Wall clock time and date at job start Mon Mar 30 2020 07:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.48535 * 110.99699 * 2 1 4 4 C 1.54944 * 103.22544 * 159.72391 * 3 2 1 5 5 C 1.54591 * 102.92027 * 322.58163 * 4 3 2 6 6 H 1.09003 * 110.31423 * 262.94622 * 5 4 3 7 7 C 1.50696 * 110.31262 * 140.87429 * 5 4 3 8 8 H 1.07999 * 120.00319 * 241.45815 * 7 5 4 9 9 C 1.37885 * 119.99717 * 61.45198 * 7 5 4 10 10 N 1.31516 * 119.99913 * 180.02562 * 9 7 5 11 11 Si 1.86798 * 119.99766 * 0.02562 * 9 7 5 12 12 H 1.48500 * 109.47353 * 269.99586 * 11 9 7 13 13 H 1.48501 * 109.47293 * 30.00037 * 11 9 7 14 14 H 1.48504 * 109.46680 * 149.99835 * 11 9 7 15 15 C 1.47901 * 111.00092 * 117.39454 * 2 1 3 16 16 H 1.09006 * 109.91536 * 333.50604 * 15 2 1 17 17 C 1.50690 * 109.91636 * 94.80272 * 15 2 1 18 18 C 1.38274 * 119.98628 * 217.58587 * 17 15 2 19 19 C 1.38227 * 120.05011 * 179.97438 * 18 17 15 20 20 C 1.38222 * 120.02636 * 0.02562 * 19 18 17 21 21 C 1.38440 * 119.97376 * 359.97438 * 20 19 18 22 22 F 1.35100 * 120.02381 * 180.02562 * 21 20 19 23 23 C 1.38172 * 119.98906 * 37.32125 * 17 15 2 24 24 H 1.08998 * 109.47067 * 60.12640 * 1 2 3 25 25 H 1.09000 * 109.47187 * 180.12977 * 1 2 3 26 26 H 1.09006 * 109.46829 * 300.12858 * 1 2 3 27 27 H 1.08992 * 110.67325 * 41.28853 * 3 2 1 28 28 H 1.08998 * 110.66642 * 278.14926 * 3 2 1 29 29 H 1.09003 * 110.71820 * 204.22651 * 4 3 2 30 30 H 1.08999 * 110.72529 * 80.94236 * 4 3 2 31 31 H 0.97001 * 119.99646 * 179.97438 * 10 9 7 32 32 H 1.07995 * 119.97539 * 359.97438 * 18 17 15 33 33 H 1.07999 * 119.98480 * 179.97438 * 19 18 17 34 34 H 1.08000 * 120.00891 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.01491 * 359.97438 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4492 1.2107 0.5227 5 6 3.2983 0.1055 1.5930 6 1 3.2154 0.5486 2.5855 7 6 4.4717 -0.8386 1.5391 8 1 4.3145 -1.8832 1.3144 9 6 5.7460 -0.3687 1.7766 10 7 6.7701 -1.1925 1.7291 11 14 6.0178 1.4379 2.1658 12 1 6.2445 2.1875 0.9041 13 1 4.8205 1.9812 2.8562 14 1 7.2047 1.5813 3.0468 15 6 1.9991 -0.6353 1.2259 16 1 1.2758 -0.5401 2.0359 17 6 2.2938 -2.0897 0.9641 18 6 2.0439 -3.0328 1.9439 19 6 2.3132 -4.3673 1.7050 20 6 2.8333 -4.7605 0.4862 21 6 3.0839 -3.8172 -0.4956 22 9 3.5917 -4.2005 -1.6874 23 6 2.8085 -2.4812 -0.2570 24 1 -0.3633 0.5119 -0.8911 25 1 -0.3633 -1.0277 0.0023 26 1 -0.3633 0.5159 0.8889 27 1 1.4238 2.0205 0.6729 28 1 2.0041 1.7977 -1.0095 29 1 3.8122 2.1353 0.9715 30 1 4.1116 0.8837 -0.2788 31 1 7.6667 -0.8618 1.8958 32 1 1.6379 -2.7265 2.8967 33 1 2.1180 -5.1030 2.4712 34 1 3.0432 -5.8034 0.2996 35 1 2.9992 -1.7450 -1.0239 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260500060.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:22 Heat of formation + Delta-G solvation = -22.116349 kcal Electronic energy + Delta-G solvation = -18755.429700 eV Core-core repulsion = 15860.300349 eV Total energy + Delta-G solvation = -2895.129351 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.74182 -40.92086 -38.74146 -35.03993 -32.97023 -32.63274 -31.25407 -29.07262 -27.38768 -25.17919 -23.69767 -23.16104 -21.99569 -20.72129 -18.97639 -17.83612 -17.22743 -16.90904 -16.63960 -16.43452 -16.28735 -15.71985 -15.15887 -14.88525 -14.56062 -14.15522 -13.93917 -13.86081 -13.51284 -13.20238 -12.97269 -12.59053 -12.46801 -12.40154 -12.15133 -11.87023 -11.71008 -11.59176 -11.33376 -10.87053 -10.64989 -9.50799 -9.33766 -9.28077 -8.14778 -6.17362 0.44282 0.57738 1.34982 1.37037 1.45199 2.40358 2.84582 3.13926 3.20272 3.49061 3.88911 4.05240 4.11057 4.16880 4.30775 4.35358 4.44241 4.53466 4.66303 4.71506 4.74897 4.77223 4.93255 5.04913 5.06683 5.19048 5.26834 5.31265 5.41444 5.46620 5.55978 5.74903 5.76389 6.10880 6.21173 6.28848 6.47464 6.93280 7.46033 8.98899 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017667 B = 0.010869 C = 0.008141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.536521 B = 2575.431906 C = 3438.434729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.531 5.531 3 C 0.047 3.953 4 C -0.134 4.134 5 C 0.005 3.995 6 H 0.035 0.965 7 C -0.500 4.500 8 H 0.069 0.931 9 C 0.014 3.986 10 N -0.951 5.951 11 Si 0.929 3.071 12 H -0.273 1.273 13 H -0.244 1.244 14 H -0.304 1.304 15 C 0.119 3.881 16 H 0.067 0.933 17 C -0.001 4.001 18 C -0.143 4.143 19 C -0.092 4.092 20 C -0.173 4.173 21 C 0.059 3.941 22 F -0.158 7.158 23 C -0.120 4.120 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.037 0.963 27 H 0.059 0.941 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.259 0.741 32 H 0.140 0.860 33 H 0.160 0.840 34 H 0.146 0.854 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.600 0.830 -0.496 13.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.255 5.255 3 C -0.081 4.081 4 C -0.172 4.172 5 C -0.014 4.014 6 H 0.053 0.947 7 C -0.538 4.538 8 H 0.087 0.913 9 C -0.183 4.183 10 N -0.593 5.593 11 Si 0.756 3.244 12 H -0.198 1.198 13 H -0.167 1.167 14 H -0.231 1.231 15 C 0.010 3.990 16 H 0.085 0.915 17 C -0.002 4.002 18 C -0.161 4.161 19 C -0.110 4.110 20 C -0.192 4.192 21 C 0.040 3.960 22 F -0.137 7.137 23 C -0.139 4.139 24 H 0.099 0.901 25 H 0.083 0.917 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.158 0.842 33 H 0.178 0.822 34 H 0.164 0.836 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.275 0.538 -0.999 13.324 hybrid contribution 0.950 1.029 0.483 1.482 sum -12.325 1.567 -0.516 12.435 Atomic orbital electron populations 1.22534 0.86527 1.02232 1.01546 1.64512 1.09126 1.15140 1.36717 1.23175 0.94030 0.89454 1.01417 1.22875 0.97005 0.98047 0.99265 1.20024 0.93125 0.93501 0.94785 0.94663 1.21689 0.90385 0.96795 1.44931 0.91292 1.25749 0.96160 1.00916 0.95428 1.70062 0.99481 1.36940 1.52770 0.86124 0.77640 0.82182 0.78454 1.19823 1.16747 1.23136 1.21266 0.96172 0.90562 0.90969 0.91468 1.19365 0.93739 0.94978 0.92105 1.21284 1.02367 0.93136 0.99325 1.21176 0.97315 0.96383 0.96119 1.21236 1.04154 0.99737 0.94089 1.18061 1.01290 0.94314 0.82287 1.91396 1.85500 1.91963 1.44878 1.20765 1.00471 0.93260 0.99412 0.90074 0.91660 0.94475 0.92320 0.89228 0.92488 0.93011 0.93204 0.84184 0.82244 0.83579 0.86592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.41 127.69 1.20 1.68 16 2 N -0.53 -17.21 4.35 -888.42 -3.86 -21.08 16 3 C 0.05 1.43 6.56 86.65 0.57 1.99 16 4 C -0.13 -5.27 4.75 31.80 0.15 -5.12 16 5 C 0.00 0.22 2.44 -10.66 -0.03 0.19 16 6 H 0.04 1.53 7.27 -2.39 -0.02 1.51 16 7 C -0.50 -26.86 8.07 25.60 0.21 -26.66 16 8 H 0.07 4.04 4.84 -2.91 -0.01 4.02 16 9 C 0.01 0.77 5.46 84.66 0.46 1.23 16 10 N -0.95 -59.41 13.96 21.45 0.30 -59.11 16 11 Si 0.93 43.84 24.70 68.60 1.69 45.54 16 12 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.24 -10.41 6.36 99.48 0.63 -9.78 16 14 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 15 C 0.12 4.33 2.67 44.31 0.12 4.45 16 16 H 0.07 2.17 7.60 -2.38 -0.02 2.15 16 17 C 0.00 -0.04 3.06 -19.87 -0.06 -0.10 16 18 C -0.14 -4.87 9.56 22.28 0.21 -4.65 16 19 C -0.09 -2.87 10.04 22.26 0.22 -2.65 16 20 C -0.17 -5.97 10.03 22.31 0.22 -5.75 16 21 C 0.06 2.42 7.30 22.38 0.16 2.58 16 22 F -0.16 -6.58 17.27 44.97 0.78 -5.80 16 23 C -0.12 -5.08 7.68 22.31 0.17 -4.91 16 24 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 26 H 0.04 0.81 7.99 -2.38 -0.02 0.79 16 27 H 0.06 1.55 8.00 -2.39 -0.02 1.53 16 28 H 0.09 2.45 8.14 -2.39 -0.02 2.44 16 29 H 0.06 2.14 5.94 -2.39 -0.01 2.13 16 30 H 0.05 2.30 7.84 -2.39 -0.02 2.29 16 31 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 32 H 0.14 4.04 8.05 -2.91 -0.02 4.02 16 33 H 0.16 3.67 8.06 -2.91 -0.02 3.64 16 34 H 0.15 4.18 8.06 -2.91 -0.02 4.16 16 35 H 0.12 5.25 7.65 -2.91 -0.02 5.22 16 Total: -1.00 -65.40 281.92 3.53 -61.88 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 1.00 Total: 16.27 kcal Atomic # 6 Polarization: -41.32 SS G_CDS: 3.62 Total: -37.70 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -3.57 Total: -80.18 kcal Atomic # 9 Polarization: -6.58 SS G_CDS: 0.78 Total: -5.80 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.69 Total: 45.54 kcal Total: -65.40 3.53 -61.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260500060.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.760 kcal (2) G-P(sol) polarization free energy of solvation -65.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds