Wall clock time and date at job start Mon Mar 30 2020 07:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46904 * 110.99820 * 2 1 4 4 C 1.39840 * 110.99934 * 123.95307 * 2 1 3 5 5 C 1.38824 * 120.08184 * 300.00518 * 4 2 1 6 6 C 1.38156 * 119.95075 * 179.97438 * 5 4 2 7 7 C 1.50702 * 119.94312 * 179.97438 * 6 5 4 8 8 C 1.50694 * 115.54958 * 54.35403 * 7 6 5 9 9 H 1.08006 * 120.00058 * 263.13443 * 8 7 6 10 10 C 1.37880 * 120.00122 * 83.14021 * 8 7 6 11 11 N 1.31510 * 119.99952 * 353.10240 * 10 8 7 12 12 Si 1.86800 * 120.00054 * 173.10296 * 10 8 7 13 13 H 1.48501 * 109.46929 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47055 * 119.99550 * 12 10 8 15 15 H 1.48497 * 109.47304 * 239.99667 * 12 10 8 16 16 C 1.52998 * 117.49790 * 268.67849 * 7 6 5 17 17 C 1.53003 * 117.49564 * 200.02159 * 7 6 5 18 18 C 1.38275 * 120.11141 * 0.02562 * 6 5 4 19 19 C 1.38285 * 120.15796 * 0.23459 * 18 6 5 20 20 C 1.38284 * 120.05243 * 359.48944 * 19 18 6 21 21 F 1.35098 * 120.05539 * 180.25252 * 20 19 18 22 22 H 1.08994 * 109.47048 * 296.04647 * 1 2 3 23 23 H 1.09006 * 109.46731 * 56.04691 * 1 2 3 24 24 H 1.08997 * 109.47060 * 176.04499 * 1 2 3 25 25 H 1.09006 * 109.46701 * 183.95111 * 3 2 1 26 26 H 1.08993 * 109.47277 * 303.95059 * 3 2 1 27 27 H 1.08998 * 109.47178 * 63.95760 * 3 2 1 28 28 H 1.08004 * 120.02469 * 359.97438 * 5 4 2 29 29 H 0.96999 * 120.00164 * 174.98889 * 11 10 8 30 30 H 1.09004 * 117.50033 * 0.02562 * 16 7 6 31 31 H 1.09001 * 117.49526 * 145.02238 * 16 7 6 32 32 H 1.09000 * 117.49735 * 214.97717 * 17 7 6 33 33 H 1.08999 * 117.50005 * 0.02562 * 17 7 6 34 34 H 1.07999 * 119.91916 * 179.97438 * 18 6 5 35 35 H 1.08004 * 119.97569 * 179.72171 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9702 -0.7292 1.0829 5 6 1.6587 -0.3493 2.3814 6 6 2.1548 -1.0720 3.4492 7 6 1.8171 -0.6591 4.8587 8 6 0.3470 -0.5269 5.1626 9 1 -0.1278 0.4423 5.1218 10 6 -0.3918 -1.6432 5.4929 11 7 0.1505 -2.8385 5.4113 12 14 -2.1632 -1.4577 6.0562 13 1 -2.5325 -0.0194 6.0626 14 1 -3.0576 -2.1948 5.1278 15 1 -2.3074 -2.0115 7.4265 16 6 2.7733 0.3077 5.5600 17 6 2.7278 -1.1636 5.9800 18 6 2.9616 -2.1727 3.2270 19 6 3.2792 -2.5519 1.9356 20 6 2.7816 -1.8368 0.8617 21 9 3.0876 -2.2103 -0.4001 22 1 -0.3633 0.4512 0.9232 23 1 -0.3633 0.5740 -0.8525 24 1 -0.3633 -1.0252 -0.0709 25 1 3.0829 1.3432 -0.0708 26 1 1.5899 1.9163 -0.8524 27 1 1.7044 1.8724 0.9233 28 1 1.0290 0.5105 2.5566 29 1 -0.3438 -3.6169 5.7121 30 1 3.6465 0.6455 5.0017 31 1 2.3391 1.0392 6.2415 32 1 2.2636 -1.3993 6.9376 33 1 3.5713 -1.7936 5.6981 34 1 3.3481 -2.7351 4.0640 35 1 3.9133 -3.4095 1.7655 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260469259.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:05 Heat of formation + Delta-G solvation = -1.073459 kcal Electronic energy + Delta-G solvation = -18363.424519 eV Core-core repulsion = 15469.207656 eV Total energy + Delta-G solvation = -2894.216863 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.63257 -40.75820 -38.59018 -36.65279 -34.00931 -31.30806 -30.49059 -28.51316 -27.65664 -25.57716 -23.98587 -23.12593 -22.27250 -20.69019 -18.66213 -18.28454 -17.18734 -16.85899 -16.63515 -16.53198 -16.00313 -15.59979 -15.16044 -15.02354 -14.82534 -14.04842 -13.87311 -13.40331 -13.22121 -13.18800 -13.05188 -12.92675 -12.72933 -12.63518 -12.34726 -12.07838 -11.88322 -11.51900 -10.99519 -10.50350 -10.18206 -9.72769 -9.54065 -9.08918 -8.11567 -6.24100 0.33419 0.42900 1.37986 1.42476 1.50957 2.40719 2.73701 2.85707 3.17388 3.46734 3.52795 3.97582 4.08923 4.24067 4.39049 4.40765 4.46681 4.57371 4.60154 4.62627 4.71389 4.87044 4.93651 4.94411 4.97184 5.00684 5.19645 5.30001 5.36356 5.60855 5.63457 5.71446 5.86637 5.90159 5.98319 6.36756 6.40665 6.80795 7.44293 8.95167 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020679 B = 0.008165 C = 0.007309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.702855 B = 3428.388618 C = 3830.001980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.514 5.514 3 C 0.029 3.971 4 C 0.044 3.956 5 C -0.115 4.115 6 C -0.011 4.011 7 C 0.043 3.957 8 C -0.506 4.506 9 H 0.052 0.948 10 C 0.033 3.967 11 N -0.893 5.893 12 Si 0.941 3.059 13 H -0.268 1.268 14 H -0.286 1.286 15 H -0.280 1.280 16 C -0.179 4.179 17 C -0.159 4.159 18 C -0.098 4.098 19 C -0.147 4.147 20 C 0.078 3.922 21 F -0.142 7.142 22 H 0.027 0.973 23 H 0.099 0.901 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.030 0.970 28 H 0.117 0.883 29 H 0.259 0.741 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.128 0.872 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.976 4.543 -7.226 9.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.235 5.235 3 C -0.117 4.117 4 C -0.051 4.051 5 C -0.135 4.135 6 C -0.013 4.013 7 C 0.042 3.958 8 C -0.544 4.544 9 H 0.070 0.930 10 C -0.169 4.169 11 N -0.529 5.529 12 Si 0.767 3.233 13 H -0.192 1.192 14 H -0.212 1.212 15 H -0.205 1.205 16 C -0.217 4.217 17 C -0.196 4.196 18 C -0.116 4.116 19 C -0.166 4.166 20 C 0.058 3.942 21 F -0.120 7.120 22 H 0.045 0.955 23 H 0.118 0.882 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.115 0.885 27 H 0.048 0.952 28 H 0.135 0.865 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.146 0.854 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.069 4.128 -7.767 9.691 hybrid contribution -1.341 0.010 1.148 1.765 sum 2.728 4.138 -6.619 8.269 Atomic orbital electron populations 1.22482 0.85258 1.02406 1.01656 1.59709 1.09226 1.15150 1.39452 1.22506 1.00905 0.86580 1.01742 1.18779 1.00178 0.96149 0.89974 1.21156 1.00251 1.00770 0.91341 1.19725 0.92507 0.93599 0.95431 1.17750 0.91554 0.99706 0.86751 1.20612 0.92541 0.93223 1.47979 0.92952 1.25567 1.01063 0.94992 0.95238 1.70111 1.39205 0.98185 1.45407 0.85774 0.81285 0.78294 0.77940 1.19203 1.21224 1.20542 1.23035 1.01466 0.92803 1.04348 1.22559 1.01672 0.95440 0.99960 1.21014 0.97951 0.96468 0.96134 1.21188 1.02793 1.01429 0.91163 1.17525 1.01096 0.96426 0.79119 1.91407 1.91742 1.90903 1.37977 0.95455 0.88236 0.92486 0.91411 0.88547 0.95178 0.86480 0.93154 0.89391 0.89864 0.91850 0.89983 0.85421 0.82896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 9.35 127.69 1.19 2.03 16 2 N -0.51 -16.51 4.83 -744.82 -3.59 -20.11 16 3 C 0.03 0.75 9.39 127.69 1.20 1.95 16 4 C 0.04 1.64 4.74 38.21 0.18 1.82 16 5 C -0.12 -4.70 7.97 22.39 0.18 -4.52 16 6 C -0.01 -0.49 5.24 -19.87 -0.10 -0.60 16 7 C 0.04 1.99 1.58 -53.67 -0.08 1.91 16 8 C -0.51 -26.33 8.54 25.60 0.22 -26.11 16 9 H 0.05 2.74 7.82 -2.91 -0.02 2.71 16 10 C 0.03 1.76 5.40 84.66 0.46 2.21 16 11 N -0.89 -48.83 13.03 21.45 0.28 -48.55 16 12 Si 0.94 42.09 29.55 68.60 2.03 44.12 16 13 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 14 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 15 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 16 C -0.18 -7.23 9.94 30.62 0.30 -6.92 16 17 C -0.16 -6.95 9.12 30.62 0.28 -6.67 16 18 C -0.10 -3.93 9.30 22.29 0.21 -3.72 16 19 C -0.15 -5.26 10.02 22.29 0.22 -5.04 16 20 C 0.08 2.93 7.31 22.48 0.16 3.09 16 21 F -0.14 -5.15 17.08 44.97 0.77 -4.38 16 22 H 0.03 0.84 7.13 -2.39 -0.02 0.82 16 23 H 0.10 2.22 8.12 -2.38 -0.02 2.20 16 24 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 26 H 0.10 1.94 8.12 -2.39 -0.02 1.92 16 27 H 0.03 0.80 7.35 -2.39 -0.02 0.78 16 28 H 0.12 4.83 7.02 -2.91 -0.02 4.81 16 29 H 0.26 13.66 8.32 -92.71 -0.77 12.89 16 30 H 0.09 3.15 8.14 -2.39 -0.02 3.14 16 31 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 32 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 33 H 0.08 3.29 6.56 -2.39 -0.02 3.28 16 34 H 0.13 5.05 6.41 -2.91 -0.02 5.03 16 35 H 0.15 4.52 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -57.35 299.30 4.97 -52.38 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 1.08 Total: 17.11 kcal Atomic # 6 Polarization: -44.98 SS G_CDS: 4.42 Total: -40.57 kcal Atomic # 7 Polarization: -65.34 SS G_CDS: -3.31 Total: -68.66 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.77 Total: -4.38 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -57.35 4.97 -52.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260469259.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.302 kcal (2) G-P(sol) polarization free energy of solvation -57.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds