Wall clock time and date at job start Mon Mar 30 2020 07:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99311 * 2 1 4 4 C 1.39663 * 110.99853 * 123.94697 * 2 1 3 5 5 C 1.38901 * 120.06506 * 294.88321 * 4 2 1 6 6 C 1.38293 * 119.89999 * 180.25323 * 5 4 2 7 7 F 1.35106 * 119.99019 * 179.76838 * 6 5 4 8 8 C 1.38541 * 120.02698 * 359.74864 * 6 5 4 9 9 C 1.38227 * 120.12126 * 359.97438 * 8 6 5 10 10 C 1.38135 * 120.10074 * 0.02635 * 9 8 6 11 11 C 1.50700 * 120.01070 * 179.97438 * 10 9 8 12 12 C 1.50697 * 115.54857 * 244.92676 * 11 10 9 13 13 H 1.07999 * 119.99821 * 213.57210 * 12 11 10 14 14 C 1.37876 * 119.99787 * 33.58192 * 12 11 10 15 15 N 1.31515 * 120.00358 * 8.34176 * 14 12 11 16 16 Si 1.86800 * 119.99796 * 188.62373 * 14 12 11 17 17 H 1.48497 * 109.47631 * 64.94061 * 16 14 12 18 18 H 1.48501 * 109.47292 * 184.94691 * 16 14 12 19 19 H 1.48505 * 109.47230 * 304.94016 * 16 14 12 20 20 C 1.52994 * 117.49997 * 30.60330 * 11 10 9 21 21 C 1.52999 * 117.49691 * 99.26333 * 11 10 9 22 22 H 1.09002 * 109.47652 * 302.57638 * 1 2 3 23 23 H 1.09001 * 109.47176 * 62.58346 * 1 2 3 24 24 H 1.09004 * 109.46559 * 182.58013 * 1 2 3 25 25 H 1.09005 * 109.46398 * 183.97862 * 3 2 1 26 26 H 1.09000 * 109.46989 * 303.96893 * 3 2 1 27 27 H 1.08992 * 109.47861 * 63.97550 * 3 2 1 28 28 H 1.08002 * 120.04547 * 359.97438 * 5 4 2 29 29 H 1.08006 * 119.94107 * 180.02562 * 8 6 5 30 30 H 1.08009 * 119.94786 * 179.97438 * 9 8 6 31 31 H 0.96994 * 120.00052 * 184.96929 * 15 14 12 32 32 H 1.09003 * 117.50238 * 214.99832 * 20 11 10 33 33 H 1.09002 * 117.50244 * 0.02562 * 20 11 10 34 34 H 1.09008 * 117.49845 * 359.97438 * 21 11 10 35 35 H 1.08996 * 117.50136 * 144.99219 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9695 -0.7281 1.0816 5 6 1.7466 -0.2875 2.3799 6 6 2.2482 -1.0083 3.4482 7 9 2.0366 -0.5788 4.7116 8 6 2.9674 -2.1709 3.2235 9 6 3.1849 -2.6134 1.9322 10 6 2.6862 -1.8974 0.8613 11 6 2.9250 -2.3814 -0.5457 12 6 3.7774 -1.4843 -1.4057 13 1 3.5853 -1.4111 -2.4660 14 6 4.8026 -0.7572 -0.8390 15 7 5.1435 -0.9671 0.4137 16 14 5.7023 0.5319 -1.8482 17 1 4.7639 1.6268 -2.2027 18 1 6.8298 1.0836 -1.0547 19 1 6.2287 -0.0902 -3.0897 20 6 3.0461 -3.8911 -0.7625 21 6 1.7922 -3.1484 -1.2308 22 1 -0.3634 0.5533 0.8660 23 1 -0.3633 0.4732 -0.9122 24 1 -0.3632 -1.0267 0.0463 25 1 3.0827 1.3433 -0.0713 26 1 1.5894 1.9164 -0.8523 27 1 1.7046 1.8723 0.9234 28 1 1.1863 0.6192 2.5545 29 1 3.3582 -2.7330 4.0589 30 1 3.7463 -3.5199 1.7602 31 1 5.8148 -0.4072 0.8341 32 1 3.7423 -4.2355 -1.5272 33 1 2.9526 -4.5343 0.1124 34 1 0.8743 -3.3033 -0.6635 35 1 1.6634 -3.0042 -2.3034 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260464035.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:53 Heat of formation + Delta-G solvation = 9.259353 kcal Electronic energy + Delta-G solvation = -19020.770548 eV Core-core repulsion = 16127.001749 eV Total energy + Delta-G solvation = -2893.768798 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.72015 -40.79536 -37.84916 -36.78072 -33.99312 -31.00371 -30.48072 -28.35405 -27.45494 -25.45082 -23.90293 -22.90754 -21.79343 -20.91561 -18.67576 -18.19332 -17.20540 -16.55798 -16.40707 -16.17279 -15.95894 -15.64300 -15.22601 -15.08493 -14.62852 -14.02688 -13.89499 -13.23748 -13.16575 -12.99291 -12.89701 -12.79544 -12.53456 -12.35309 -12.23584 -11.97353 -11.85753 -11.25897 -10.98007 -10.54991 -10.03447 -9.60481 -9.15523 -8.98381 -7.86505 -5.94765 0.52214 0.59273 1.44504 1.48249 1.52320 2.52315 2.90461 3.16616 3.18648 3.54868 3.82556 4.01387 4.19877 4.23683 4.42159 4.46005 4.55835 4.65892 4.71593 4.74836 4.95731 4.97705 5.02453 5.05397 5.07767 5.09524 5.28600 5.33830 5.50611 5.64974 5.73727 5.88517 5.93544 6.19504 6.26476 6.55689 6.75755 6.99431 7.61541 9.08136 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.018206 B = 0.010550 C = 0.010183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.623254 B = 2653.396817 C = 2749.034704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.494 5.494 3 C 0.043 3.957 4 C 0.115 3.885 5 C -0.196 4.196 6 C 0.061 3.939 7 F -0.154 7.154 8 C -0.159 4.159 9 C -0.073 4.073 10 C 0.042 3.958 11 C 0.076 3.924 12 C -0.464 4.464 13 H 0.046 0.954 14 C 0.045 3.955 15 N -0.889 5.889 16 Si 0.920 3.080 17 H -0.270 1.270 18 H -0.294 1.294 19 H -0.279 1.279 20 C -0.212 4.212 21 C -0.174 4.174 22 H 0.030 0.970 23 H 0.083 0.917 24 H 0.063 0.937 25 H 0.042 0.958 26 H 0.081 0.919 27 H 0.028 0.972 28 H 0.128 0.872 29 H 0.142 0.858 30 H 0.122 0.878 31 H 0.253 0.747 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.374 0.771 2.495 7.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.214 5.214 3 C -0.104 4.104 4 C 0.021 3.979 5 C -0.217 4.217 6 C 0.042 3.958 7 F -0.133 7.133 8 C -0.178 4.178 9 C -0.091 4.091 10 C 0.040 3.960 11 C 0.075 3.925 12 C -0.501 4.501 13 H 0.064 0.936 14 C -0.156 4.156 15 N -0.527 5.527 16 Si 0.748 3.252 17 H -0.195 1.195 18 H -0.221 1.221 19 H -0.205 1.205 20 C -0.250 4.250 21 C -0.211 4.211 22 H 0.048 0.952 23 H 0.102 0.898 24 H 0.081 0.919 25 H 0.061 0.939 26 H 0.100 0.900 27 H 0.046 0.954 28 H 0.146 0.854 29 H 0.160 0.840 30 H 0.140 0.860 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.058 0.612 2.198 7.418 hybrid contribution 0.652 1.257 0.464 1.490 sum -6.406 1.869 2.661 7.184 Atomic orbital electron populations 1.22453 0.85555 1.02004 1.01324 1.59399 1.08034 1.13490 1.40489 1.22271 1.00036 0.87804 1.00336 1.18291 0.97862 0.94252 0.87478 1.21497 1.05389 1.01915 0.92858 1.17443 1.03517 0.96592 0.78296 1.91399 1.93846 1.89925 1.38178 1.21092 1.01655 0.96562 0.98441 1.20689 0.97259 1.00173 0.91006 1.19170 0.90431 0.92002 0.94379 1.17551 0.95989 0.88917 0.90006 1.20371 1.11894 1.24773 0.93102 0.93597 1.25221 0.96742 0.97917 0.95691 1.70073 1.31903 1.38074 1.12640 0.86225 0.78408 0.81348 0.79244 1.19542 1.22059 1.20510 1.23142 1.00851 0.98687 1.02306 1.22760 0.91993 1.06831 0.99544 0.95168 0.89791 0.91858 0.93934 0.90013 0.95379 0.85363 0.84046 0.86008 0.93766 0.91035 0.90216 0.90275 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 9.32 127.69 1.19 2.18 16 2 N -0.49 -18.88 3.94 -745.10 -2.93 -21.81 16 3 C 0.04 1.54 9.33 127.69 1.19 2.73 16 4 C 0.12 4.76 4.63 38.21 0.18 4.94 16 5 C -0.20 -7.53 8.63 22.44 0.19 -7.34 16 6 C 0.06 2.36 7.30 22.36 0.16 2.52 16 7 F -0.15 -5.65 17.27 44.97 0.78 -4.87 16 8 C -0.16 -6.03 10.02 22.34 0.22 -5.80 16 9 C -0.07 -3.03 8.59 22.24 0.19 -2.84 16 10 C 0.04 1.84 3.20 -19.73 -0.06 1.78 16 11 C 0.08 3.48 1.59 -53.68 -0.09 3.40 16 12 C -0.46 -23.70 8.51 25.60 0.22 -23.48 16 13 H 0.05 2.41 7.83 -2.91 -0.02 2.38 16 14 C 0.04 2.31 4.94 84.65 0.42 2.73 16 15 N -0.89 -47.24 11.13 21.45 0.24 -47.01 16 16 Si 0.92 41.90 29.39 68.60 2.02 43.92 16 17 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 18 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 C -0.21 -8.88 9.43 30.62 0.29 -8.59 16 21 C -0.17 -6.98 9.94 30.62 0.30 -6.68 16 22 H 0.03 0.81 7.63 -2.39 -0.02 0.80 16 23 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.06 1.89 8.10 -2.38 -0.02 1.87 16 25 H 0.04 1.81 7.64 -2.38 -0.02 1.80 16 26 H 0.08 2.55 8.14 -2.39 -0.02 2.54 16 27 H 0.03 0.91 7.06 -2.39 -0.02 0.90 16 28 H 0.13 4.44 7.07 -2.91 -0.02 4.42 16 29 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 30 H 0.12 4.97 6.98 -2.91 -0.02 4.95 16 31 H 0.25 13.40 8.32 -92.71 -0.77 12.62 16 32 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.08 3.07 7.10 -2.39 -0.02 3.05 16 34 H 0.08 2.92 8.14 -2.38 -0.02 2.90 16 35 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -54.83 294.97 5.59 -49.25 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 1.08 Total: 14.97 kcal Atomic # 6 Polarization: -38.86 SS G_CDS: 4.41 Total: -34.45 kcal Atomic # 7 Polarization: -66.12 SS G_CDS: -2.69 Total: -68.82 kcal Atomic # 9 Polarization: -5.65 SS G_CDS: 0.78 Total: -4.87 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.02 Total: 43.92 kcal Total: -54.83 5.59 -49.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260464035.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.506 kcal (2) G-P(sol) polarization free energy of solvation -54.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds