Wall clock time and date at job start Mon Mar 30 2020 07:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.48529 * 110.99984 * 2 1 4 4 C 1.54937 * 103.22905 * 159.72064 * 3 2 1 5 5 C 1.54599 * 102.92016 * 322.58478 * 4 3 2 6 6 H 1.09000 * 110.39332 * 140.91557 * 5 4 3 7 7 C 1.50702 * 110.30771 * 263.04596 * 5 4 3 8 8 H 1.07994 * 120.00657 * 115.71138 * 7 5 4 9 9 C 1.37885 * 119.99439 * 295.71476 * 7 5 4 10 10 N 1.31519 * 120.00179 * 0.02562 * 9 7 5 11 11 Si 1.86803 * 119.99793 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47031 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47149 * 119.99685 * 11 9 7 14 14 H 1.48499 * 109.46974 * 240.00127 * 11 9 7 15 15 C 1.47901 * 110.99732 * 117.39420 * 2 1 3 16 16 H 1.09000 * 110.08398 * 333.59851 * 15 2 1 17 17 C 1.50694 * 109.91880 * 94.80456 * 15 2 1 18 18 C 1.38274 * 119.99061 * 217.59071 * 17 15 2 19 19 C 1.38218 * 120.05344 * 180.02562 * 18 17 15 20 20 C 1.38216 * 120.02715 * 359.97024 * 19 18 17 21 21 C 1.38436 * 119.97572 * 0.02955 * 20 19 18 22 22 F 1.35104 * 120.02854 * 179.97438 * 21 20 19 23 23 C 1.38177 * 119.98852 * 37.86497 * 17 15 2 24 24 H 1.08994 * 109.47110 * 302.60721 * 1 2 3 25 25 H 1.09004 * 109.46830 * 62.61068 * 1 2 3 26 26 H 1.09005 * 109.46476 * 182.60403 * 1 2 3 27 27 H 1.08993 * 110.66753 * 41.28029 * 3 2 1 28 28 H 1.09005 * 110.66329 * 278.15455 * 3 2 1 29 29 H 1.08998 * 110.72472 * 204.22673 * 4 3 2 30 30 H 1.08995 * 110.72672 * 80.93819 * 4 3 2 31 31 H 0.96989 * 119.99713 * 180.02562 * 10 9 7 32 32 H 1.08002 * 119.96830 * 0.03585 * 18 17 15 33 33 H 1.08001 * 119.98656 * 179.97438 * 19 18 17 34 34 H 1.08004 * 120.01333 * 180.02562 * 20 19 18 35 35 H 1.07999 * 120.01652 * 359.97438 * 23 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4492 1.2106 0.5228 5 6 3.2983 0.1054 1.5931 6 1 4.1468 -0.5779 1.5558 7 6 3.1811 0.7182 2.9649 8 1 2.2709 0.5989 3.5337 9 6 4.2362 1.4313 3.4937 10 7 5.3444 1.5771 2.8007 11 14 4.0913 2.1904 5.1944 12 1 2.7530 1.8844 5.7606 13 1 5.1437 1.6284 6.0786 14 1 4.2617 3.6623 5.0956 15 6 1.9990 -0.6353 1.2260 16 1 1.2771 -0.5431 2.0374 17 6 2.2938 -2.0898 0.9642 18 6 2.0437 -3.0329 1.9440 19 6 2.3141 -4.3672 1.7054 20 6 2.8342 -4.7604 0.4867 21 6 3.0850 -3.8172 -0.4950 22 9 3.5939 -4.2003 -1.6865 23 6 2.8191 -2.4798 -0.2528 24 1 -0.3633 0.5538 0.8656 25 1 -0.3633 0.4728 -0.9125 26 1 -0.3632 -1.0267 0.0467 27 1 1.4237 2.0204 0.6728 28 1 2.0041 1.7976 -1.0096 29 1 3.8123 2.1352 0.9716 30 1 4.1116 0.8835 -0.2786 31 1 6.0867 2.0784 3.1729 32 1 1.6367 -2.7266 2.8963 33 1 2.1188 -5.1029 2.4716 34 1 3.0450 -5.8032 0.3004 35 1 3.0182 -1.7426 -1.0166 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260500083.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:30 Heat of formation + Delta-G solvation = -34.798502 kcal Electronic energy + Delta-G solvation = -18325.352190 eV Core-core repulsion = 15429.672900 eV Total energy + Delta-G solvation = -2895.679290 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.81214 -40.74844 -38.81957 -35.11864 -32.84688 -32.23350 -31.37464 -29.14323 -27.18225 -25.46315 -23.83558 -23.13725 -21.76394 -20.87858 -18.61587 -18.06667 -17.16747 -16.98605 -16.72658 -16.49321 -16.16058 -15.84654 -15.04070 -14.63464 -14.46934 -14.11901 -14.00347 -13.94595 -13.31155 -12.92485 -12.88572 -12.58462 -12.55618 -12.41937 -12.22168 -12.07800 -11.88463 -11.69822 -11.34334 -10.86626 -10.47280 -9.72694 -9.49542 -9.33297 -8.13506 -6.25382 0.30084 0.41538 1.39215 1.41865 1.51982 2.41046 2.73674 3.16613 3.20409 3.36046 3.88160 4.04879 4.15853 4.21474 4.31254 4.44664 4.46689 4.50520 4.64342 4.71798 4.78768 4.88696 4.99452 5.06188 5.19641 5.21531 5.29214 5.36557 5.45274 5.57778 5.67398 5.79217 5.84287 5.98620 6.07835 6.28293 6.37833 6.84644 7.42457 8.94462 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021850 B = 0.007368 C = 0.006611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.133652 B = 3799.240636 C = 4234.273950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.523 5.523 3 C 0.048 3.952 4 C -0.098 4.098 5 C 0.053 3.947 6 H -0.002 1.002 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.016 3.984 10 N -0.916 5.916 11 Si 0.951 3.049 12 H -0.265 1.265 13 H -0.282 1.282 14 H -0.281 1.281 15 C 0.113 3.887 16 H 0.052 0.948 17 C -0.039 4.039 18 C -0.137 4.137 19 C -0.085 4.085 20 C -0.161 4.161 21 C 0.073 3.927 22 F -0.151 7.151 23 C -0.139 4.139 24 H 0.025 0.975 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.087 0.913 29 H 0.052 0.948 30 H 0.032 0.968 31 H 0.261 0.739 32 H 0.132 0.868 33 H 0.165 0.835 34 H 0.158 0.842 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.275 -8.139 -3.426 12.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.247 5.247 3 C -0.079 4.079 4 C -0.137 4.137 5 C 0.034 3.966 6 H 0.016 0.984 7 C -0.564 4.564 8 H 0.073 0.927 9 C -0.184 4.184 10 N -0.555 5.555 11 Si 0.777 3.223 12 H -0.189 1.189 13 H -0.208 1.208 14 H -0.207 1.207 15 C 0.005 3.995 16 H 0.070 0.930 17 C -0.040 4.040 18 C -0.156 4.156 19 C -0.103 4.103 20 C -0.179 4.179 21 C 0.054 3.946 22 F -0.130 7.130 23 C -0.158 4.158 24 H 0.043 0.957 25 H 0.101 0.899 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.105 0.895 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.150 0.850 33 H 0.183 0.817 34 H 0.176 0.824 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.948 -8.349 -3.938 12.181 hybrid contribution 0.284 1.138 1.276 1.733 sum -7.664 -7.211 -2.662 10.855 Atomic orbital electron populations 1.22513 0.87125 1.01962 1.01242 1.64605 1.08838 1.15028 1.36248 1.23121 0.95305 0.89309 1.00158 1.22265 0.94467 1.00325 0.96623 1.19386 0.90913 0.92363 0.93931 0.98364 1.21505 1.00164 1.33290 1.01401 0.92738 1.25711 0.94994 0.96779 1.00876 1.70108 1.04891 1.41667 1.38812 0.85604 0.78287 0.78097 0.80294 1.18915 1.20819 1.20709 1.21415 0.97435 0.90269 0.90428 0.93001 1.19802 0.95939 0.95161 0.93077 1.21348 1.01564 0.93420 0.99230 1.21262 0.96698 0.95708 0.96634 1.21353 1.03002 1.00178 0.93395 1.17938 1.00782 0.93606 0.82306 1.91439 1.85151 1.91830 1.44535 1.20921 1.01726 0.94235 0.98920 0.95660 0.89918 0.91324 0.94361 0.89496 0.92928 0.94928 0.93014 0.84962 0.81700 0.82432 0.85820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.40 127.69 1.20 1.79 16 2 N -0.52 -19.20 4.37 -888.43 -3.88 -23.08 16 3 C 0.05 1.86 6.56 86.65 0.57 2.43 16 4 C -0.10 -4.63 6.16 31.80 0.20 -4.44 16 5 C 0.05 2.64 2.50 -10.66 -0.03 2.61 16 6 H 0.00 -0.10 7.68 -2.39 -0.02 -0.12 16 7 C -0.53 -28.06 8.49 25.60 0.22 -27.85 16 8 H 0.05 2.85 7.34 -2.91 -0.02 2.83 16 9 C 0.02 0.85 5.09 84.66 0.43 1.28 16 10 N -0.92 -52.64 12.15 21.45 0.26 -52.38 16 11 Si 0.95 42.70 29.54 68.60 2.03 44.72 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 14 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 15 C 0.11 4.62 2.32 44.31 0.10 4.72 16 16 H 0.05 2.16 6.88 -2.39 -0.02 2.15 16 17 C -0.04 -1.46 4.75 -19.87 -0.09 -1.55 16 18 C -0.14 -4.37 9.68 22.27 0.22 -4.16 16 19 C -0.09 -2.19 10.04 22.26 0.22 -1.96 16 20 C -0.16 -4.29 10.03 22.31 0.22 -4.07 16 21 C 0.07 2.38 7.30 22.38 0.16 2.55 16 22 F -0.15 -4.95 17.27 44.97 0.78 -4.18 16 23 C -0.14 -5.12 9.31 22.31 0.21 -4.92 16 24 H 0.02 0.74 8.01 -2.39 -0.02 0.72 16 25 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 26 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 27 H 0.04 1.48 7.96 -2.39 -0.02 1.46 16 28 H 0.09 2.91 8.14 -2.38 -0.02 2.89 16 29 H 0.05 2.75 6.77 -2.39 -0.02 2.74 16 30 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.26 14.27 8.31 -92.72 -0.77 13.50 16 32 H 0.13 3.96 8.05 -2.91 -0.02 3.93 16 33 H 0.17 2.92 8.06 -2.91 -0.02 2.89 16 34 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 35 H 0.12 4.83 7.67 -2.91 -0.02 4.81 16 Total: -1.00 -60.23 293.63 3.88 -56.35 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 1.07 Total: 12.12 kcal Atomic # 6 Polarization: -37.19 SS G_CDS: 3.63 Total: -33.56 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -3.62 Total: -75.46 kcal Atomic # 9 Polarization: -4.95 SS G_CDS: 0.78 Total: -4.18 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -60.23 3.88 -56.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260500083.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.556 kcal (2) G-P(sol) polarization free energy of solvation -60.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds