Wall clock time and date at job start Mon Mar 30 2020 06:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.88216 * 2 1 4 4 C 1.54350 * 110.82283 * 123.50633 * 2 1 3 5 5 C 1.51381 * 105.17027 * 91.86904 * 4 2 1 6 6 C 1.38512 * 130.36234 * 197.19146 * 5 4 2 7 7 C 1.38061 * 120.25318 * 179.97438 * 6 5 4 8 8 C 1.38470 * 119.90893 * 0.02562 * 7 6 5 9 9 F 1.35099 * 120.06357 * 180.02562 * 8 7 6 10 10 C 1.38330 * 119.87960 * 0.27686 * 8 7 6 11 11 C 1.38241 * 109.75110 * 17.19577 * 5 4 2 12 12 C 1.51379 * 109.75732 * 359.97438 * 11 5 4 13 13 C 1.50695 * 110.30361 * 223.88295 * 12 11 5 14 14 H 1.07997 * 120.00123 * 358.63210 * 13 12 11 15 15 C 1.37871 * 120.00188 * 178.62659 * 13 12 11 16 16 N 1.31518 * 119.99871 * 1.96285 * 15 13 12 17 17 Si 1.86800 * 120.00367 * 181.95749 * 15 13 12 18 18 H 1.48502 * 109.46873 * 90.00443 * 17 15 13 19 19 H 1.48495 * 109.47129 * 210.00108 * 17 15 13 20 20 H 1.48503 * 109.47128 * 330.00527 * 17 15 13 21 21 C 1.53006 * 110.29959 * 101.73194 * 12 11 5 22 22 N 1.46892 * 109.46978 * 68.12697 * 21 12 11 23 23 H 1.08998 * 109.47577 * 290.16547 * 1 2 3 24 24 H 1.08996 * 109.47605 * 50.16404 * 1 2 3 25 25 H 1.09004 * 109.47325 * 170.16926 * 1 2 3 26 26 H 1.08994 * 110.30388 * 332.95126 * 4 2 1 27 27 H 1.08997 * 110.30191 * 210.78915 * 4 2 1 28 28 H 1.07998 * 119.87152 * 0.02562 * 6 5 4 29 29 H 1.08002 * 120.04436 * 180.02562 * 7 6 5 30 30 H 1.07998 * 119.90009 * 179.72718 * 10 8 7 31 31 H 0.97006 * 120.00211 * 179.97438 * 16 15 13 32 32 H 1.09001 * 109.46748 * 188.12834 * 21 12 11 33 33 H 1.08996 * 109.47179 * 308.12402 * 21 12 11 34 34 H 1.00901 * 111.00502 * 66.51767 * 22 21 12 35 35 H 1.00903 * 110.99763 * 190.46798 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0786 -0.7964 1.2029 5 6 2.2640 -2.2091 0.6914 6 6 2.4203 -3.3997 1.3817 7 6 2.5755 -4.5870 0.6944 8 6 2.5756 -4.5882 -0.6903 9 9 2.7268 -5.7483 -1.3661 10 6 2.4258 -3.3988 -1.3805 11 6 2.2640 -2.2091 -0.6910 12 6 2.0780 -0.7967 -1.2027 13 6 1.0875 -0.7781 -2.3382 14 1 0.6442 -1.7005 -2.6833 15 6 0.7469 0.4164 -2.9365 16 7 1.3153 1.5349 -2.5422 17 14 -0.5218 0.4463 -4.3073 18 1 -1.8746 0.6377 -3.7256 19 1 -0.2199 1.5643 -5.2368 20 1 -0.4793 -0.8395 -5.0491 21 6 3.4187 -0.2158 -1.6568 22 7 3.8790 -0.9266 -2.8570 23 1 -0.3634 0.3543 0.9646 24 1 -0.3634 0.6583 -0.7891 25 1 -0.3634 -1.0126 -0.1755 26 1 1.3621 -0.7826 2.0242 27 1 3.0339 -0.3829 1.5263 28 1 2.4199 -3.3995 2.4617 29 1 2.6967 -5.5135 1.2360 30 1 2.4303 -3.3989 -2.4605 31 1 1.0760 2.3754 -2.9634 32 1 3.2970 0.8429 -1.8858 33 1 4.1539 -0.3331 -0.8607 34 1 3.2692 -0.7462 -3.6404 35 1 4.8330 -0.6832 -3.0779 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260443353.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:48 Heat of formation + Delta-G solvation = -28.197535 kcal Electronic energy + Delta-G solvation = -18945.290019 eV Core-core repulsion = 16049.896968 eV Total energy + Delta-G solvation = -2895.393051 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.26650 -39.64544 -36.02128 -33.13844 -31.99636 -30.42235 -29.19951 -27.27417 -25.60555 -24.34239 -22.32796 -21.09941 -19.93135 -18.92672 -16.67027 -15.83912 -15.39120 -14.96450 -14.81451 -14.68097 -14.41400 -13.92098 -13.24200 -13.21175 -12.92319 -12.53736 -12.06389 -11.75915 -11.62833 -11.31167 -11.12685 -10.99747 -10.86568 -10.63020 -10.36450 -10.15405 -9.84787 -9.49917 -9.36615 -8.85685 -8.45553 -8.08570 -7.70449 -7.35852 -6.06880 -4.11414 1.89812 2.05253 3.23823 3.32179 3.36790 4.31733 4.41353 4.89948 5.15376 5.23573 5.51135 5.61978 5.82741 5.83806 6.03366 6.11197 6.25973 6.37763 6.53233 6.58325 6.74847 6.76423 6.82624 6.85326 6.88183 6.99355 7.15611 7.33846 7.38765 7.54797 7.61968 7.68183 7.72952 7.90788 8.28160 8.44949 8.62436 8.88340 9.49444 10.94537 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.022703 B = 0.009316 C = 0.008244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.042101 B = 3004.834571 C = 3395.642146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.064 4.064 3 H 0.076 0.924 4 C -0.082 4.082 5 C -0.123 4.123 6 C -0.094 4.094 7 C -0.178 4.178 8 C 0.076 3.924 9 F -0.153 7.153 10 C -0.119 4.119 11 C 0.001 3.999 12 C 0.113 3.887 13 C -0.485 4.485 14 H 0.057 0.943 15 C 0.067 3.933 16 N -0.887 5.887 17 Si 0.883 3.117 18 H -0.281 1.281 19 H -0.289 1.289 20 H -0.274 1.274 21 C 0.082 3.918 22 N -0.843 5.843 23 H 0.017 0.983 24 H 0.067 0.933 25 H 0.042 0.958 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.133 0.867 31 H 0.259 0.741 32 H 0.065 0.935 33 H 0.023 0.977 34 H 0.346 0.654 35 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.264 -3.729 4.948 6.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.083 4.083 3 H 0.095 0.905 4 C -0.119 4.119 5 C -0.123 4.123 6 C -0.112 4.112 7 C -0.197 4.197 8 C 0.057 3.943 9 F -0.132 7.132 10 C -0.137 4.137 11 C 0.001 3.999 12 C 0.112 3.888 13 C -0.524 4.524 14 H 0.075 0.925 15 C -0.134 4.134 16 N -0.526 5.526 17 Si 0.711 3.289 18 H -0.207 1.207 19 H -0.215 1.215 20 H -0.199 1.199 21 C -0.048 4.048 22 N -0.371 5.371 23 H 0.036 0.964 24 H 0.086 0.914 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.134 0.866 29 H 0.139 0.861 30 H 0.150 0.850 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.159 0.841 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.128 -4.232 5.302 7.110 hybrid contribution -0.540 0.692 -1.261 1.536 sum 1.588 -3.540 4.041 5.602 Atomic orbital electron populations 1.21466 0.95347 1.01277 0.98452 1.21692 0.95721 0.98564 0.92336 0.90533 1.21289 1.00123 0.91226 0.99297 1.20868 1.01169 0.94988 0.95277 1.20272 1.00976 0.91022 0.98958 1.20699 1.07884 0.98815 0.92261 1.17640 1.05096 0.81498 0.90046 1.91415 1.93639 1.47419 1.80703 1.20623 1.01991 0.89992 1.01122 1.20883 0.90368 0.96184 0.92469 1.17863 0.93174 0.84501 0.93218 1.20870 1.23058 0.93055 1.15374 0.92464 1.24849 0.96204 0.95686 0.96674 1.69890 1.42299 0.98099 1.42273 0.86720 0.82244 0.77648 0.82276 1.20723 1.21479 1.19888 1.21688 0.94553 0.98067 0.90527 1.58722 1.04842 1.64890 1.08669 0.96432 0.91443 0.93874 0.92160 0.91715 0.86638 0.86100 0.84953 0.93061 0.91670 0.95835 0.84084 0.87943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.28 8.09 37.16 0.30 -1.98 16 2 C -0.06 -1.33 2.30 -89.22 -0.21 -1.54 16 3 H 0.08 1.70 7.69 -51.93 -0.40 1.30 16 4 C -0.08 -1.50 6.30 -26.84 -0.17 -1.67 16 5 C -0.12 -2.36 6.14 -104.19 -0.64 -3.00 16 6 C -0.09 -1.60 10.04 -39.55 -0.40 -2.00 16 7 C -0.18 -3.04 10.03 -39.56 -0.40 -3.43 16 8 C 0.08 1.46 7.30 -39.46 -0.29 1.17 16 9 F -0.15 -2.87 17.27 2.25 0.04 -2.83 16 10 C -0.12 -2.47 9.50 -39.47 -0.37 -2.84 16 11 C 0.00 0.02 4.73 -104.21 -0.49 -0.47 16 12 C 0.11 2.49 0.24 -155.78 -0.04 2.46 16 13 C -0.49 -11.69 5.30 -34.44 -0.18 -11.87 16 14 H 0.06 1.46 7.54 -52.49 -0.40 1.06 16 15 C 0.07 1.62 3.72 -17.82 -0.07 1.55 16 16 N -0.89 -21.81 10.25 55.43 0.57 -21.25 16 17 Si 0.88 19.77 29.54 -169.99 -5.02 14.75 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 21 C 0.08 1.78 5.35 -3.83 -0.02 1.76 16 22 N -0.84 -16.99 9.17 -10.37 -0.10 -17.08 16 23 H 0.02 0.32 8.07 -51.93 -0.42 -0.10 16 24 H 0.07 1.55 6.26 -51.93 -0.33 1.23 16 25 H 0.04 0.93 7.82 -51.93 -0.41 0.53 16 26 H 0.06 1.00 7.86 -51.93 -0.41 0.59 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.13 2.84 8.06 -52.49 -0.42 2.42 16 31 H 0.26 6.31 8.31 -40.82 -0.34 5.97 16 32 H 0.07 1.54 6.19 -51.93 -0.32 1.22 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.35 7.36 8.08 -39.29 -0.32 7.05 16 35 H 0.31 5.51 9.08 -39.29 -0.36 5.15 16 LS Contribution 283.91 15.07 4.28 4.28 Total: -1.00 -24.45 283.91 -7.80 -32.25 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -4.60 Total: 11.74 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -2.97 Total: -21.86 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.47 Total: -38.33 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -24.45 -7.80 -32.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260443353.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.050 kcal (2) G-P(sol) polarization free energy of solvation -24.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds