Wall clock time and date at job start Mon Mar 30 2020 06:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 110.72897 * 2 1 4 4 C 1.54346 * 110.82135 * 123.39803 * 2 1 3 5 5 C 1.51381 * 105.17086 * 91.86697 * 4 2 1 6 6 C 1.38517 * 130.35741 * 197.20341 * 5 4 2 7 7 C 1.38063 * 120.25103 * 179.97438 * 6 5 4 8 8 C 1.38483 * 119.90345 * 0.02562 * 7 6 5 9 9 F 1.35104 * 120.05406 * 180.02562 * 8 7 6 10 10 C 1.38319 * 119.88355 * 359.97438 * 8 7 6 11 11 C 1.38238 * 109.74903 * 17.19842 * 5 4 2 12 12 C 1.51365 * 109.75733 * 359.97438 * 11 5 4 13 13 C 1.50704 * 110.30230 * 101.73410 * 12 11 5 14 14 H 1.08002 * 120.00021 * 243.28523 * 13 12 11 15 15 C 1.37875 * 119.99903 * 63.28781 * 13 12 11 16 16 N 1.31522 * 120.00172 * 9.04918 * 15 13 12 17 17 Si 1.86804 * 120.00041 * 189.05241 * 15 13 12 18 18 H 1.48498 * 109.47095 * 89.99944 * 17 15 13 19 19 H 1.48504 * 109.47052 * 209.99729 * 17 15 13 20 20 H 1.48499 * 109.46922 * 329.99527 * 17 15 13 21 21 C 1.53000 * 110.30740 * 223.88548 * 12 11 5 22 22 N 1.46896 * 109.47720 * 181.40048 * 21 12 11 23 23 H 1.09007 * 109.47051 * 291.94389 * 1 2 3 24 24 H 1.08996 * 109.47441 * 51.93759 * 1 2 3 25 25 H 1.08996 * 109.47048 * 171.94568 * 1 2 3 26 26 H 1.08996 * 110.30292 * 210.79167 * 4 2 1 27 27 H 1.09003 * 110.30413 * 332.94394 * 4 2 1 28 28 H 1.07999 * 119.87076 * 0.02562 * 6 5 4 29 29 H 1.07994 * 120.04703 * 179.97438 * 7 6 5 30 30 H 1.07998 * 119.90461 * 180.02562 * 10 8 7 31 31 H 0.96994 * 120.00195 * 180.02562 * 16 15 13 32 32 H 1.08999 * 109.46779 * 301.40132 * 21 12 11 33 33 H 1.09001 * 109.46777 * 61.39120 * 21 12 11 34 34 H 1.00899 * 111.00276 * 184.34212 * 22 21 12 35 35 H 1.00906 * 110.99484 * 308.29445 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0195 0.0000 4 6 2.0786 -0.7941 1.2044 5 6 2.2639 -2.2078 0.6956 6 6 2.4200 -3.3971 1.3883 7 6 2.5752 -4.5857 0.7033 8 6 2.5756 -4.5895 -0.6816 9 9 2.7267 -5.7510 -1.3550 10 6 2.4198 -3.4023 -1.3740 11 6 2.2640 -2.2104 -0.6867 12 6 2.0782 -0.7990 -1.2011 13 6 3.3987 -0.2277 -1.6494 14 1 3.8129 0.6338 -1.1469 15 6 4.0781 -0.8050 -2.7012 16 7 3.4984 -1.7366 -3.4264 17 14 5.8219 -0.2639 -3.0962 18 1 6.7842 -1.1034 -2.3383 19 1 6.0702 -0.4181 -4.5522 20 1 5.9973 1.1598 -2.7122 21 6 1.0724 -0.7822 -2.3540 22 7 0.9312 0.5893 -2.8608 23 1 -0.3633 0.3841 0.9533 24 1 -0.3634 0.6335 -0.8091 25 1 -0.3633 -1.0175 -0.1440 26 1 3.0339 -0.3800 1.5270 27 1 1.3621 -0.7786 2.0257 28 1 2.4194 -3.3947 2.4683 29 1 2.6970 -5.5111 1.2466 30 1 2.4196 -3.4050 -2.4540 31 1 3.9765 -2.1429 -4.1661 32 1 1.4271 -1.4308 -3.1550 33 1 0.1061 -1.1395 -1.9983 34 1 0.2206 0.6395 -3.5753 35 1 0.7349 1.2339 -2.1096 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260443359.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:51 Heat of formation + Delta-G solvation = -33.625629 kcal Electronic energy + Delta-G solvation = -19050.396066 eV Core-core repulsion = 16154.767636 eV Total energy + Delta-G solvation = -2895.628431 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.71657 -41.22676 -37.65744 -34.83034 -33.84970 -31.78483 -30.80151 -29.10925 -27.28732 -25.83545 -23.95159 -22.93571 -21.75869 -19.86827 -18.56483 -17.49475 -17.18673 -16.68683 -16.43401 -16.13517 -16.02471 -15.41568 -15.23448 -14.70264 -14.25795 -14.05284 -13.77723 -13.42447 -13.19512 -13.09869 -12.86865 -12.67279 -12.41189 -12.29300 -12.01223 -11.89323 -11.57347 -11.35908 -10.92083 -10.71000 -10.34948 -9.48210 -9.05912 -8.96086 -7.89549 -5.99324 0.47505 0.68057 1.41650 1.45564 1.50917 2.50384 2.96091 3.31749 3.52185 3.80469 4.01149 4.22314 4.30197 4.37780 4.41081 4.52813 4.72032 4.79793 4.90920 4.96615 5.01685 5.15123 5.20307 5.25993 5.36855 5.39331 5.47924 5.56567 5.65600 5.74856 5.78081 6.14246 6.22075 6.32618 6.41113 6.83678 6.99146 7.12317 7.63015 9.05475 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.016258 B = 0.012282 C = 0.009061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.838475 B = 2279.250961 C = 3089.424036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.089 4.089 3 H 0.073 0.927 4 C -0.059 4.059 5 C -0.131 4.131 6 C -0.089 4.089 7 C -0.172 4.172 8 C 0.052 3.948 9 F -0.159 7.159 10 C -0.147 4.147 11 C -0.026 4.026 12 C 0.104 3.896 13 C -0.479 4.479 14 H 0.048 0.952 15 C 0.036 3.964 16 N -0.889 5.889 17 Si 0.931 3.069 18 H -0.290 1.290 19 H -0.293 1.293 20 H -0.271 1.271 21 C 0.083 3.917 22 N -0.832 5.832 23 H 0.072 0.928 24 H 0.053 0.947 25 H 0.039 0.961 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.157 0.843 29 H 0.152 0.848 30 H 0.126 0.874 31 H 0.251 0.749 32 H 0.071 0.929 33 H -0.009 1.009 34 H 0.326 0.674 35 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.584 0.041 8.954 10.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.107 4.107 3 H 0.092 0.908 4 C -0.096 4.096 5 C -0.132 4.132 6 C -0.107 4.107 7 C -0.190 4.190 8 C 0.033 3.967 9 F -0.138 7.138 10 C -0.166 4.166 11 C -0.027 4.027 12 C 0.104 3.896 13 C -0.517 4.517 14 H 0.067 0.933 15 C -0.164 4.164 16 N -0.528 5.528 17 Si 0.759 3.241 18 H -0.216 1.216 19 H -0.220 1.220 20 H -0.196 1.196 21 C -0.048 4.048 22 N -0.362 5.362 23 H 0.091 0.909 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.092 0.908 27 H 0.110 0.890 28 H 0.174 0.826 29 H 0.170 0.830 30 H 0.143 0.857 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.009 0.991 34 H 0.138 0.862 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.775 -0.175 8.524 9.772 hybrid contribution 0.412 -0.368 -0.799 0.971 sum -4.362 -0.543 7.726 8.889 Atomic orbital electron populations 1.21822 0.94606 1.00730 1.01832 1.21919 0.95290 0.98855 0.94657 0.90825 1.20989 1.01290 0.89510 0.97834 1.21084 1.01376 0.96404 0.94302 1.20641 0.99449 0.89846 1.00766 1.21063 1.06384 1.00516 0.91084 1.17985 1.06331 0.81070 0.91298 1.91382 1.93817 1.47334 1.81251 1.21134 1.02638 0.91111 1.01722 1.21007 0.92551 0.95231 0.93921 1.17880 0.93857 0.86742 0.91135 1.20926 1.04023 1.12452 1.14312 0.93329 1.25293 0.99676 0.95589 0.95843 1.69846 1.36251 1.28006 1.18704 0.85990 0.82972 0.78537 0.76573 1.21649 1.21953 1.19611 1.21807 0.93799 0.89856 0.99333 1.58497 1.53618 1.07553 1.16561 0.90891 0.92858 0.94206 0.90822 0.89039 0.82577 0.83041 0.85651 0.93946 0.91124 0.99147 0.86239 0.85433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 7.76 71.98 0.56 -3.35 16 2 C -0.09 -3.13 2.39 -9.89 -0.02 -3.16 16 3 H 0.07 2.63 7.75 -2.38 -0.02 2.61 16 4 C -0.06 -1.92 6.30 30.52 0.19 -1.72 16 5 C -0.13 -4.92 6.14 -19.58 -0.12 -5.04 16 6 C -0.09 -2.88 10.04 22.29 0.22 -2.66 16 7 C -0.17 -5.90 10.03 22.29 0.22 -5.68 16 8 C 0.05 2.19 7.30 22.35 0.16 2.35 16 9 F -0.16 -6.64 17.27 44.97 0.78 -5.86 16 10 C -0.15 -6.93 8.82 22.34 0.20 -6.73 16 11 C -0.03 -1.15 4.62 -19.60 -0.09 -1.25 16 12 C 0.10 4.61 0.25 -53.01 -0.01 4.60 16 13 C -0.48 -24.37 7.52 25.60 0.19 -24.18 16 14 H 0.05 2.50 7.60 -2.91 -0.02 2.48 16 15 C 0.04 1.90 5.17 84.65 0.44 2.34 16 16 N -0.89 -48.43 8.20 21.45 0.18 -48.25 16 17 Si 0.93 44.01 29.55 68.60 2.03 46.03 16 18 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 19 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 20 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 21 C 0.08 3.66 4.72 86.30 0.41 4.07 16 22 N -0.83 -32.99 9.02 -186.73 -1.68 -34.68 16 23 H 0.07 1.71 8.10 -2.38 -0.02 1.69 16 24 H 0.05 1.51 5.85 -2.39 -0.01 1.50 16 25 H 0.04 1.27 7.21 -2.39 -0.02 1.25 16 26 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 27 H 0.09 2.33 7.88 -2.39 -0.02 2.31 16 28 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 29 H 0.15 4.14 8.06 -2.91 -0.02 4.11 16 30 H 0.13 6.59 5.97 -2.91 -0.02 6.58 16 31 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 32 H 0.07 3.68 5.53 -2.39 -0.01 3.66 16 33 H -0.01 -0.39 6.13 -2.39 -0.01 -0.40 16 34 H 0.33 11.38 9.08 -89.69 -0.81 10.57 16 35 H 0.33 11.77 6.39 -89.69 -0.57 11.19 16 Total: -1.00 -58.34 276.50 3.39 -54.95 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: -0.26 Total: 28.21 kcal Atomic # 6 Polarization: -42.76 SS G_CDS: 2.35 Total: -40.41 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -1.51 Total: -82.93 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 0.78 Total: -5.86 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -58.34 3.39 -54.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260443359.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.327 kcal (2) G-P(sol) polarization free energy of solvation -58.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds