Wall clock time and date at job start Mon Mar 30 2020 07:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.48529 * 110.99984 * 2 1 4 4 C 1.54937 * 103.22905 * 159.72064 * 3 2 1 5 5 C 1.54599 * 102.92016 * 322.58478 * 4 3 2 6 6 H 1.09000 * 110.39332 * 140.91557 * 5 4 3 7 7 C 1.50702 * 110.30771 * 263.04596 * 5 4 3 8 8 H 1.07994 * 120.00657 * 115.71138 * 7 5 4 9 9 C 1.37885 * 119.99439 * 295.71476 * 7 5 4 10 10 N 1.31519 * 120.00179 * 0.02562 * 9 7 5 11 11 Si 1.86803 * 119.99793 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47031 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47149 * 119.99685 * 11 9 7 14 14 H 1.48499 * 109.46974 * 240.00127 * 11 9 7 15 15 C 1.47901 * 110.99732 * 117.39420 * 2 1 3 16 16 H 1.09000 * 110.08398 * 333.59851 * 15 2 1 17 17 C 1.50694 * 109.91880 * 94.80456 * 15 2 1 18 18 C 1.38274 * 119.99061 * 217.59071 * 17 15 2 19 19 C 1.38218 * 120.05344 * 180.02562 * 18 17 15 20 20 C 1.38216 * 120.02715 * 359.97024 * 19 18 17 21 21 C 1.38436 * 119.97572 * 0.02955 * 20 19 18 22 22 F 1.35104 * 120.02854 * 179.97438 * 21 20 19 23 23 C 1.38177 * 119.98852 * 37.86497 * 17 15 2 24 24 H 1.08994 * 109.47110 * 302.60721 * 1 2 3 25 25 H 1.09004 * 109.46830 * 62.61068 * 1 2 3 26 26 H 1.09005 * 109.46476 * 182.60403 * 1 2 3 27 27 H 1.08993 * 110.66753 * 41.28029 * 3 2 1 28 28 H 1.09005 * 110.66329 * 278.15455 * 3 2 1 29 29 H 1.08998 * 110.72472 * 204.22673 * 4 3 2 30 30 H 1.08995 * 110.72672 * 80.93819 * 4 3 2 31 31 H 0.96989 * 119.99713 * 180.02562 * 10 9 7 32 32 H 1.08002 * 119.96830 * 0.03585 * 18 17 15 33 33 H 1.08001 * 119.98656 * 179.97438 * 19 18 17 34 34 H 1.08004 * 120.01333 * 180.02562 * 20 19 18 35 35 H 1.07999 * 120.01652 * 359.97438 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4492 1.2106 0.5228 5 6 3.2983 0.1054 1.5931 6 1 4.1468 -0.5779 1.5558 7 6 3.1811 0.7182 2.9649 8 1 2.2709 0.5989 3.5337 9 6 4.2362 1.4313 3.4937 10 7 5.3444 1.5771 2.8007 11 14 4.0913 2.1904 5.1944 12 1 2.7530 1.8844 5.7606 13 1 5.1437 1.6284 6.0786 14 1 4.2617 3.6623 5.0956 15 6 1.9990 -0.6353 1.2260 16 1 1.2771 -0.5431 2.0374 17 6 2.2938 -2.0898 0.9642 18 6 2.0437 -3.0329 1.9440 19 6 2.3141 -4.3672 1.7054 20 6 2.8342 -4.7604 0.4867 21 6 3.0850 -3.8172 -0.4950 22 9 3.5939 -4.2003 -1.6865 23 6 2.8191 -2.4798 -0.2528 24 1 -0.3633 0.5538 0.8656 25 1 -0.3633 0.4728 -0.9125 26 1 -0.3632 -1.0267 0.0467 27 1 1.4237 2.0204 0.6728 28 1 2.0041 1.7976 -1.0096 29 1 3.8123 2.1352 0.9716 30 1 4.1116 0.8835 -0.2786 31 1 6.0867 2.0784 3.1729 32 1 1.6367 -2.7266 2.8963 33 1 2.1188 -5.1029 2.4716 34 1 3.0450 -5.8032 0.3004 35 1 3.0182 -1.7426 -1.0166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260500083.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:31 Heat of formation + Delta-G solvation = -20.380872 kcal Electronic energy + Delta-G solvation = -18324.726995 eV Core-core repulsion = 15429.672900 eV Total energy + Delta-G solvation = -2895.054095 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.49592 -39.28063 -37.38153 -33.20829 -31.43689 -30.50076 -30.07512 -27.48622 -25.55592 -23.76734 -22.49415 -21.75150 -20.07264 -19.26632 -17.04342 -16.33153 -15.79366 -15.69108 -15.18531 -14.83354 -14.68590 -14.18018 -13.64015 -13.32292 -12.83709 -12.65379 -12.52896 -12.32347 -11.92357 -11.43137 -11.21672 -11.07847 -10.90142 -10.69166 -10.51999 -10.47157 -10.24227 -9.95611 -9.64876 -8.90087 -8.44205 -8.38968 -8.14144 -7.84330 -6.08467 -4.13923 1.60769 1.69593 3.24178 3.33001 3.35424 4.04513 4.35525 4.64941 4.67090 5.12462 5.23707 5.30875 5.52155 5.63770 5.70000 5.77283 5.87966 5.92528 6.15739 6.17783 6.21847 6.29477 6.40586 6.45769 6.58693 6.64330 6.71990 7.00774 7.05638 7.13613 7.36361 7.53899 7.58339 7.72667 7.80222 7.87738 8.34825 8.88139 9.50542 10.99623 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021850 B = 0.007368 C = 0.006611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.133652 B = 3799.240636 C = 4234.273950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.522 5.522 3 C 0.038 3.962 4 C -0.101 4.101 5 C 0.055 3.945 6 H 0.038 0.962 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.064 3.936 10 N -0.884 5.884 11 Si 0.889 3.111 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.101 3.899 16 H 0.060 0.940 17 C -0.016 4.016 18 C -0.128 4.128 19 C -0.098 4.098 20 C -0.171 4.171 21 C 0.085 3.915 22 F -0.148 7.148 23 C -0.124 4.124 24 H 0.025 0.975 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.040 0.960 31 H 0.261 0.739 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.804 -6.794 -3.965 10.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.245 5.245 3 C -0.089 4.089 4 C -0.139 4.139 5 C 0.037 3.963 6 H 0.057 0.943 7 C -0.554 4.554 8 H 0.073 0.927 9 C -0.138 4.138 10 N -0.522 5.522 11 Si 0.717 3.283 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.210 1.210 15 C -0.007 4.007 16 H 0.078 0.922 17 C -0.017 4.017 18 C -0.146 4.146 19 C -0.116 4.116 20 C -0.190 4.190 21 C 0.066 3.934 22 F -0.127 7.127 23 C -0.143 4.143 24 H 0.043 0.957 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.100 0.900 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.143 0.857 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.457 -7.000 -4.472 10.521 hybrid contribution -0.190 0.784 1.467 1.675 sum -6.648 -6.215 -3.005 9.584 Atomic orbital electron populations 1.22437 0.89405 1.01009 1.00114 1.64561 1.06733 1.15963 1.37273 1.23222 0.97985 0.88592 0.99124 1.22440 0.92118 1.02165 0.97218 1.19504 0.90219 0.92460 0.94162 0.94348 1.21206 1.00275 1.33493 1.00410 0.92684 1.24955 0.95262 0.96224 0.97359 1.69980 1.04203 1.40806 1.37183 0.86587 0.78112 0.79027 0.84608 1.19823 1.20949 1.20996 1.21708 0.99760 0.89238 0.89994 0.92223 1.19867 0.94049 0.95702 0.92072 1.21123 1.01509 0.92511 0.99497 1.20845 0.98665 0.96055 0.96000 1.20954 1.04830 0.99039 0.94217 1.17774 1.00257 0.93650 0.81711 1.91448 1.85059 1.91929 1.44289 1.21015 1.00600 0.93556 0.99128 0.95679 0.92139 0.92260 0.94102 0.91908 0.90034 0.94147 0.92931 0.85655 0.85710 0.85713 0.84257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.40 60.07 0.56 0.87 16 2 N -0.52 -9.68 4.37 -232.16 -1.01 -10.70 16 3 C 0.04 0.73 6.56 -1.90 -0.01 0.72 16 4 C -0.10 -2.29 6.16 -24.87 -0.15 -2.44 16 5 C 0.06 1.33 2.50 -90.41 -0.23 1.11 16 6 H 0.04 1.03 7.68 -51.93 -0.40 0.63 16 7 C -0.52 -13.48 8.49 -34.44 -0.29 -13.77 16 8 H 0.05 1.43 7.34 -52.49 -0.39 1.04 16 9 C 0.06 1.72 5.09 -17.81 -0.09 1.63 16 10 N -0.88 -24.64 12.15 55.43 0.67 -23.96 16 11 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.10 2.05 2.32 -67.80 -0.16 1.89 16 16 H 0.06 1.24 6.88 -51.93 -0.36 0.88 16 17 C -0.02 -0.30 4.75 -104.63 -0.50 -0.80 16 18 C -0.13 -2.13 9.68 -39.58 -0.38 -2.52 16 19 C -0.10 -1.41 10.04 -39.60 -0.40 -1.81 16 20 C -0.17 -2.55 10.03 -39.52 -0.40 -2.95 16 21 C 0.09 1.44 7.30 -39.42 -0.29 1.16 16 22 F -0.15 -2.51 17.27 2.25 0.04 -2.47 16 23 C -0.12 -2.27 9.31 -39.51 -0.37 -2.64 16 24 H 0.02 0.39 8.01 -51.93 -0.42 -0.03 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.04 0.80 7.96 -51.93 -0.41 0.39 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.08 2.05 6.77 -51.93 -0.35 1.70 16 30 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.13 1.96 8.05 -52.49 -0.42 1.54 16 33 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.12 1.54 8.06 -52.48 -0.42 1.11 16 35 H 0.14 2.63 7.67 -52.49 -0.40 2.23 16 LS Contribution 293.63 15.07 4.42 4.42 Total: -1.00 -27.35 293.63 -8.41 -35.77 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -4.82 Total: 0.89 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -2.70 Total: -19.56 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: -0.34 Total: -34.66 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.35 -8.41 -35.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260500083.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.384 kcal (2) G-P(sol) polarization free energy of solvation -27.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds