Wall clock time and date at job start Mon Mar 30 2020 07:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48535 * 110.99699 * 2 1 4 4 C 1.54944 * 103.22544 * 159.72391 * 3 2 1 5 5 C 1.54591 * 102.92027 * 322.58163 * 4 3 2 6 6 H 1.09003 * 110.31423 * 262.94622 * 5 4 3 7 7 C 1.50696 * 110.31262 * 140.87429 * 5 4 3 8 8 H 1.07999 * 120.00319 * 241.45815 * 7 5 4 9 9 C 1.37885 * 119.99717 * 61.45198 * 7 5 4 10 10 N 1.31516 * 119.99913 * 180.02562 * 9 7 5 11 11 Si 1.86798 * 119.99766 * 0.02562 * 9 7 5 12 12 H 1.48500 * 109.47353 * 269.99586 * 11 9 7 13 13 H 1.48501 * 109.47293 * 30.00037 * 11 9 7 14 14 H 1.48504 * 109.46680 * 149.99835 * 11 9 7 15 15 C 1.47901 * 111.00092 * 117.39454 * 2 1 3 16 16 H 1.09006 * 109.91536 * 333.50604 * 15 2 1 17 17 C 1.50690 * 109.91636 * 94.80272 * 15 2 1 18 18 C 1.38274 * 119.98628 * 217.58587 * 17 15 2 19 19 C 1.38227 * 120.05011 * 179.97438 * 18 17 15 20 20 C 1.38222 * 120.02636 * 0.02562 * 19 18 17 21 21 C 1.38440 * 119.97376 * 359.97438 * 20 19 18 22 22 F 1.35100 * 120.02381 * 180.02562 * 21 20 19 23 23 C 1.38172 * 119.98906 * 37.32125 * 17 15 2 24 24 H 1.08998 * 109.47067 * 60.12640 * 1 2 3 25 25 H 1.09000 * 109.47187 * 180.12977 * 1 2 3 26 26 H 1.09006 * 109.46829 * 300.12858 * 1 2 3 27 27 H 1.08992 * 110.67325 * 41.28853 * 3 2 1 28 28 H 1.08998 * 110.66642 * 278.14926 * 3 2 1 29 29 H 1.09003 * 110.71820 * 204.22651 * 4 3 2 30 30 H 1.08999 * 110.72529 * 80.94236 * 4 3 2 31 31 H 0.97001 * 119.99646 * 179.97438 * 10 9 7 32 32 H 1.07995 * 119.97539 * 359.97438 * 18 17 15 33 33 H 1.07999 * 119.98480 * 179.97438 * 19 18 17 34 34 H 1.08000 * 120.00891 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.01491 * 359.97438 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4492 1.2107 0.5227 5 6 3.2983 0.1055 1.5930 6 1 3.2154 0.5486 2.5855 7 6 4.4717 -0.8386 1.5391 8 1 4.3145 -1.8832 1.3144 9 6 5.7460 -0.3687 1.7766 10 7 6.7701 -1.1925 1.7291 11 14 6.0178 1.4379 2.1658 12 1 6.2445 2.1875 0.9041 13 1 4.8205 1.9812 2.8562 14 1 7.2047 1.5813 3.0468 15 6 1.9991 -0.6353 1.2259 16 1 1.2758 -0.5401 2.0359 17 6 2.2938 -2.0897 0.9641 18 6 2.0439 -3.0328 1.9439 19 6 2.3132 -4.3673 1.7050 20 6 2.8333 -4.7605 0.4862 21 6 3.0839 -3.8172 -0.4956 22 9 3.5917 -4.2005 -1.6874 23 6 2.8085 -2.4812 -0.2570 24 1 -0.3633 0.5119 -0.8911 25 1 -0.3633 -1.0277 0.0023 26 1 -0.3633 0.5159 0.8889 27 1 1.4238 2.0205 0.6729 28 1 2.0041 1.7977 -1.0095 29 1 3.8122 2.1353 0.9715 30 1 4.1116 0.8837 -0.2788 31 1 7.6667 -0.8618 1.8958 32 1 1.6379 -2.7265 2.8967 33 1 2.1180 -5.1030 2.4712 34 1 3.0432 -5.8034 0.2996 35 1 2.9992 -1.7450 -1.0239 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260500060.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:23 Heat of formation + Delta-G solvation = -4.025078 kcal Electronic energy + Delta-G solvation = -18754.645203 eV Core-core repulsion = 15860.300349 eV Total energy + Delta-G solvation = -2894.344855 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.17436 -39.44942 -37.31914 -33.20300 -31.34047 -31.06273 -29.79267 -27.52004 -25.88232 -23.56367 -22.22290 -21.67605 -20.47964 -19.11930 -17.20944 -16.17935 -15.69404 -15.46426 -15.10976 -14.86218 -14.66969 -14.05236 -13.75925 -13.15852 -13.09454 -12.68296 -12.49920 -12.34578 -12.03642 -11.59514 -11.32321 -11.18740 -11.05196 -10.73939 -10.59439 -10.30272 -10.05079 -9.99679 -9.52403 -8.99631 -8.54414 -8.04921 -7.97132 -7.82205 -6.01717 -4.01846 1.92168 2.02429 3.28022 3.35713 3.37684 4.27879 4.42629 4.50249 4.96044 5.21510 5.34242 5.46053 5.48311 5.50123 5.63834 5.72374 5.80808 5.87923 5.94343 6.01473 6.10281 6.17198 6.20634 6.51723 6.56283 6.72790 6.74329 6.87420 6.89821 6.97756 7.07528 7.22929 7.52573 7.62714 7.66718 7.75402 8.53924 9.05154 9.58464 11.09353 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017667 B = 0.010869 C = 0.008141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.536521 B = 2575.431906 C = 3438.434729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.515 5.515 3 C 0.037 3.963 4 C -0.133 4.133 5 C 0.013 3.987 6 H 0.035 0.965 7 C -0.513 4.513 8 H 0.096 0.904 9 C 0.075 3.925 10 N -0.896 5.896 11 Si 0.872 3.128 12 H -0.278 1.278 13 H -0.268 1.268 14 H -0.295 1.295 15 C 0.113 3.887 16 H 0.048 0.952 17 C 0.014 3.986 18 C -0.135 4.135 19 C -0.098 4.098 20 C -0.171 4.171 21 C 0.086 3.914 22 F -0.150 7.150 23 C -0.100 4.100 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.022 0.978 27 H 0.035 0.965 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.262 0.738 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.259 -0.061 -1.429 11.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.239 5.239 3 C -0.090 4.090 4 C -0.171 4.171 5 C -0.006 4.006 6 H 0.053 0.947 7 C -0.550 4.550 8 H 0.114 0.886 9 C -0.127 4.127 10 N -0.534 5.534 11 Si 0.701 3.299 12 H -0.204 1.204 13 H -0.193 1.193 14 H -0.222 1.222 15 C 0.005 3.995 16 H 0.066 0.934 17 C 0.014 3.986 18 C -0.154 4.154 19 C -0.116 4.116 20 C -0.190 4.190 21 C 0.067 3.933 22 F -0.129 7.129 23 C -0.119 4.119 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.053 0.947 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.890 -0.370 -1.926 11.066 hybrid contribution 0.279 1.412 0.794 1.644 sum -10.612 1.042 -1.132 10.723 Atomic orbital electron populations 1.22478 0.88950 1.01630 0.99982 1.64532 1.06807 1.14943 1.37579 1.23203 0.96602 0.89187 1.00049 1.23030 0.94679 0.98780 1.00624 1.20027 0.93103 0.93346 0.94121 0.94744 1.21363 0.89013 0.96916 1.47719 0.88644 1.24973 0.96190 0.96790 0.94735 1.69901 0.99060 1.34762 1.49681 0.87054 0.77365 0.86916 0.78528 1.20365 1.19314 1.22205 1.21381 0.97354 0.91187 0.89539 0.93380 1.19153 0.93339 0.94016 0.92128 1.20889 1.02881 0.92750 0.98896 1.20694 0.99155 0.95916 0.95858 1.20867 1.04938 0.98881 0.94341 1.17714 1.00136 0.93719 0.81732 1.91428 1.85225 1.91933 1.44326 1.20823 0.98898 0.93227 0.98995 0.91865 0.91685 0.95956 0.94656 0.90912 0.93095 0.90208 0.92782 0.86499 0.86159 0.86074 0.84519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.41 60.07 0.57 0.82 16 2 N -0.52 -8.92 4.35 -232.16 -1.01 -9.93 16 3 C 0.04 0.62 6.56 -1.89 -0.01 0.61 16 4 C -0.13 -2.72 4.75 -24.87 -0.12 -2.84 16 5 C 0.01 0.30 2.44 -90.42 -0.22 0.08 16 6 H 0.03 0.79 7.27 -51.93 -0.38 0.41 16 7 C -0.51 -13.61 8.07 -34.44 -0.28 -13.89 16 8 H 0.10 2.72 4.84 -52.49 -0.25 2.47 16 9 C 0.07 2.09 5.46 -17.82 -0.10 2.00 16 10 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 11 Si 0.87 21.19 24.70 -169.99 -4.20 16.99 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.27 -6.19 6.36 56.52 0.36 -5.83 16 14 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 15 C 0.11 2.17 2.67 -67.80 -0.18 1.99 16 16 H 0.05 0.85 7.60 -51.93 -0.39 0.46 16 17 C 0.01 0.29 3.06 -104.64 -0.32 -0.04 16 18 C -0.14 -2.44 9.56 -39.57 -0.38 -2.82 16 19 C -0.10 -1.64 10.04 -39.59 -0.40 -2.04 16 20 C -0.17 -3.05 10.03 -39.51 -0.40 -3.44 16 21 C 0.09 1.73 7.30 -39.42 -0.29 1.44 16 22 F -0.15 -3.03 17.27 2.25 0.04 -2.99 16 23 C -0.10 -2.08 7.68 -39.51 -0.30 -2.39 16 24 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.02 0.29 7.99 -51.93 -0.42 -0.13 16 27 H 0.04 0.55 8.00 -51.93 -0.42 0.13 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.05 1.02 5.94 -51.93 -0.31 0.71 16 30 H 0.08 1.77 7.84 -51.93 -0.41 1.37 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 32 H 0.12 1.87 8.05 -52.49 -0.42 1.44 16 33 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 34 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.14 2.94 7.65 -52.49 -0.40 2.54 16 LS Contribution 281.92 15.07 4.25 4.25 Total: -1.00 -29.44 281.92 -7.26 -36.71 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -4.69 Total: 1.75 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -2.43 Total: -20.52 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.24 Total: -36.19 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.04 Total: -2.99 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.20 Total: 16.99 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.44 -7.26 -36.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260500060.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.680 kcal (2) G-P(sol) polarization free energy of solvation -29.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds