Wall clock time and date at job start Mon Mar 30 2020 06:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 110.72759 * 2 1 4 4 C 1.54339 * 110.82240 * 236.37784 * 2 1 3 5 5 C 1.51376 * 105.17397 * 268.13035 * 4 2 1 6 6 C 1.38519 * 130.36135 * 162.80602 * 5 4 2 7 7 C 1.38067 * 120.25156 * 180.02562 * 6 5 4 8 8 C 1.38474 * 119.90562 * 359.97438 * 7 6 5 9 9 F 1.35098 * 120.05812 * 180.02562 * 8 7 6 10 10 C 1.38324 * 119.88323 * 0.27825 * 8 7 6 11 11 C 1.38228 * 109.75083 * 342.80975 * 5 4 2 12 12 C 1.51369 * 109.75807 * 359.97438 * 11 5 4 13 13 C 1.50700 * 110.30612 * 258.27701 * 12 11 5 14 14 H 1.07994 * 120.00344 * 117.09613 * 13 12 11 15 15 C 1.37882 * 119.99672 * 297.09740 * 13 12 11 16 16 N 1.31516 * 119.99935 * 351.39065 * 15 13 12 17 17 Si 1.86801 * 119.99899 * 171.39213 * 15 13 12 18 18 H 1.48509 * 109.46948 * 60.00006 * 17 15 13 19 19 H 1.48503 * 109.47167 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47303 * 300.00154 * 17 15 13 21 21 C 1.53001 * 110.30706 * 136.12514 * 12 11 5 22 22 N 1.46899 * 109.47613 * 174.58710 * 21 12 11 23 23 H 1.09009 * 109.47285 * 296.59534 * 1 2 3 24 24 H 1.09000 * 109.47329 * 56.59247 * 1 2 3 25 25 H 1.09003 * 109.47107 * 176.59427 * 1 2 3 26 26 H 1.09000 * 110.30467 * 149.20543 * 4 2 1 27 27 H 1.09006 * 110.30082 * 27.05580 * 4 2 1 28 28 H 1.08002 * 119.87726 * 0.02562 * 6 5 4 29 29 H 1.07994 * 120.04297 * 179.97438 * 7 6 5 30 30 H 1.07998 * 119.90729 * 179.70316 * 10 8 7 31 31 H 0.96994 * 119.99640 * 180.02562 * 16 15 13 32 32 H 1.09006 * 109.46832 * 294.58439 * 21 12 11 33 33 H 1.08999 * 109.47132 * 54.57852 * 21 12 11 34 34 H 1.00900 * 111.00100 * 60.85835 * 22 21 12 35 35 H 1.00904 * 110.99866 * 184.81923 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0786 -0.7988 -1.2013 5 6 2.2640 -2.2104 -0.6870 6 6 2.4203 -3.4025 -1.3750 7 6 2.5756 -4.5884 -0.6853 8 6 2.5757 -4.5868 0.6995 9 9 2.7280 -5.7454 1.3775 10 6 2.4145 -3.3976 1.3873 11 6 2.2639 -2.2077 0.6953 12 6 2.0791 -0.7942 1.2043 13 6 3.4000 -0.2221 1.6503 14 1 3.8118 0.6410 1.1484 15 6 4.0829 -0.8006 2.6992 16 7 3.5095 -1.7405 3.4185 17 14 5.8224 -0.2493 3.0985 18 1 5.8195 1.1989 3.4275 19 1 6.3311 -1.0196 4.2618 20 1 6.6993 -0.4883 1.9242 21 6 1.0735 -0.7722 2.3571 22 7 1.0048 0.5824 2.9214 23 1 -0.3634 0.4601 0.9190 24 1 -0.3634 0.5658 -0.8579 25 1 -0.3633 -1.0259 -0.0611 26 1 3.0338 -0.3859 -1.5255 27 1 1.3620 -0.7865 -2.0226 28 1 2.4207 -3.4043 -2.4550 29 1 2.6967 -5.5159 -1.2250 30 1 2.4097 -3.3966 2.4673 31 1 3.9897 -2.1472 4.1566 32 1 0.0900 -1.0619 1.9869 33 1 1.3913 -1.4721 3.1300 34 1 0.6985 1.2479 2.2276 35 1 0.4068 0.6057 3.7338 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260443344.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:40 Heat of formation + Delta-G solvation = -32.550736 kcal Electronic energy + Delta-G solvation = -19049.740022 eV Core-core repulsion = 16154.158202 eV Total energy + Delta-G solvation = -2895.581820 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.70967 -41.20368 -37.62403 -34.82690 -33.83097 -31.76684 -30.81197 -29.09071 -27.30147 -25.79416 -23.92959 -22.92071 -21.74196 -19.84733 -18.54170 -17.49136 -17.13884 -16.71063 -16.42994 -16.12438 -16.01767 -15.43175 -15.23641 -14.68311 -14.25517 -14.02848 -13.77663 -13.41570 -13.18981 -13.09237 -12.83658 -12.64388 -12.40409 -12.28474 -11.96777 -11.88246 -11.54907 -11.35744 -10.90435 -10.68349 -10.32458 -9.47151 -9.07128 -8.92174 -7.88257 -5.95817 0.48494 0.69188 1.44170 1.45983 1.49738 2.52092 2.97256 3.34443 3.53487 3.81433 4.02508 4.21901 4.31025 4.38958 4.43785 4.53454 4.73183 4.83740 4.91059 4.95520 5.03383 5.16148 5.20175 5.27315 5.38148 5.41322 5.48960 5.57772 5.64992 5.76424 5.79678 6.14168 6.21519 6.33518 6.43354 6.83872 7.03467 7.12221 7.65658 9.08113 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.016334 B = 0.012255 C = 0.009071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.829682 B = 2284.142467 C = 3086.140476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.088 4.088 3 H 0.072 0.928 4 C -0.059 4.059 5 C -0.132 4.132 6 C -0.090 4.090 7 C -0.172 4.172 8 C 0.052 3.948 9 F -0.159 7.159 10 C -0.146 4.146 11 C -0.025 4.025 12 C 0.105 3.895 13 C -0.475 4.475 14 H 0.047 0.953 15 C 0.037 3.963 16 N -0.890 5.890 17 Si 0.929 3.071 18 H -0.277 1.277 19 H -0.295 1.295 20 H -0.283 1.283 21 C 0.085 3.915 22 N -0.829 5.829 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.156 0.844 29 H 0.151 0.849 30 H 0.126 0.874 31 H 0.250 0.750 32 H -0.006 1.006 33 H 0.066 0.934 34 H 0.330 0.670 35 H 0.326 0.674 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.734 0.024 -8.651 10.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.106 4.106 3 H 0.091 0.909 4 C -0.096 4.096 5 C -0.132 4.132 6 C -0.108 4.108 7 C -0.191 4.191 8 C 0.033 3.967 9 F -0.138 7.138 10 C -0.165 4.165 11 C -0.027 4.027 12 C 0.105 3.895 13 C -0.513 4.513 14 H 0.065 0.935 15 C -0.162 4.162 16 N -0.529 5.529 17 Si 0.757 3.243 18 H -0.202 1.202 19 H -0.222 1.222 20 H -0.209 1.209 21 C -0.046 4.046 22 N -0.358 5.358 23 H 0.070 0.930 24 H 0.090 0.910 25 H 0.060 0.940 26 H 0.091 0.909 27 H 0.109 0.891 28 H 0.174 0.826 29 H 0.169 0.831 30 H 0.144 0.856 31 H 0.060 0.940 32 H 0.012 0.988 33 H 0.084 0.916 34 H 0.144 0.856 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.897 -0.203 -8.337 9.671 hybrid contribution 0.390 -0.321 0.930 1.058 sum -4.507 -0.524 -7.407 8.687 Atomic orbital electron populations 1.21814 0.94620 1.00907 1.01608 1.21913 0.95287 0.98794 0.94634 0.90948 1.20968 1.01200 0.89570 0.97877 1.21076 1.01429 0.96345 0.94367 1.20636 0.99508 0.89871 1.00738 1.21054 1.06447 1.00507 0.91079 1.17986 1.06340 0.81164 0.91220 1.91380 1.93808 1.47593 1.81022 1.21142 1.02553 0.91045 1.01741 1.21017 0.92489 0.95303 0.93852 1.17877 0.93869 0.86611 0.91165 1.20844 1.03929 1.12136 1.14407 0.93511 1.25255 0.99527 0.95573 0.95891 1.69860 1.36438 1.27609 1.18958 0.86088 0.83114 0.78171 0.76898 1.20244 1.22151 1.20898 1.21760 0.93815 0.90317 0.98668 1.58426 1.59510 1.07351 1.10557 0.92974 0.90982 0.94017 0.90932 0.89121 0.82644 0.83083 0.85592 0.94048 0.98792 0.91601 0.85648 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.91 7.79 71.98 0.56 -3.34 16 2 C -0.09 -3.12 2.59 -9.88 -0.03 -3.14 16 3 H 0.07 2.61 7.75 -2.38 -0.02 2.59 16 4 C -0.06 -1.93 6.30 30.52 0.19 -1.74 16 5 C -0.13 -4.97 6.14 -19.58 -0.12 -5.09 16 6 C -0.09 -2.91 10.04 22.30 0.22 -2.69 16 7 C -0.17 -5.93 10.03 22.29 0.22 -5.71 16 8 C 0.05 2.18 7.30 22.35 0.16 2.34 16 9 F -0.16 -6.65 17.27 44.97 0.78 -5.87 16 10 C -0.15 -6.86 8.75 22.35 0.20 -6.67 16 11 C -0.03 -1.13 4.62 -19.60 -0.09 -1.22 16 12 C 0.11 4.65 0.27 -53.00 -0.01 4.64 16 13 C -0.48 -24.19 7.41 25.60 0.19 -24.00 16 14 H 0.05 2.41 7.60 -2.91 -0.02 2.39 16 15 C 0.04 1.97 5.17 84.66 0.44 2.41 16 16 N -0.89 -48.36 8.24 21.45 0.18 -48.18 16 17 Si 0.93 44.05 29.55 68.60 2.03 46.07 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 19 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 20 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 21 C 0.09 3.74 4.68 86.30 0.40 4.14 16 22 N -0.83 -32.85 8.91 -186.71 -1.66 -34.51 16 23 H 0.05 1.53 5.26 -2.38 -0.01 1.51 16 24 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.04 1.29 7.87 -2.39 -0.02 1.27 16 26 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.09 2.34 7.91 -2.38 -0.02 2.32 16 28 H 0.16 3.73 8.06 -2.91 -0.02 3.70 16 29 H 0.15 4.15 8.06 -2.91 -0.02 4.12 16 30 H 0.13 6.61 5.87 -2.91 -0.02 6.59 16 31 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 32 H -0.01 -0.23 6.03 -2.38 -0.01 -0.25 16 33 H 0.07 3.38 5.56 -2.39 -0.01 3.37 16 34 H 0.33 11.57 6.94 -89.69 -0.62 10.95 16 35 H 0.33 11.54 9.08 -89.69 -0.81 10.72 16 Total: -1.00 -58.13 276.92 3.35 -54.78 By element: Atomic # 1 Polarization: 28.09 SS G_CDS: -0.31 Total: 27.79 kcal Atomic # 6 Polarization: -42.41 SS G_CDS: 2.34 Total: -40.07 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -1.49 Total: -82.69 kcal Atomic # 9 Polarization: -6.65 SS G_CDS: 0.78 Total: -5.87 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -58.13 3.35 -54.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260443344.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.229 kcal (2) G-P(sol) polarization free energy of solvation -58.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds