Wall clock time and date at job start Mon Mar 30 2020 06:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.88216 * 2 1 4 4 C 1.54350 * 110.82283 * 123.50633 * 2 1 3 5 5 C 1.51381 * 105.17027 * 91.86904 * 4 2 1 6 6 C 1.38512 * 130.36234 * 197.19146 * 5 4 2 7 7 C 1.38061 * 120.25318 * 179.97438 * 6 5 4 8 8 C 1.38470 * 119.90893 * 0.02562 * 7 6 5 9 9 F 1.35099 * 120.06357 * 180.02562 * 8 7 6 10 10 C 1.38330 * 119.87960 * 0.27686 * 8 7 6 11 11 C 1.38241 * 109.75110 * 17.19577 * 5 4 2 12 12 C 1.51379 * 109.75732 * 359.97438 * 11 5 4 13 13 C 1.50695 * 110.30361 * 223.88295 * 12 11 5 14 14 H 1.07997 * 120.00123 * 358.63210 * 13 12 11 15 15 C 1.37871 * 120.00188 * 178.62659 * 13 12 11 16 16 N 1.31518 * 119.99871 * 1.96285 * 15 13 12 17 17 Si 1.86800 * 120.00367 * 181.95749 * 15 13 12 18 18 H 1.48502 * 109.46873 * 90.00443 * 17 15 13 19 19 H 1.48495 * 109.47129 * 210.00108 * 17 15 13 20 20 H 1.48503 * 109.47128 * 330.00527 * 17 15 13 21 21 C 1.53006 * 110.29959 * 101.73194 * 12 11 5 22 22 N 1.46892 * 109.46978 * 68.12697 * 21 12 11 23 23 H 1.08998 * 109.47577 * 290.16547 * 1 2 3 24 24 H 1.08996 * 109.47605 * 50.16404 * 1 2 3 25 25 H 1.09004 * 109.47325 * 170.16926 * 1 2 3 26 26 H 1.08994 * 110.30388 * 332.95126 * 4 2 1 27 27 H 1.08997 * 110.30191 * 210.78915 * 4 2 1 28 28 H 1.07998 * 119.87152 * 0.02562 * 6 5 4 29 29 H 1.08002 * 120.04436 * 180.02562 * 7 6 5 30 30 H 1.07998 * 119.90009 * 179.72718 * 10 8 7 31 31 H 0.97006 * 120.00211 * 179.97438 * 16 15 13 32 32 H 1.09001 * 109.46748 * 188.12834 * 21 12 11 33 33 H 1.08996 * 109.47179 * 308.12402 * 21 12 11 34 34 H 1.00901 * 111.00502 * 66.51767 * 22 21 12 35 35 H 1.00903 * 110.99763 * 190.46798 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0786 -0.7964 1.2029 5 6 2.2640 -2.2091 0.6914 6 6 2.4203 -3.3997 1.3817 7 6 2.5755 -4.5870 0.6944 8 6 2.5756 -4.5882 -0.6903 9 9 2.7268 -5.7483 -1.3661 10 6 2.4258 -3.3988 -1.3805 11 6 2.2640 -2.2091 -0.6910 12 6 2.0780 -0.7967 -1.2027 13 6 1.0875 -0.7781 -2.3382 14 1 0.6442 -1.7005 -2.6833 15 6 0.7469 0.4164 -2.9365 16 7 1.3153 1.5349 -2.5422 17 14 -0.5218 0.4463 -4.3073 18 1 -1.8746 0.6377 -3.7256 19 1 -0.2199 1.5643 -5.2368 20 1 -0.4793 -0.8395 -5.0491 21 6 3.4187 -0.2158 -1.6568 22 7 3.8790 -0.9266 -2.8570 23 1 -0.3634 0.3543 0.9646 24 1 -0.3634 0.6583 -0.7891 25 1 -0.3634 -1.0126 -0.1755 26 1 1.3621 -0.7826 2.0242 27 1 3.0339 -0.3829 1.5263 28 1 2.4199 -3.3995 2.4617 29 1 2.6967 -5.5135 1.2360 30 1 2.4303 -3.3989 -2.4605 31 1 1.0760 2.3754 -2.9634 32 1 3.2970 0.8429 -1.8858 33 1 4.1539 -0.3331 -0.8607 34 1 3.2692 -0.7462 -3.6404 35 1 4.8330 -0.6832 -3.0779 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260443353.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:48 Heat of formation + Delta-G solvation = -40.831502 kcal Electronic energy + Delta-G solvation = -18945.837869 eV Core-core repulsion = 16049.896968 eV Total energy + Delta-G solvation = -2895.940901 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.73500 -41.18270 -37.58583 -34.77688 -33.80786 -31.92070 -30.76670 -28.93585 -27.19753 -26.10127 -23.87751 -22.64739 -21.45186 -20.60254 -18.27880 -17.41888 -17.09464 -16.47853 -16.42997 -16.25268 -16.06600 -15.48768 -14.94983 -14.75726 -14.36705 -14.11680 -13.72837 -13.36296 -13.27940 -12.94115 -12.78951 -12.66690 -12.63854 -12.27741 -12.01268 -11.83541 -11.47893 -11.12692 -11.00496 -10.62539 -10.32142 -9.57594 -9.25658 -8.96905 -7.94890 -6.02262 0.42757 0.61725 1.40083 1.46504 1.52298 2.48424 2.90801 3.28980 3.45172 3.81780 4.00357 4.21669 4.23906 4.41069 4.54048 4.64063 4.70132 4.91023 4.94784 5.01654 5.13918 5.19026 5.25447 5.34206 5.39205 5.46599 5.50276 5.60582 5.75391 5.85251 5.89266 6.07180 6.10173 6.23609 6.50642 6.73077 6.88077 7.09297 7.59257 9.03826 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.022703 B = 0.009316 C = 0.008244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.042101 B = 3004.834571 C = 3395.642146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.065 4.065 3 H 0.059 0.941 4 C -0.074 4.074 5 C -0.130 4.130 6 C -0.084 4.084 7 C -0.165 4.165 8 C 0.065 3.935 9 F -0.154 7.154 10 C -0.138 4.138 11 C -0.025 4.025 12 C 0.107 3.893 13 C -0.485 4.485 14 H 0.034 0.966 15 C 0.044 3.956 16 N -0.897 5.897 17 Si 0.921 3.079 18 H -0.284 1.284 19 H -0.289 1.289 20 H -0.280 1.280 21 C 0.091 3.909 22 N -0.841 5.841 23 H 0.043 0.957 24 H 0.040 0.960 25 H 0.030 0.970 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.157 0.843 29 H 0.156 0.844 30 H 0.111 0.889 31 H 0.256 0.744 32 H 0.043 0.957 33 H 0.028 0.972 34 H 0.338 0.662 35 H 0.325 0.675 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.575 -4.670 7.109 8.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.085 4.085 3 H 0.078 0.922 4 C -0.110 4.110 5 C -0.130 4.130 6 C -0.101 4.101 7 C -0.184 4.184 8 C 0.046 3.954 9 F -0.133 7.133 10 C -0.157 4.157 11 C -0.026 4.026 12 C 0.107 3.893 13 C -0.524 4.524 14 H 0.052 0.948 15 C -0.156 4.156 16 N -0.536 5.536 17 Si 0.750 3.250 18 H -0.210 1.210 19 H -0.215 1.215 20 H -0.206 1.206 21 C -0.040 4.040 22 N -0.369 5.369 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.174 0.826 29 H 0.174 0.826 30 H 0.129 0.871 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.150 0.850 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.449 -5.176 7.460 9.404 hybrid contribution -0.626 0.929 -1.943 2.242 sum 1.823 -4.247 5.518 7.197 Atomic orbital electron populations 1.21349 0.95609 0.99869 0.98873 1.21598 0.95478 0.97897 0.93512 0.92236 1.21206 1.01275 0.90128 0.98423 1.21082 1.01166 0.96308 0.94415 1.20678 0.98790 0.89726 1.00933 1.21099 1.05661 1.00459 0.91170 1.17795 1.05608 0.80878 0.91128 1.91409 1.93688 1.47225 1.80970 1.20547 1.03709 0.91104 1.00310 1.20825 0.92391 0.95531 0.93821 1.17871 0.92585 0.85877 0.93004 1.20871 1.23362 0.91975 1.16153 0.94762 1.25146 0.97088 0.95633 0.97725 1.69965 1.42828 0.98045 1.42734 0.86137 0.80967 0.77045 0.80892 1.21045 1.21484 1.20551 1.21536 0.94791 0.96727 0.90976 1.58687 1.05555 1.64600 1.08016 0.93850 0.94120 0.95070 0.89843 0.90263 0.82570 0.82615 0.87115 0.93405 0.93930 0.95342 0.84972 0.86394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.13 8.09 71.98 0.58 -3.55 16 2 C -0.07 -2.68 2.30 -9.89 -0.02 -2.71 16 3 H 0.06 2.63 7.69 -2.39 -0.02 2.61 16 4 C -0.07 -2.47 6.30 30.52 0.19 -2.27 16 5 C -0.13 -4.62 6.14 -19.58 -0.12 -4.74 16 6 C -0.08 -2.47 10.04 22.29 0.22 -2.24 16 7 C -0.17 -5.01 10.03 22.28 0.22 -4.78 16 8 C 0.06 2.38 7.30 22.35 0.16 2.54 16 9 F -0.15 -5.58 17.27 44.97 0.78 -4.81 16 10 C -0.14 -5.74 9.50 22.34 0.21 -5.52 16 11 C -0.03 -1.06 4.73 -19.60 -0.09 -1.15 16 12 C 0.11 4.74 0.24 -53.01 -0.01 4.73 16 13 C -0.48 -23.90 5.30 25.60 0.14 -23.76 16 14 H 0.03 1.81 7.54 -2.91 -0.02 1.79 16 15 C 0.04 2.15 3.72 84.65 0.31 2.47 16 16 N -0.90 -44.82 10.25 21.45 0.22 -44.60 16 17 Si 0.92 41.29 29.54 68.60 2.03 43.32 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 21 C 0.09 3.95 5.35 86.31 0.46 4.41 16 22 N -0.84 -34.27 9.17 -186.73 -1.71 -35.98 16 23 H 0.04 1.52 8.07 -2.39 -0.02 1.50 16 24 H 0.04 1.87 6.26 -2.39 -0.01 1.86 16 25 H 0.03 1.32 7.82 -2.38 -0.02 1.30 16 26 H 0.08 2.42 7.86 -2.39 -0.02 2.40 16 27 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 29 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 30 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 31 H 0.26 12.65 8.31 -92.70 -0.77 11.88 16 32 H 0.04 2.04 6.19 -2.39 -0.01 2.03 16 33 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.34 14.75 8.08 -89.69 -0.72 14.03 16 35 H 0.33 11.50 9.08 -89.69 -0.81 10.68 16 Total: -1.00 -52.55 283.91 3.15 -49.41 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: -0.42 Total: 29.24 kcal Atomic # 6 Polarization: -38.84 SS G_CDS: 2.26 Total: -36.58 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -1.49 Total: -80.58 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.78 Total: -4.81 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -52.55 3.15 -49.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260443353.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.574 kcal (2) G-P(sol) polarization free energy of solvation -52.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds