Wall clock time and date at job start Mon Mar 30 2020 06:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.87715 * 2 1 4 4 C 1.54339 * 110.82284 * 236.49193 * 2 1 3 5 5 C 1.51380 * 105.16824 * 268.12990 * 4 2 1 6 6 C 1.38518 * 130.35329 * 162.80070 * 5 4 2 7 7 C 1.38061 * 120.24588 * 179.97438 * 6 5 4 8 8 C 1.38476 * 119.91162 * 0.02562 * 7 6 5 9 9 F 1.35096 * 120.06022 * 180.02562 * 8 7 6 10 10 C 1.38323 * 119.87843 * 359.97438 * 8 7 6 11 11 C 1.38227 * 109.75314 * 342.79796 * 5 4 2 12 12 C 1.51375 * 109.75797 * 0.02562 * 11 5 4 13 13 C 1.50709 * 110.30347 * 136.10449 * 12 11 5 14 14 H 1.08004 * 119.99668 * 354.53247 * 13 12 11 15 15 C 1.37875 * 120.00040 * 174.52326 * 13 12 11 16 16 N 1.31515 * 119.99864 * 15.80646 * 15 13 12 17 17 Si 1.86801 * 120.00055 * 195.79821 * 15 13 12 18 18 H 1.48500 * 109.46984 * 180.02562 * 17 15 13 19 19 H 1.48500 * 109.47061 * 300.00413 * 17 15 13 20 20 H 1.48496 * 109.46930 * 60.00524 * 17 15 13 21 21 C 1.52991 * 110.30841 * 258.16198 * 12 11 5 22 22 N 1.46899 * 109.47114 * 295.41680 * 21 12 11 23 23 H 1.09005 * 109.47431 * 298.94144 * 1 2 3 24 24 H 1.09000 * 109.47336 * 58.94739 * 1 2 3 25 25 H 1.09000 * 109.46977 * 178.94384 * 1 2 3 26 26 H 1.09004 * 110.30430 * 149.20792 * 4 2 1 27 27 H 1.08996 * 110.30525 * 27.05111 * 4 2 1 28 28 H 1.07995 * 119.87709 * 359.96926 * 6 5 4 29 29 H 1.08004 * 120.04286 * 180.02562 * 7 6 5 30 30 H 1.08004 * 119.90083 * 179.97438 * 10 8 7 31 31 H 0.96999 * 120.00120 * 1.56360 * 16 15 13 32 32 H 1.08998 * 109.47139 * 55.41294 * 21 12 11 33 33 H 1.08997 * 109.47763 * 175.41010 * 21 12 11 34 34 H 1.00906 * 111.00238 * 180.64180 * 22 21 12 35 35 H 1.00902 * 110.99750 * 304.58821 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0185 0.0000 4 6 2.0786 -0.7964 -1.2028 5 6 2.2640 -2.2090 -0.6912 6 6 2.4202 -3.3997 -1.3816 7 6 2.5765 -4.5868 -0.6942 8 6 2.5768 -4.5880 0.6905 9 9 2.7300 -5.7478 1.3662 10 6 2.4209 -3.3994 1.3807 11 6 2.2642 -2.2090 0.6910 12 6 2.0783 -0.7966 1.2028 13 6 1.0875 -0.7779 2.3383 14 1 0.5615 -1.6809 2.6109 15 6 0.8527 0.3920 3.0291 16 7 1.2381 1.5431 2.5232 17 14 -0.0130 0.3419 4.6836 18 1 -0.1437 1.7221 5.2159 19 1 -1.3630 -0.2542 4.5181 20 1 0.7790 -0.4819 5.6319 21 6 3.4184 -0.2165 1.6591 22 7 3.9176 -0.9827 2.8088 23 1 -0.3634 0.4973 0.8993 24 1 -0.3634 0.5301 -0.8804 25 1 -0.3633 -1.0275 -0.0189 26 1 3.0339 -0.3829 -1.5262 27 1 1.3622 -0.7826 -2.0241 28 1 2.4195 -3.3994 -2.4616 29 1 2.6984 -5.5132 -1.2359 30 1 2.4206 -3.4000 2.4607 31 1 1.6672 1.5714 1.6537 32 1 4.1376 -0.2771 0.8423 33 1 3.2838 0.8259 1.9479 34 1 4.7974 -0.6122 3.1358 35 1 3.2358 -1.0044 3.5523 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260443348.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:44 Heat of formation + Delta-G solvation = -27.835544 kcal Electronic energy + Delta-G solvation = -19008.415519 eV Core-core repulsion = 16113.038166 eV Total energy + Delta-G solvation = -2895.377354 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.33478 -39.86788 -36.35598 -33.36690 -32.06913 -30.50323 -29.24225 -27.12854 -25.75944 -24.34635 -22.43409 -21.26852 -20.14690 -18.93122 -17.31416 -16.05314 -15.65241 -15.06307 -14.83730 -14.75348 -14.20143 -13.83304 -13.47065 -13.29038 -13.03586 -12.59203 -12.18994 -12.01070 -11.77308 -11.54057 -11.38683 -10.87329 -10.79901 -10.64894 -10.33832 -10.15230 -10.03101 -9.71090 -9.58904 -8.77834 -8.26747 -8.15220 -7.77816 -7.60265 -6.39073 -4.12699 1.80907 1.96518 3.36327 3.39538 3.56554 4.27095 4.43635 4.81452 5.06559 5.18796 5.37678 5.51993 5.64622 5.70380 5.86965 5.97200 6.09838 6.24922 6.33129 6.39906 6.53991 6.55985 6.64525 6.69261 6.76699 6.84596 6.91346 6.97054 7.17882 7.30596 7.42331 7.54162 7.60987 8.08050 8.21041 8.34566 8.49781 8.78150 9.50107 10.89851 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.022446 B = 0.009597 C = 0.008173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.147037 B = 2916.899161 C = 3425.130428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.083 4.083 3 H 0.067 0.933 4 C -0.078 4.078 5 C -0.124 4.124 6 C -0.093 4.093 7 C -0.176 4.176 8 C 0.078 3.922 9 F -0.151 7.151 10 C -0.116 4.116 11 C 0.008 3.992 12 C 0.096 3.904 13 C -0.577 4.577 14 H 0.052 0.948 15 C 0.029 3.971 16 N -0.904 5.904 17 Si 1.052 2.948 18 H -0.285 1.285 19 H -0.288 1.288 20 H -0.287 1.287 21 C 0.076 3.924 22 N -0.842 5.842 23 H 0.078 0.922 24 H 0.021 0.979 25 H 0.041 0.959 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.117 0.883 29 H 0.123 0.877 30 H 0.132 0.868 31 H 0.278 0.722 32 H 0.034 0.966 33 H 0.041 0.959 34 H 0.316 0.684 35 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.289 -4.685 -4.818 7.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.102 4.102 3 H 0.085 0.915 4 C -0.115 4.115 5 C -0.124 4.124 6 C -0.111 4.111 7 C -0.195 4.195 8 C 0.059 3.941 9 F -0.130 7.130 10 C -0.134 4.134 11 C 0.008 3.992 12 C 0.096 3.904 13 C -0.615 4.615 14 H 0.071 0.929 15 C -0.177 4.177 16 N -0.541 5.541 17 Si 0.881 3.119 18 H -0.210 1.210 19 H -0.215 1.215 20 H -0.213 1.213 21 C -0.055 4.055 22 N -0.371 5.371 23 H 0.097 0.903 24 H 0.040 0.960 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.135 0.865 29 H 0.141 0.859 30 H 0.150 0.850 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.126 0.874 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.773 -4.378 -4.044 6.218 hybrid contribution 0.500 -0.428 -0.681 0.947 sum 2.274 -4.806 -4.726 7.113 Atomic orbital electron populations 1.21520 0.94591 1.00515 1.00446 1.22032 0.96522 0.97881 0.93815 0.91483 1.21191 1.00160 0.91245 0.98912 1.20814 1.01456 0.94932 0.95227 1.20266 1.00858 0.90942 0.99014 1.20719 1.07641 0.98856 0.92264 1.17614 1.04897 0.81511 0.90037 1.91421 1.93575 1.47351 1.80681 1.20590 1.01798 0.89965 1.01091 1.20601 0.90663 0.95643 0.92319 1.18031 0.92984 0.85866 0.93569 1.21642 1.25310 0.98175 1.16389 0.92923 1.25579 0.97115 0.92037 1.02952 1.70857 1.37140 1.26100 1.19998 0.83776 0.76410 0.75840 0.75913 1.21033 1.21469 1.21334 1.21704 0.95418 0.96060 0.92355 1.58780 1.07431 1.58713 1.12219 0.90327 0.95966 0.94013 0.91597 0.91913 0.86520 0.85943 0.84979 0.90858 0.94736 0.94048 0.87405 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.39 8.19 37.16 0.30 -2.08 16 2 C -0.08 -1.71 2.05 -89.22 -0.18 -1.90 16 3 H 0.07 1.43 6.45 -51.92 -0.34 1.10 16 4 C -0.08 -1.40 6.30 -26.85 -0.17 -1.57 16 5 C -0.12 -2.37 6.14 -104.19 -0.64 -3.01 16 6 C -0.09 -1.56 10.04 -39.54 -0.40 -1.96 16 7 C -0.18 -2.98 10.03 -39.56 -0.40 -3.37 16 8 C 0.08 1.49 7.30 -39.46 -0.29 1.20 16 9 F -0.15 -2.81 17.27 2.25 0.04 -2.77 16 10 C -0.12 -2.40 9.42 -39.47 -0.37 -2.77 16 11 C 0.01 0.17 4.68 -104.21 -0.49 -0.32 16 12 C 0.10 2.11 0.24 -155.78 -0.04 2.08 16 13 C -0.58 -13.99 5.08 -34.44 -0.17 -14.17 16 14 H 0.05 1.36 7.68 -52.48 -0.40 0.95 16 15 C 0.03 0.71 3.94 -17.82 -0.07 0.64 16 16 N -0.90 -23.49 12.10 55.43 0.67 -22.82 16 17 Si 1.05 23.02 29.93 -169.99 -5.09 17.93 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.29 -6.06 7.11 56.52 0.40 -5.66 16 21 C 0.08 1.63 5.30 -3.83 -0.02 1.61 16 22 N -0.84 -16.93 9.15 -10.37 -0.09 -17.03 16 23 H 0.08 1.85 5.83 -51.93 -0.30 1.55 16 24 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.06 1.03 7.91 -51.93 -0.41 0.61 16 28 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 29 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 30 H 0.13 2.82 8.06 -52.48 -0.42 2.39 16 31 H 0.28 7.06 3.96 -40.82 -0.16 6.90 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.97 5.72 -51.93 -0.30 0.67 16 34 H 0.32 5.60 9.08 -39.29 -0.36 5.24 16 35 H 0.35 7.49 7.72 -39.29 -0.30 7.18 16 LS Contribution 279.59 15.07 4.21 4.21 Total: -1.00 -25.56 279.59 -7.52 -33.07 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -4.33 Total: 13.02 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -2.93 Total: -25.62 kcal Atomic # 7 Polarization: -40.42 SS G_CDS: 0.58 Total: -39.85 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.04 Total: -2.77 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.09 Total: 17.93 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -25.56 -7.52 -33.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260443348.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.238 kcal (2) G-P(sol) polarization free energy of solvation -25.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds