Wall clock time and date at job start Mon Mar 30 2020 06:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 110.87715 * 2 1 4 4 C 1.54339 * 110.82284 * 236.49193 * 2 1 3 5 5 C 1.51380 * 105.16824 * 268.12990 * 4 2 1 6 6 C 1.38518 * 130.35329 * 162.80070 * 5 4 2 7 7 C 1.38061 * 120.24588 * 179.97438 * 6 5 4 8 8 C 1.38476 * 119.91162 * 0.02562 * 7 6 5 9 9 F 1.35096 * 120.06022 * 180.02562 * 8 7 6 10 10 C 1.38323 * 119.87843 * 359.97438 * 8 7 6 11 11 C 1.38227 * 109.75314 * 342.79796 * 5 4 2 12 12 C 1.51375 * 109.75797 * 0.02562 * 11 5 4 13 13 C 1.50709 * 110.30347 * 136.10449 * 12 11 5 14 14 H 1.08004 * 119.99668 * 354.53247 * 13 12 11 15 15 C 1.37875 * 120.00040 * 174.52326 * 13 12 11 16 16 N 1.31515 * 119.99864 * 15.80646 * 15 13 12 17 17 Si 1.86801 * 120.00055 * 195.79821 * 15 13 12 18 18 H 1.48500 * 109.46984 * 180.02562 * 17 15 13 19 19 H 1.48500 * 109.47061 * 300.00413 * 17 15 13 20 20 H 1.48496 * 109.46930 * 60.00524 * 17 15 13 21 21 C 1.52991 * 110.30841 * 258.16198 * 12 11 5 22 22 N 1.46899 * 109.47114 * 295.41680 * 21 12 11 23 23 H 1.09005 * 109.47431 * 298.94144 * 1 2 3 24 24 H 1.09000 * 109.47336 * 58.94739 * 1 2 3 25 25 H 1.09000 * 109.46977 * 178.94384 * 1 2 3 26 26 H 1.09004 * 110.30430 * 149.20792 * 4 2 1 27 27 H 1.08996 * 110.30525 * 27.05111 * 4 2 1 28 28 H 1.07995 * 119.87709 * 359.96926 * 6 5 4 29 29 H 1.08004 * 120.04286 * 180.02562 * 7 6 5 30 30 H 1.08004 * 119.90083 * 179.97438 * 10 8 7 31 31 H 0.96999 * 120.00120 * 1.56360 * 16 15 13 32 32 H 1.08998 * 109.47139 * 55.41294 * 21 12 11 33 33 H 1.08997 * 109.47763 * 175.41010 * 21 12 11 34 34 H 1.00906 * 111.00238 * 180.64180 * 22 21 12 35 35 H 1.00902 * 110.99750 * 304.58821 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0185 0.0000 4 6 2.0786 -0.7964 -1.2028 5 6 2.2640 -2.2090 -0.6912 6 6 2.4202 -3.3997 -1.3816 7 6 2.5765 -4.5868 -0.6942 8 6 2.5768 -4.5880 0.6905 9 9 2.7300 -5.7478 1.3662 10 6 2.4209 -3.3994 1.3807 11 6 2.2642 -2.2090 0.6910 12 6 2.0783 -0.7966 1.2028 13 6 1.0875 -0.7779 2.3383 14 1 0.5615 -1.6809 2.6109 15 6 0.8527 0.3920 3.0291 16 7 1.2381 1.5431 2.5232 17 14 -0.0130 0.3419 4.6836 18 1 -0.1437 1.7221 5.2159 19 1 -1.3630 -0.2542 4.5181 20 1 0.7790 -0.4819 5.6319 21 6 3.4184 -0.2165 1.6591 22 7 3.9176 -0.9827 2.8088 23 1 -0.3634 0.4973 0.8993 24 1 -0.3634 0.5301 -0.8804 25 1 -0.3633 -1.0275 -0.0189 26 1 3.0339 -0.3829 -1.5262 27 1 1.3622 -0.7826 -2.0241 28 1 2.4195 -3.3994 -2.4616 29 1 2.6984 -5.5132 -1.2359 30 1 2.4206 -3.4000 2.4607 31 1 1.6672 1.5714 1.6537 32 1 4.1376 -0.2771 0.8423 33 1 3.2838 0.8259 1.9479 34 1 4.7974 -0.6122 3.1358 35 1 3.2358 -1.0044 3.5523 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260443348.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:44 Heat of formation + Delta-G solvation = -41.378012 kcal Electronic energy + Delta-G solvation = -19009.002765 eV Core-core repulsion = 16113.038166 eV Total energy + Delta-G solvation = -2895.964599 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.78998 -41.40965 -37.92061 -34.98471 -33.86955 -31.98720 -30.80963 -28.77389 -27.34847 -26.13902 -23.97601 -22.82057 -21.65441 -20.60995 -19.02621 -17.58986 -17.21150 -16.53875 -16.36104 -16.28350 -15.77792 -15.63949 -15.14070 -14.77821 -14.49477 -14.17850 -13.90615 -13.66885 -13.38787 -13.10762 -12.90637 -12.56041 -12.46979 -12.24215 -12.01537 -11.85279 -11.65988 -11.32575 -11.18998 -10.57836 -10.12752 -9.64412 -9.40598 -9.13857 -8.33854 -6.06909 0.35024 0.53907 1.57953 1.59288 1.79128 2.60182 2.82742 3.26634 3.37152 3.70934 3.82476 4.06005 4.15722 4.28131 4.33211 4.52487 4.53401 4.75108 4.79454 4.81249 4.92841 4.97248 5.07670 5.22924 5.26337 5.29586 5.31716 5.36561 5.62003 5.65690 5.75130 5.95605 6.14000 6.28239 6.38478 6.50869 6.80918 6.91302 7.58993 8.96117 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.022446 B = 0.009597 C = 0.008173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.147037 B = 2916.899161 C = 3425.130428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.085 4.085 3 H 0.055 0.945 4 C -0.069 4.069 5 C -0.131 4.131 6 C -0.082 4.082 7 C -0.164 4.164 8 C 0.067 3.933 9 F -0.152 7.152 10 C -0.136 4.136 11 C -0.020 4.020 12 C 0.090 3.910 13 C -0.571 4.571 14 H 0.029 0.971 15 C -0.001 4.001 16 N -0.926 5.926 17 Si 1.083 2.917 18 H -0.292 1.292 19 H -0.285 1.285 20 H -0.276 1.276 21 C 0.084 3.916 22 N -0.839 5.839 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.032 0.968 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.158 0.842 29 H 0.158 0.842 30 H 0.111 0.889 31 H 0.275 0.725 32 H 0.041 0.959 33 H 0.019 0.981 34 H 0.330 0.670 35 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.691 -5.819 -6.858 9.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.104 4.104 3 H 0.074 0.926 4 C -0.106 4.106 5 C -0.131 4.131 6 C -0.100 4.100 7 C -0.182 4.182 8 C 0.048 3.952 9 F -0.131 7.131 10 C -0.155 4.155 11 C -0.020 4.020 12 C 0.089 3.911 13 C -0.609 4.609 14 H 0.047 0.953 15 C -0.202 4.202 16 N -0.565 5.565 17 Si 0.910 3.090 18 H -0.218 1.218 19 H -0.211 1.211 20 H -0.202 1.202 21 C -0.048 4.048 22 N -0.368 5.368 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.100 0.900 27 H 0.104 0.896 28 H 0.176 0.824 29 H 0.176 0.824 30 H 0.129 0.871 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.037 0.963 34 H 0.141 0.859 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.190 -5.525 -6.086 8.507 hybrid contribution 0.386 -0.138 -0.060 0.415 sum 2.577 -5.664 -6.146 8.746 Atomic orbital electron populations 1.21392 0.95041 0.99739 1.00016 1.21941 0.96120 0.97515 0.94861 0.92619 1.21125 1.01388 0.90092 0.98017 1.21047 1.01424 0.96312 0.94355 1.20681 0.98667 0.89644 1.01003 1.21128 1.05386 1.00512 0.91172 1.17770 1.05386 0.80889 0.91123 1.91416 1.93619 1.47139 1.80944 1.20529 1.03531 0.91082 1.00332 1.20561 0.92778 0.94983 0.93706 1.18041 0.92382 0.87290 0.93387 1.21669 1.25238 0.96799 1.17225 0.95296 1.26277 0.97421 0.91900 1.04643 1.70905 1.38658 1.26599 1.20317 0.83341 0.76133 0.75447 0.74108 1.21777 1.21112 1.20164 1.21585 0.95629 0.94786 0.92776 1.58752 1.07771 1.58543 1.11715 0.93510 0.93522 0.94886 0.89978 0.89615 0.82424 0.82413 0.87066 0.91205 0.94048 0.96273 0.85917 0.84471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.35 8.19 71.98 0.59 -3.76 16 2 C -0.08 -3.44 2.05 -9.89 -0.02 -3.46 16 3 H 0.06 2.37 6.45 -2.38 -0.02 2.36 16 4 C -0.07 -2.29 6.30 30.52 0.19 -2.10 16 5 C -0.13 -4.65 6.14 -19.58 -0.12 -4.77 16 6 C -0.08 -2.40 10.04 22.29 0.22 -2.18 16 7 C -0.16 -4.89 10.03 22.28 0.22 -4.66 16 8 C 0.07 2.45 7.30 22.35 0.16 2.61 16 9 F -0.15 -5.46 17.27 44.97 0.78 -4.68 16 10 C -0.14 -5.62 9.42 22.34 0.21 -5.41 16 11 C -0.02 -0.83 4.68 -19.60 -0.09 -0.93 16 12 C 0.09 3.95 0.24 -53.01 -0.01 3.94 16 13 C -0.57 -28.35 5.08 25.60 0.13 -28.22 16 14 H 0.03 1.54 7.68 -2.91 -0.02 1.52 16 15 C 0.00 -0.03 3.94 84.65 0.33 0.30 16 16 N -0.93 -49.14 12.10 21.45 0.26 -48.88 16 17 Si 1.08 47.40 29.93 68.60 2.05 49.45 16 18 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 20 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 21 C 0.08 3.62 5.30 86.30 0.46 4.07 16 22 N -0.84 -34.04 9.15 -186.74 -1.71 -35.75 16 23 H 0.05 2.23 5.83 -2.38 -0.01 2.21 16 24 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.09 2.45 7.91 -2.39 -0.02 2.43 16 28 H 0.16 3.35 8.06 -2.91 -0.02 3.32 16 29 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 30 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 31 H 0.27 14.30 3.96 -92.71 -0.37 13.93 16 32 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.02 0.91 5.72 -2.39 -0.01 0.90 16 34 H 0.33 11.65 9.08 -89.69 -0.81 10.84 16 35 H 0.34 14.95 7.72 -89.69 -0.69 14.26 16 Total: -1.00 -55.32 279.59 3.67 -51.64 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: 0.01 Total: 32.77 kcal Atomic # 6 Polarization: -46.84 SS G_CDS: 2.28 Total: -44.56 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -1.45 Total: -84.64 kcal Atomic # 9 Polarization: -5.46 SS G_CDS: 0.78 Total: -4.68 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.05 Total: 49.45 kcal Total: -55.32 3.67 -51.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260443348.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.267 kcal (2) G-P(sol) polarization free energy of solvation -55.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds