Wall clock time and date at job start Mon Mar 30 2020 07:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46904 * 110.99820 * 2 1 4 4 C 1.39840 * 110.99934 * 123.95307 * 2 1 3 5 5 C 1.38824 * 120.08184 * 300.00518 * 4 2 1 6 6 C 1.38156 * 119.95075 * 179.97438 * 5 4 2 7 7 C 1.50702 * 119.94312 * 179.97438 * 6 5 4 8 8 C 1.50694 * 115.54958 * 54.35403 * 7 6 5 9 9 H 1.08006 * 120.00058 * 263.13443 * 8 7 6 10 10 C 1.37880 * 120.00122 * 83.14021 * 8 7 6 11 11 N 1.31510 * 119.99952 * 353.10240 * 10 8 7 12 12 Si 1.86800 * 120.00054 * 173.10296 * 10 8 7 13 13 H 1.48501 * 109.46929 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47055 * 119.99550 * 12 10 8 15 15 H 1.48497 * 109.47304 * 239.99667 * 12 10 8 16 16 C 1.52998 * 117.49790 * 268.67849 * 7 6 5 17 17 C 1.53003 * 117.49564 * 200.02159 * 7 6 5 18 18 C 1.38275 * 120.11141 * 0.02562 * 6 5 4 19 19 C 1.38285 * 120.15796 * 0.23459 * 18 6 5 20 20 C 1.38284 * 120.05243 * 359.48944 * 19 18 6 21 21 F 1.35098 * 120.05539 * 180.25252 * 20 19 18 22 22 H 1.08994 * 109.47048 * 296.04647 * 1 2 3 23 23 H 1.09006 * 109.46731 * 56.04691 * 1 2 3 24 24 H 1.08997 * 109.47060 * 176.04499 * 1 2 3 25 25 H 1.09006 * 109.46701 * 183.95111 * 3 2 1 26 26 H 1.08993 * 109.47277 * 303.95059 * 3 2 1 27 27 H 1.08998 * 109.47178 * 63.95760 * 3 2 1 28 28 H 1.08004 * 120.02469 * 359.97438 * 5 4 2 29 29 H 0.96999 * 120.00164 * 174.98889 * 11 10 8 30 30 H 1.09004 * 117.50033 * 0.02562 * 16 7 6 31 31 H 1.09001 * 117.49526 * 145.02238 * 16 7 6 32 32 H 1.09000 * 117.49735 * 214.97717 * 17 7 6 33 33 H 1.08999 * 117.50005 * 0.02562 * 17 7 6 34 34 H 1.07999 * 119.91916 * 179.97438 * 18 6 5 35 35 H 1.08004 * 119.97569 * 179.72171 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9702 -0.7292 1.0829 5 6 1.6587 -0.3493 2.3814 6 6 2.1548 -1.0720 3.4492 7 6 1.8171 -0.6591 4.8587 8 6 0.3470 -0.5269 5.1626 9 1 -0.1278 0.4423 5.1218 10 6 -0.3918 -1.6432 5.4929 11 7 0.1505 -2.8385 5.4113 12 14 -2.1632 -1.4577 6.0562 13 1 -2.5325 -0.0194 6.0626 14 1 -3.0576 -2.1948 5.1278 15 1 -2.3074 -2.0115 7.4265 16 6 2.7733 0.3077 5.5600 17 6 2.7278 -1.1636 5.9800 18 6 2.9616 -2.1727 3.2270 19 6 3.2792 -2.5519 1.9356 20 6 2.7816 -1.8368 0.8617 21 9 3.0876 -2.2103 -0.4001 22 1 -0.3633 0.4512 0.9232 23 1 -0.3633 0.5740 -0.8525 24 1 -0.3633 -1.0252 -0.0709 25 1 3.0829 1.3432 -0.0708 26 1 1.5899 1.9163 -0.8524 27 1 1.7044 1.8724 0.9233 28 1 1.0290 0.5105 2.5566 29 1 -0.3438 -3.6169 5.7121 30 1 3.6465 0.6455 5.0017 31 1 2.3391 1.0392 6.2415 32 1 2.2636 -1.3993 6.9376 33 1 3.5713 -1.7936 5.6981 34 1 3.3481 -2.7351 4.0640 35 1 3.9133 -3.4095 1.7655 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260469259.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:05 Heat of formation + Delta-G solvation = 12.479574 kcal Electronic energy + Delta-G solvation = -18362.836815 eV Core-core repulsion = 15469.207656 eV Total energy + Delta-G solvation = -2893.629159 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.11707 -39.24749 -37.05328 -35.10546 -32.04867 -29.76564 -28.99039 -27.34368 -25.70934 -24.19864 -22.36986 -21.51145 -20.69279 -19.01300 -17.10469 -16.52286 -15.67805 -15.31578 -15.17147 -14.68672 -14.34094 -14.27523 -13.85706 -13.36153 -13.25911 -12.38063 -12.33960 -12.18283 -11.89889 -11.50934 -11.47466 -11.35137 -11.12160 -10.98089 -10.55648 -10.48745 -10.24806 -9.76334 -9.21221 -8.57498 -8.43657 -8.21962 -8.18103 -7.47371 -6.13900 -4.22102 1.86933 1.99406 3.21521 3.30996 3.33377 4.13895 4.29062 4.34719 4.99163 5.13836 5.23726 5.36208 5.50405 5.58134 5.68168 5.70611 5.83006 5.94253 5.99772 6.10036 6.17850 6.21117 6.26574 6.47842 6.61828 6.64101 6.77334 6.93150 6.99169 7.12058 7.20582 7.32164 7.40365 7.60141 7.75559 7.88526 8.27839 8.78953 9.44593 10.93953 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020679 B = 0.008165 C = 0.007309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.702855 B = 3428.388618 C = 3830.001980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.505 5.505 3 C 0.030 3.970 4 C 0.037 3.963 5 C -0.106 4.106 6 C 0.006 3.994 7 C 0.068 3.932 8 C -0.496 4.496 9 H 0.062 0.938 10 C 0.075 3.925 11 N -0.867 5.867 12 Si 0.887 3.113 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.282 1.282 16 C -0.200 4.200 17 C -0.158 4.158 18 C -0.086 4.086 19 C -0.157 4.157 20 C 0.089 3.911 21 F -0.144 7.144 22 H 0.037 0.963 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.033 0.967 28 H 0.123 0.877 29 H 0.261 0.739 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.128 0.872 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.756 3.972 -6.205 8.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.226 5.226 3 C -0.117 4.117 4 C -0.057 4.057 5 C -0.126 4.126 6 C 0.005 3.995 7 C 0.068 3.932 8 C -0.533 4.533 9 H 0.080 0.920 10 C -0.129 4.129 11 N -0.502 5.502 12 Si 0.715 3.285 13 H -0.196 1.196 14 H -0.210 1.210 15 H -0.208 1.208 16 C -0.237 4.237 17 C -0.196 4.196 18 C -0.104 4.104 19 C -0.177 4.177 20 C 0.069 3.931 21 F -0.123 7.123 22 H 0.055 0.945 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.052 0.948 28 H 0.141 0.859 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.146 0.854 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.848 3.537 -6.745 8.533 hybrid contribution -1.294 0.143 0.890 1.576 sum 2.554 3.680 -5.855 7.372 Atomic orbital electron populations 1.22439 0.86091 1.02631 1.00720 1.59576 1.08432 1.13734 1.40830 1.22415 1.00716 0.87971 1.00631 1.18649 1.01039 0.96235 0.89800 1.21201 0.99828 1.00690 0.90901 1.19727 0.91287 0.92606 0.95896 1.17678 0.92313 0.97649 0.85599 1.20373 0.90884 0.93689 1.48364 0.92028 1.24966 0.98000 0.95112 0.94862 1.70024 1.38058 0.97831 1.44316 0.86613 0.85072 0.78365 0.78492 1.19644 1.20956 1.20812 1.23028 1.01726 0.93625 1.05304 1.22638 1.01586 0.94016 1.01316 1.20981 0.97457 0.96633 0.95299 1.20965 1.03417 1.01134 0.92144 1.17364 1.00746 0.96140 0.78833 1.91403 1.91754 1.90931 1.38176 0.94463 0.91460 0.91287 0.91506 0.91389 0.94849 0.85881 0.92932 0.91469 0.90054 0.89836 0.91380 0.85432 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.35 60.07 0.56 0.99 16 2 N -0.50 -8.56 4.83 -186.77 -0.90 -9.46 16 3 C 0.03 0.42 9.39 60.07 0.56 0.98 16 4 C 0.04 0.72 4.74 -83.68 -0.40 0.32 16 5 C -0.11 -2.19 7.97 -39.39 -0.31 -2.51 16 6 C 0.01 0.14 5.24 -104.64 -0.55 -0.41 16 7 C 0.07 1.59 1.58 -156.81 -0.25 1.34 16 8 C -0.50 -12.81 8.54 -34.44 -0.29 -13.11 16 9 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 10 C 0.08 1.98 5.40 -17.82 -0.10 1.88 16 11 N -0.87 -23.52 13.03 55.43 0.72 -22.80 16 12 Si 0.89 20.40 29.55 -169.99 -5.02 15.38 16 13 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 16 C -0.20 -4.11 9.94 -26.70 -0.27 -4.38 16 17 C -0.16 -3.47 9.12 -26.69 -0.24 -3.72 16 18 C -0.09 -1.76 9.30 -39.55 -0.37 -2.13 16 19 C -0.16 -2.95 10.02 -39.55 -0.40 -3.35 16 20 C 0.09 1.74 7.31 -39.25 -0.29 1.45 16 21 F -0.14 -2.76 17.08 2.25 0.04 -2.72 16 22 H 0.04 0.59 7.13 -51.93 -0.37 0.22 16 23 H 0.07 0.84 8.12 -51.93 -0.42 0.42 16 24 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.07 0.79 8.12 -51.93 -0.42 0.37 16 27 H 0.03 0.47 7.35 -51.93 -0.38 0.09 16 28 H 0.12 2.52 7.02 -52.48 -0.37 2.15 16 29 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 32 H 0.08 1.94 8.14 -51.93 -0.42 1.52 16 33 H 0.07 1.38 6.56 -51.93 -0.34 1.04 16 34 H 0.13 2.56 6.41 -52.49 -0.34 2.22 16 35 H 0.13 2.00 8.06 -52.48 -0.42 1.58 16 LS Contribution 299.30 15.07 4.51 4.51 Total: -1.00 -27.48 299.30 -7.71 -35.19 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -4.72 Total: 2.52 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -2.33 Total: -22.62 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: -0.18 Total: -32.26 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.04 Total: -2.72 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.48 -7.71 -35.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260469259.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.671 kcal (2) G-P(sol) polarization free energy of solvation -27.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds