Wall clock time and date at job start Mon Mar 30 2020 06:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.72897 * 2 1 4 4 C 1.54346 * 110.82135 * 123.39803 * 2 1 3 5 5 C 1.51381 * 105.17086 * 91.86697 * 4 2 1 6 6 C 1.38517 * 130.35741 * 197.20341 * 5 4 2 7 7 C 1.38063 * 120.25103 * 179.97438 * 6 5 4 8 8 C 1.38483 * 119.90345 * 0.02562 * 7 6 5 9 9 F 1.35104 * 120.05406 * 180.02562 * 8 7 6 10 10 C 1.38319 * 119.88355 * 359.97438 * 8 7 6 11 11 C 1.38238 * 109.74903 * 17.19842 * 5 4 2 12 12 C 1.51365 * 109.75733 * 359.97438 * 11 5 4 13 13 C 1.50704 * 110.30230 * 101.73410 * 12 11 5 14 14 H 1.08002 * 120.00021 * 243.28523 * 13 12 11 15 15 C 1.37875 * 119.99903 * 63.28781 * 13 12 11 16 16 N 1.31522 * 120.00172 * 9.04918 * 15 13 12 17 17 Si 1.86804 * 120.00041 * 189.05241 * 15 13 12 18 18 H 1.48498 * 109.47095 * 89.99944 * 17 15 13 19 19 H 1.48504 * 109.47052 * 209.99729 * 17 15 13 20 20 H 1.48499 * 109.46922 * 329.99527 * 17 15 13 21 21 C 1.53000 * 110.30740 * 223.88548 * 12 11 5 22 22 N 1.46896 * 109.47720 * 181.40048 * 21 12 11 23 23 H 1.09007 * 109.47051 * 291.94389 * 1 2 3 24 24 H 1.08996 * 109.47441 * 51.93759 * 1 2 3 25 25 H 1.08996 * 109.47048 * 171.94568 * 1 2 3 26 26 H 1.08996 * 110.30292 * 210.79167 * 4 2 1 27 27 H 1.09003 * 110.30413 * 332.94394 * 4 2 1 28 28 H 1.07999 * 119.87076 * 0.02562 * 6 5 4 29 29 H 1.07994 * 120.04703 * 179.97438 * 7 6 5 30 30 H 1.07998 * 119.90461 * 180.02562 * 10 8 7 31 31 H 0.96994 * 120.00195 * 180.02562 * 16 15 13 32 32 H 1.08999 * 109.46779 * 301.40132 * 21 12 11 33 33 H 1.09001 * 109.46777 * 61.39120 * 21 12 11 34 34 H 1.00899 * 111.00276 * 184.34212 * 22 21 12 35 35 H 1.00906 * 110.99484 * 308.29445 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0786 -0.7941 1.2044 5 6 2.2639 -2.2078 0.6956 6 6 2.4200 -3.3971 1.3883 7 6 2.5752 -4.5857 0.7033 8 6 2.5756 -4.5895 -0.6816 9 9 2.7267 -5.7510 -1.3550 10 6 2.4198 -3.4023 -1.3740 11 6 2.2640 -2.2104 -0.6867 12 6 2.0782 -0.7990 -1.2011 13 6 3.3987 -0.2277 -1.6494 14 1 3.8129 0.6338 -1.1469 15 6 4.0781 -0.8050 -2.7012 16 7 3.4984 -1.7366 -3.4264 17 14 5.8219 -0.2639 -3.0962 18 1 6.7842 -1.1034 -2.3383 19 1 6.0702 -0.4181 -4.5522 20 1 5.9973 1.1598 -2.7122 21 6 1.0724 -0.7822 -2.3540 22 7 0.9312 0.5893 -2.8608 23 1 -0.3633 0.3841 0.9533 24 1 -0.3634 0.6335 -0.8091 25 1 -0.3633 -1.0175 -0.1440 26 1 3.0339 -0.3800 1.5270 27 1 1.3621 -0.7786 2.0257 28 1 2.4194 -3.3947 2.4683 29 1 2.6970 -5.5111 1.2466 30 1 2.4196 -3.4050 -2.4540 31 1 3.9765 -2.1429 -4.1661 32 1 1.4271 -1.4308 -3.1550 33 1 0.1061 -1.1395 -1.9983 34 1 0.2206 0.6395 -3.5753 35 1 0.7349 1.2339 -2.1096 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260443359.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:52 Heat of formation + Delta-G solvation = -18.901128 kcal Electronic energy + Delta-G solvation = -19049.757564 eV Core-core repulsion = 16154.767636 eV Total energy + Delta-G solvation = -2894.989929 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.09290 -39.67220 -36.09568 -33.14260 -32.09377 -30.17828 -29.33829 -27.39778 -25.81476 -24.05938 -22.32583 -21.39434 -20.21019 -18.25861 -16.81853 -15.84525 -15.55240 -14.94292 -14.81177 -14.48388 -14.42992 -13.80957 -13.65480 -13.16181 -12.76005 -12.49792 -11.99526 -11.94816 -11.66583 -11.46046 -11.27878 -10.89031 -10.67959 -10.63795 -10.36694 -10.29421 -10.04710 -9.75178 -9.22247 -9.08676 -8.39574 -7.86461 -7.49168 -7.32692 -5.96714 -4.01523 2.05983 2.22504 3.33956 3.40893 3.42938 4.43627 4.55965 5.04611 5.22174 5.29504 5.51513 5.65544 5.74783 5.81513 5.83050 5.93134 6.15827 6.28346 6.29630 6.42717 6.48592 6.58716 6.68461 6.75242 6.88242 6.91698 7.01419 7.09323 7.22592 7.32870 7.61774 7.82438 7.91133 8.05142 8.20791 8.52431 8.59445 8.91467 9.60322 11.03562 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.016258 B = 0.012282 C = 0.009061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.838475 B = 2279.250961 C = 3089.424036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 H 0.076 0.924 4 C -0.063 4.063 5 C -0.127 4.127 6 C -0.098 4.098 7 C -0.183 4.183 8 C 0.071 3.929 9 F -0.155 7.155 10 C -0.121 4.121 11 C 0.002 3.998 12 C 0.114 3.886 13 C -0.475 4.475 14 H 0.058 0.942 15 C 0.076 3.924 16 N -0.878 5.878 17 Si 0.891 3.109 18 H -0.284 1.284 19 H -0.288 1.288 20 H -0.275 1.275 21 C 0.072 3.928 22 N -0.823 5.823 23 H 0.042 0.958 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.156 0.844 31 H 0.259 0.741 32 H 0.107 0.893 33 H -0.017 1.017 34 H 0.314 0.686 35 H 0.320 0.680 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.937 -0.330 6.235 7.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.095 0.905 4 C -0.100 4.100 5 C -0.127 4.127 6 C -0.116 4.116 7 C -0.202 4.202 8 C 0.052 3.948 9 F -0.134 7.134 10 C -0.140 4.140 11 C 0.001 3.999 12 C 0.113 3.887 13 C -0.512 4.512 14 H 0.077 0.923 15 C -0.126 4.126 16 N -0.516 5.516 17 Si 0.720 3.280 18 H -0.211 1.211 19 H -0.214 1.214 20 H -0.200 1.200 21 C -0.058 4.058 22 N -0.351 5.351 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.131 0.869 29 H 0.136 0.864 30 H 0.173 0.827 31 H 0.070 0.930 32 H 0.125 0.875 33 H 0.001 0.999 34 H 0.124 0.876 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.120 -0.560 5.804 7.139 hybrid contribution 0.231 -0.237 0.039 0.333 sum -3.889 -0.797 5.843 7.064 Atomic orbital electron populations 1.21898 0.96658 1.01213 0.99958 1.21965 0.93599 0.99540 0.95825 0.90528 1.20953 1.00337 0.91313 0.97438 1.20697 1.02216 0.94549 0.95283 1.20173 1.01705 0.91077 0.98657 1.20664 1.08463 0.98659 0.92372 1.17770 1.05253 0.81724 0.90006 1.91402 1.93681 1.47377 1.80895 1.21247 1.00441 0.89509 1.02819 1.20913 0.91084 0.95548 0.92372 1.17820 0.95157 0.86030 0.89683 1.20691 1.02694 1.12973 1.14844 0.92346 1.24773 0.97666 0.95005 0.95200 1.69666 1.36042 1.27293 1.18603 0.86602 0.85206 0.78891 0.77304 1.21079 1.21398 1.20013 1.22086 0.93604 0.89637 1.00483 1.58606 1.52652 1.08154 1.15704 0.93933 0.93179 0.92976 0.90928 0.92500 0.86922 0.86412 0.82663 0.93041 0.87495 0.99937 0.87616 0.86710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 7.76 37.16 0.29 -1.97 16 2 C -0.09 -1.70 2.39 -89.22 -0.21 -1.91 16 3 H 0.08 1.44 7.75 -51.93 -0.40 1.04 16 4 C -0.06 -1.13 6.30 -26.84 -0.17 -1.30 16 5 C -0.13 -2.55 6.14 -104.18 -0.64 -3.19 16 6 C -0.10 -1.78 10.04 -39.54 -0.40 -2.17 16 7 C -0.18 -3.41 10.03 -39.56 -0.40 -3.80 16 8 C 0.07 1.51 7.30 -39.46 -0.29 1.22 16 9 F -0.15 -3.21 17.27 2.25 0.04 -3.17 16 10 C -0.12 -2.79 8.82 -39.47 -0.35 -3.14 16 11 C 0.00 0.05 4.62 -104.21 -0.48 -0.43 16 12 C 0.11 2.53 0.25 -155.79 -0.04 2.49 16 13 C -0.47 -11.99 7.52 -34.44 -0.26 -12.25 16 14 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 15 C 0.08 1.96 5.17 -17.82 -0.09 1.87 16 16 N -0.88 -22.98 8.20 55.43 0.45 -22.53 16 17 Si 0.89 21.11 29.55 -169.99 -5.02 16.09 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 21 C 0.07 1.58 4.72 -3.83 -0.02 1.56 16 22 N -0.82 -16.42 9.02 -10.37 -0.09 -16.51 16 23 H 0.04 0.59 8.10 -51.92 -0.42 0.17 16 24 H 0.05 0.77 5.85 -51.93 -0.30 0.47 16 25 H 0.05 0.89 7.21 -51.93 -0.37 0.52 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 27 H 0.06 0.87 7.88 -51.93 -0.41 0.46 16 28 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 29 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 30 H 0.16 3.84 5.97 -52.49 -0.31 3.53 16 31 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.11 2.67 5.53 -51.93 -0.29 2.38 16 33 H -0.02 -0.36 6.13 -51.93 -0.32 -0.68 16 34 H 0.31 5.52 9.08 -39.29 -0.36 5.17 16 35 H 0.32 5.86 6.39 -39.29 -0.25 5.61 16 LS Contribution 276.50 15.07 4.17 4.17 Total: -1.00 -26.54 276.50 -7.75 -34.29 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -4.24 Total: 10.71 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -3.05 Total: -23.03 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.36 Total: -39.04 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.04 Total: -3.17 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -26.54 -7.75 -34.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260443359.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.388 kcal (2) G-P(sol) polarization free energy of solvation -26.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds