421 -12.74455 -12.49037 -12.00082 -11.92273 -11.64146 -11.46925 -11.23190 -10.85528 -10.67383 -10.60775 -10.34242 -10.27824 -10.00985 -9.74686 -9.20519 -9.05431 -8.37093 -7.84873 -7.49997 -7.29979 -5.94912 -3.97809 2.07478 2.24052 3.36846 3.40708 3.43765 4.45725 4.57652 5.06404 5.24029 5.32119 5.54348 5.65917 5.75524 5.83428 5.85616 5.93236 6.16919 6.29705 6.32580 6.45226 6.50291 6.58152 6.70313 6.75330 6.91097 6.93139 7.03264 7.10282 7.23574 7.34760 7.60435 7.83351 7.93076 8.04099 8.22536 8.53115 8.60883 8.93831 9.63214 11.06750 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.016334 B = 0.012255 C = 0.009071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.829682 B = 2284.142467 C = 3086.140476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.076 0.924 4 C -0.063 4.063 5 C -0.127 4.127 6 C -0.098 4.098 7 C -0.183 4.183 8 C 0.071 3.929 9 F -0.155 7.155 10 C -0.121 4.121 11 C 0.002 3.998 12 C 0.115 3.885 13 C -0.471 4.471 14 H 0.057 0.943 15 C 0.076 3.924 16 N -0.880 5.880 17 Si 0.890 3.110 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.075 3.925 22 N -0.820 5.820 23 H 0.052 0.948 24 H 0.041 0.959 25 H 0.049 0.951 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.112 0.888 29 H 0.118 0.882 30 H 0.156 0.844 31 H 0.259 0.741 32 H -0.016 1.016 33 H 0.102 0.898 34 H 0.317 0.683 35 H 0.315 0.685 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.070 -0.291 -5.995 7.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 H 0.094 0.906 4 C -0.100 4.100 5 C -0.128 4.128 6 C -0.116 4.116 7 C -0.202 4.202 8 C 0.052 3.948 9 F -0.134 7.134 10 C -0.140 4.140 11 C 0.001 3.999 12 C 0.114 3.886 13 C -0.508 4.508 14 H 0.075 0.925 15 C -0.126 4.126 16 N -0.518 5.518 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.207 1.207 21 C -0.056 4.056 22 N -0.347 5.347 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.130 0.870 29 H 0.136 0.864 30 H 0.174 0.826 31 H 0.069 0.931 32 H 0.002 0.998 33 H 0.119 0.881 34 H 0.130 0.870 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.226 -0.530 -5.679 7.099 hybrid contribution 0.201 -0.212 0.115 0.314 sum -4.024 -0.742 -5.564 6.907 Atomic orbital electron populations 1.21889 0.96705 1.00879 1.00193 1.21959 0.93572 0.99520 0.95793 0.90554 1.20938 1.00298 0.91331 0.97471 1.20692 1.02231 0.94518 0.95320 1.20172 1.01744 0.91090 0.98639 1.20658 1.08521 0.98663 0.92357 1.17772 1.05275 0.81806 0.89936 1.91399 1.93673 1.47638 1.80670 1.21259 1.00406 0.89472 1.02829 1.20920 0.91040 0.95599 0.92332 1.17812 0.95134 0.85946 0.89674 1.20609 1.02582 1.12666 1.14936 0.92483 1.24749 0.97570 0.94995 0.95248 1.69683 1.36280 1.26926 1.18881 0.86686 0.85186 0.78690 0.77547 1.20325 1.21532 1.20700 1.22024 0.93519 0.90310 0.99744 1.58521 1.58676 1.07804 1.09672 0.92911 0.94029 0.93230 0.90963 0.92540 0.86950 0.86443 0.82643 0.93083 0.99788 0.88052 0.87035 0.87493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 7.79 37.16 0.29 -1.97 16 2 C -0.09 -1.69 2.59 -89.21 -0.23 -1.92 16 3 H 0.08 1.45 7.75 -51.93 -0.40 1.05 16 4 C -0.06 -1.14 6.30 -26.85 -0.17 -1.31 16 5 C -0.13 -2.56 6.14 -104.19 -0.64 -3.20 16 6 C -0.10 -1.79 10.04 -39.54 -0.40 -2.19 16 7 C -0.18 -3.42 10.03 -39.56 -0.40 -3.82 16 8 C 0.07 1.51 7.30 -39.46 -0.29 1.22 16 9 F -0.15 -3.23 17.27 2.25 0.04 -3.19 16 10 C -0.12 -2.78 8.75 -39.46 -0.35 -3.13 16 11 C 0.00 0.05 4.62 -104.21 -0.48 -0.43 16 12 C 0.12 2.56 0.27 -155.77 -0.04 2.51 16 13 C -0.47 -11.90 7.41 -34.44 -0.26 -12.15 16 14 H 0.06 1.47 7.60 -52.49 -0.40 1.07 16 15 C 0.08 1.98 5.17 -17.82 -0.09 1.89 16 16 N -0.88 -23.02 8.24 55.43 0.46 -22.56 16 17 Si 0.89 21.15 29.55 -169.99 -5.02 16.13 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.07 1.62 4.68 -3.82 -0.02 1.60 16 22 N -0.82 -16.32 8.91 -10.37 -0.09 -16.41 16 23 H 0.05 0.83 5.26 -51.92 -0.27 0.56 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.84 7.87 -51.93 -0.41 0.43 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.06 0.87 7.91 -51.93 -0.41 0.46 16 28 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 30 H 0.16 3.85 5.87 -52.49 -0.31 3.54 16 31 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 32 H -0.02 -0.32 6.03 -51.93 -0.31 -0.64 16 33 H 0.10 2.50 5.56 -51.93 -0.29 2.21 16 34 H 0.32 5.74 6.94 -39.29 -0.27 5.47 16 35 H 0.31 5.60 9.08 -39.29 -0.36 5.24 16 LS Contribution 276.92 15.07 4.17 4.17 Total: -1.00 -26.54 276.92 -7.77 -34.31 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -4.26 Total: 10.44 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -3.07 Total: -22.90 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.36 Total: -38.97 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.04 Total: -3.19 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -26.54 -7.77 -34.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260443344.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.462 kcal (2) G-P(sol) polarization free energy of solvation -26.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds