Wall clock time and date at job start Mon Mar 30 2020 07:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99311 * 2 1 4 4 C 1.39663 * 110.99853 * 123.94697 * 2 1 3 5 5 C 1.38901 * 120.06506 * 294.88321 * 4 2 1 6 6 C 1.38293 * 119.89999 * 180.25323 * 5 4 2 7 7 F 1.35106 * 119.99019 * 179.76838 * 6 5 4 8 8 C 1.38541 * 120.02698 * 359.74864 * 6 5 4 9 9 C 1.38227 * 120.12126 * 359.97438 * 8 6 5 10 10 C 1.38135 * 120.10074 * 0.02635 * 9 8 6 11 11 C 1.50700 * 120.01070 * 179.97438 * 10 9 8 12 12 C 1.50697 * 115.54857 * 244.92676 * 11 10 9 13 13 H 1.07999 * 119.99821 * 213.57210 * 12 11 10 14 14 C 1.37876 * 119.99787 * 33.58192 * 12 11 10 15 15 N 1.31515 * 120.00358 * 8.34176 * 14 12 11 16 16 Si 1.86800 * 119.99796 * 188.62373 * 14 12 11 17 17 H 1.48497 * 109.47631 * 64.94061 * 16 14 12 18 18 H 1.48501 * 109.47292 * 184.94691 * 16 14 12 19 19 H 1.48505 * 109.47230 * 304.94016 * 16 14 12 20 20 C 1.52994 * 117.49997 * 30.60330 * 11 10 9 21 21 C 1.52999 * 117.49691 * 99.26333 * 11 10 9 22 22 H 1.09002 * 109.47652 * 302.57638 * 1 2 3 23 23 H 1.09001 * 109.47176 * 62.58346 * 1 2 3 24 24 H 1.09004 * 109.46559 * 182.58013 * 1 2 3 25 25 H 1.09005 * 109.46398 * 183.97862 * 3 2 1 26 26 H 1.09000 * 109.46989 * 303.96893 * 3 2 1 27 27 H 1.08992 * 109.47861 * 63.97550 * 3 2 1 28 28 H 1.08002 * 120.04547 * 359.97438 * 5 4 2 29 29 H 1.08006 * 119.94107 * 180.02562 * 8 6 5 30 30 H 1.08009 * 119.94786 * 179.97438 * 9 8 6 31 31 H 0.96994 * 120.00052 * 184.96929 * 15 14 12 32 32 H 1.09003 * 117.50238 * 214.99832 * 20 11 10 33 33 H 1.09002 * 117.50244 * 0.02562 * 20 11 10 34 34 H 1.09008 * 117.49845 * 359.97438 * 21 11 10 35 35 H 1.08996 * 117.50136 * 144.99219 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9695 -0.7281 1.0816 5 6 1.7466 -0.2875 2.3799 6 6 2.2482 -1.0083 3.4482 7 9 2.0366 -0.5788 4.7116 8 6 2.9674 -2.1709 3.2235 9 6 3.1849 -2.6134 1.9322 10 6 2.6862 -1.8974 0.8613 11 6 2.9250 -2.3814 -0.5457 12 6 3.7774 -1.4843 -1.4057 13 1 3.5853 -1.4111 -2.4660 14 6 4.8026 -0.7572 -0.8390 15 7 5.1435 -0.9671 0.4137 16 14 5.7023 0.5319 -1.8482 17 1 4.7639 1.6268 -2.2027 18 1 6.8298 1.0836 -1.0547 19 1 6.2287 -0.0902 -3.0897 20 6 3.0461 -3.8911 -0.7625 21 6 1.7922 -3.1484 -1.2308 22 1 -0.3634 0.5533 0.8660 23 1 -0.3633 0.4732 -0.9122 24 1 -0.3632 -1.0267 0.0463 25 1 3.0827 1.3433 -0.0713 26 1 1.5894 1.9164 -0.8523 27 1 1.7046 1.8723 0.9234 28 1 1.1863 0.6192 2.5545 29 1 3.3582 -2.7330 4.0589 30 1 3.7463 -3.5199 1.7602 31 1 5.8148 -0.4072 0.8341 32 1 3.7423 -4.2355 -1.5272 33 1 2.9526 -4.5343 0.1124 34 1 0.8743 -3.3033 -0.6635 35 1 1.6634 -3.0042 -2.3034 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260464035.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:54 Heat of formation + Delta-G solvation = 21.421929 kcal Electronic energy + Delta-G solvation = -19020.243139 eV Core-core repulsion = 16127.001749 eV Total energy + Delta-G solvation = -2893.241390 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.17808 -39.22969 -36.23226 -35.21313 -32.06257 -29.44136 -28.91701 -26.98055 -25.53460 -23.98205 -22.25858 -21.26577 -20.22678 -19.18194 -17.02366 -16.49746 -15.65180 -14.93633 -14.65480 -14.54085 -14.33307 -14.19179 -13.70546 -13.47913 -12.96933 -12.47260 -12.26099 -11.89132 -11.54290 -11.39252 -11.24744 -11.13953 -10.82836 -10.70848 -10.48096 -10.27299 -10.25646 -9.47574 -9.14955 -8.79714 -8.19044 -8.04015 -7.68161 -7.36615 -5.93957 -3.97072 2.08579 2.19198 3.30298 3.36961 3.39548 4.42052 4.50089 4.62674 5.03202 5.10383 5.50684 5.61758 5.68750 5.77498 5.81820 5.86968 5.98961 6.06589 6.22956 6.26167 6.35579 6.53189 6.59282 6.65598 6.69590 6.72301 6.90422 6.97500 7.10981 7.31952 7.39719 7.53405 7.65182 7.77134 7.90650 8.29843 8.44000 8.94947 9.58379 11.05614 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.018206 B = 0.010550 C = 0.010183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.623254 B = 2653.396817 C = 2749.034704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.473 5.473 3 C 0.039 3.961 4 C 0.120 3.880 5 C -0.193 4.193 6 C 0.066 3.934 7 F -0.159 7.159 8 C -0.160 4.160 9 C -0.061 4.061 10 C 0.062 3.938 11 C 0.101 3.899 12 C -0.456 4.456 13 H 0.060 0.940 14 C 0.074 3.926 15 N -0.873 5.873 16 Si 0.879 3.121 17 H -0.276 1.276 18 H -0.290 1.290 19 H -0.278 1.278 20 C -0.215 4.215 21 C -0.192 4.192 22 H 0.016 0.984 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.061 0.939 27 H 0.014 0.986 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.260 0.740 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.329 0.459 2.229 6.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.193 5.193 3 C -0.109 4.109 4 C 0.026 3.974 5 C -0.214 4.214 6 C 0.047 3.953 7 F -0.138 7.138 8 C -0.179 4.179 9 C -0.080 4.080 10 C 0.060 3.940 11 C 0.100 3.900 12 C -0.494 4.494 13 H 0.078 0.922 14 C -0.129 4.129 15 N -0.510 5.510 16 Si 0.707 3.293 17 H -0.201 1.201 18 H -0.215 1.215 19 H -0.203 1.203 20 C -0.253 4.253 21 C -0.230 4.230 22 H 0.035 0.965 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.033 0.967 28 H 0.131 0.869 29 H 0.136 0.864 30 H 0.141 0.859 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.997 0.301 1.944 6.311 hybrid contribution 0.360 1.370 0.564 1.525 sum -5.637 1.671 2.508 6.392 Atomic orbital electron populations 1.22409 0.87801 1.01595 0.99782 1.59421 1.05959 1.13229 1.40674 1.22338 1.02112 0.87692 0.98716 1.18167 0.98104 0.94445 0.86688 1.21345 1.05419 1.01432 0.93210 1.17321 1.03538 0.96442 0.78047 1.91389 1.93896 1.89984 1.38554 1.20887 1.02176 0.96546 0.98241 1.20617 0.96948 0.99930 0.90478 1.19102 0.89306 0.90935 0.94658 1.17504 0.94732 0.88496 0.89261 1.20248 1.11522 1.24169 0.93430 0.92220 1.24843 0.96198 0.96751 0.95094 1.69963 1.31532 1.37697 1.11817 0.86874 0.79331 0.82649 0.80438 1.20132 1.21544 1.20310 1.23167 1.00599 0.99550 1.01995 1.22794 0.91966 1.08642 0.99567 0.96526 0.91600 0.91694 0.90542 0.92021 0.96739 0.86858 0.86418 0.85927 0.92997 0.90266 0.91637 0.91753 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.32 60.07 0.56 1.07 16 2 N -0.47 -9.43 3.94 -186.86 -0.74 -10.16 16 3 C 0.04 0.73 9.33 60.07 0.56 1.29 16 4 C 0.12 2.56 4.63 -83.80 -0.39 2.17 16 5 C -0.19 -3.88 8.63 -39.32 -0.34 -4.22 16 6 C 0.07 1.33 7.30 -39.45 -0.29 1.04 16 7 F -0.16 -3.07 17.27 2.25 0.04 -3.04 16 8 C -0.16 -3.15 10.02 -39.47 -0.40 -3.55 16 9 C -0.06 -1.30 8.59 -39.62 -0.34 -1.64 16 10 C 0.06 1.39 3.20 -104.41 -0.33 1.05 16 11 C 0.10 2.34 1.59 -156.82 -0.25 2.09 16 12 C -0.46 -11.68 8.51 -34.44 -0.29 -11.97 16 13 H 0.06 1.56 7.83 -52.49 -0.41 1.15 16 14 C 0.07 1.90 4.94 -17.82 -0.09 1.81 16 15 N -0.87 -23.15 11.13 55.43 0.62 -22.53 16 16 Si 0.88 20.40 29.39 -169.99 -5.00 15.40 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 C -0.22 -4.60 9.43 -26.70 -0.25 -4.85 16 21 C -0.19 -3.99 9.94 -26.69 -0.27 -4.26 16 22 H 0.02 0.25 7.63 -51.93 -0.40 -0.15 16 23 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 25 H 0.08 1.66 7.64 -51.93 -0.40 1.26 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.01 0.25 7.06 -51.93 -0.37 -0.12 16 28 H 0.11 2.10 7.07 -52.49 -0.37 1.72 16 29 H 0.12 2.02 8.06 -52.48 -0.42 1.60 16 30 H 0.12 2.54 6.98 -52.48 -0.37 2.17 16 31 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 32 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 33 H 0.07 1.30 7.10 -51.93 -0.37 0.93 16 34 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 35 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 LS Contribution 294.97 15.07 4.45 4.45 Total: -1.00 -26.60 294.97 -7.51 -34.11 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -4.77 Total: 1.73 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -2.11 Total: -19.97 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: -0.12 Total: -32.69 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.04 Total: -3.04 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.00 Total: 15.40 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.60 -7.51 -34.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260464035.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.536 kcal (2) G-P(sol) polarization free energy of solvation -26.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds