Wall clock time and date at job start Mon Mar 30 2020 07:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00107 * 2 1 4 4 H 1.48498 * 109.47407 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46953 * 300.00206 * 3 2 1 6 6 H 1.48503 * 109.46935 * 59.99835 * 3 2 1 7 7 C 1.37878 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00065 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00092 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47111 * 300.00103 * 9 7 2 11 11 N 1.46904 * 109.46982 * 60.00108 * 9 7 2 12 12 C 1.50700 * 109.47241 * 179.97438 * 9 7 2 13 13 C 1.34511 * 125.78607 * 99.99945 * 12 9 7 14 14 C 1.41392 * 106.84247 * 179.79489 * 13 12 9 15 15 C 1.34513 * 106.83529 * 0.37276 * 14 13 12 16 16 C 1.50706 * 125.78886 * 179.89104 * 15 14 13 17 17 C 1.52999 * 109.46957 * 119.71803 * 16 15 14 18 18 C 1.53006 * 109.46626 * 180.02562 * 17 16 15 19 19 C 1.52997 * 109.47127 * 299.99539 * 18 17 16 20 20 C 1.53002 * 109.46817 * 60.00361 * 19 18 17 21 21 C 1.52996 * 109.46972 * 299.99733 * 20 19 18 22 22 O 1.34298 * 125.79406 * 280.02844 * 12 9 7 23 23 H 0.97003 * 119.99712 * 359.97438 * 1 2 3 24 24 H 1.00906 * 110.99640 * 296.04474 * 11 9 7 25 25 H 1.00898 * 111.00332 * 59.99979 * 11 9 7 26 26 H 1.07994 * 126.58403 * 0.02562 * 13 12 9 27 27 H 1.07994 * 126.58253 * 180.23900 * 14 13 12 28 28 H 1.08993 * 109.46700 * 359.71283 * 16 15 14 29 29 H 1.08993 * 109.47839 * 60.00178 * 17 16 15 30 30 H 1.09000 * 109.47160 * 299.99740 * 17 16 15 31 31 H 1.09001 * 109.46801 * 59.99811 * 18 17 16 32 32 H 1.09001 * 109.46998 * 179.97438 * 18 17 16 33 33 H 1.09002 * 109.47153 * 180.02562 * 19 18 17 34 34 H 1.08996 * 109.46952 * 300.00302 * 19 18 17 35 35 H 1.08996 * 109.47407 * 60.00219 * 20 19 18 36 36 H 1.09000 * 109.46986 * 179.97438 * 20 19 18 37 37 H 1.09001 * 109.46993 * 180.02562 * 21 20 19 38 38 H 1.09000 * 109.47380 * 299.99696 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8903 11 7 0.4070 -2.5772 -1.1993 12 6 2.2303 -3.6446 0.0005 13 6 2.5974 -4.3656 1.0751 14 6 3.5234 -5.3334 0.6222 15 6 3.6730 -5.1404 -0.7005 16 6 4.5680 -5.9399 -1.6122 17 6 3.7231 -6.6086 -2.6983 18 6 4.6318 -7.4207 -3.6234 19 6 5.6576 -6.4913 -4.2752 20 6 6.5024 -5.8225 -3.1890 21 6 5.5938 -5.0104 -2.2640 22 8 2.8849 -4.1183 -1.0721 23 1 -0.4850 0.8401 0.0004 24 1 -0.3004 -1.8577 -1.1911 25 1 0.9653 -2.5260 -2.0382 26 1 2.2488 -4.2333 2.0886 27 1 4.0176 -6.0822 1.2234 28 1 5.0868 -6.7039 -1.0333 29 1 3.2044 -5.8446 -3.2772 30 1 2.9926 -7.2711 -2.2340 31 1 5.1502 -8.1849 -3.0442 32 1 4.0299 -7.8976 -4.3970 33 1 6.3047 -7.0698 -4.9346 34 1 5.1391 -5.7272 -4.8543 35 1 7.0209 -6.5866 -2.6099 36 1 7.2335 -5.1607 -3.6534 37 1 6.1957 -4.5336 -1.4904 38 1 5.0754 -4.2462 -2.8431 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260537105.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:54 Heat of formation + Delta-G solvation = -24.359332 kcal Electronic energy + Delta-G solvation = -18354.404584 eV Core-core repulsion = 15582.638275 eV Total energy + Delta-G solvation = -2771.766309 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.75066 -38.29115 -34.76714 -32.36914 -31.82247 -30.96271 -30.71837 -27.63477 -25.75607 -23.19532 -22.51555 -21.38476 -20.89625 -19.65164 -19.03060 -16.70243 -16.24317 -15.24427 -15.00111 -14.55262 -14.23316 -14.09411 -13.96466 -13.72333 -13.07238 -12.85200 -12.39439 -12.15505 -12.01754 -11.79693 -11.43469 -11.37546 -11.18248 -11.09069 -10.96212 -10.82269 -10.50039 -10.14303 -10.07294 -10.01902 -9.98324 -9.04392 -8.73932 -7.52665 -7.18395 -6.15696 -4.33348 2.62279 3.18970 3.27387 3.32460 3.50294 3.78822 4.29703 4.68695 4.81063 4.81288 5.06733 5.17479 5.30004 5.44016 5.49135 5.53450 5.56024 5.65742 5.76936 5.89374 5.95111 6.01086 6.12798 6.13123 6.23841 6.24211 6.39093 6.48040 6.53931 6.64596 6.75896 7.00531 7.33167 7.38538 7.68733 7.93532 8.20336 8.57317 8.83968 9.05234 9.38559 10.81382 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.027665 B = 0.005520 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.877362 B = 5071.065965 C = 5387.967750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.067 3.933 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.279 3.721 10 H 0.068 0.932 11 N -0.850 5.850 12 C 0.070 3.930 13 C -0.254 4.254 14 C -0.205 4.205 15 C -0.046 4.046 16 C 0.006 3.994 17 C -0.115 4.115 18 C -0.117 4.117 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.116 4.116 22 O -0.164 6.164 23 H 0.267 0.733 24 H 0.358 0.642 25 H 0.318 0.682 26 H 0.137 0.863 27 H 0.133 0.867 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.275 -11.531 -5.329 15.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.135 4.135 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.587 4.587 8 H 0.077 0.923 9 C 0.169 3.831 10 H 0.085 0.915 11 N -0.380 5.380 12 C 0.018 3.982 13 C -0.274 4.274 14 C -0.225 4.225 15 C -0.095 4.095 16 C -0.012 4.012 17 C -0.153 4.153 18 C -0.155 4.155 19 C -0.159 4.159 20 C -0.155 4.155 21 C -0.154 4.154 22 O -0.059 6.059 23 H 0.077 0.923 24 H 0.175 0.825 25 H 0.127 0.873 26 H 0.155 0.845 27 H 0.151 0.849 28 H 0.106 0.894 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 8.866 -12.027 -5.343 15.868 hybrid contribution 0.853 1.883 0.262 2.084 sum 9.719 -10.144 -5.081 14.939 Atomic orbital electron populations 1.69744 1.05855 1.27405 1.50208 1.25000 0.94996 0.99429 0.94104 0.86379 0.80136 0.82841 0.77761 1.19677 1.20790 1.20695 1.21818 0.93904 0.90734 1.52246 0.92336 1.17760 0.87130 0.85496 0.92736 0.91460 1.59443 1.18435 1.56078 1.04016 1.23540 0.95047 0.96165 0.83403 1.21341 1.05516 1.00659 0.99849 1.21357 1.03850 1.02984 0.94260 1.22032 0.99542 0.93607 0.94362 1.19594 0.92843 0.94806 0.93975 1.21607 0.97654 0.99501 0.96500 1.21535 0.97413 0.97851 0.98702 1.21561 0.97676 0.98930 0.97717 1.21530 0.97711 0.99188 0.97059 1.21612 0.96905 0.98016 0.98842 1.83956 1.45639 1.39535 1.36816 0.92292 0.82498 0.87319 0.84546 0.84935 0.89364 0.91181 0.91719 0.92136 0.91998 0.92323 0.91823 0.92127 0.92013 0.91728 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.45 11.54 55.43 0.64 -23.81 16 2 C 0.07 1.82 5.38 -17.82 -0.10 1.72 16 3 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.55 -15.04 8.71 -34.44 -0.30 -15.34 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 9 C 0.28 7.20 3.17 -70.02 -0.22 6.98 16 10 H 0.07 1.85 8.13 -51.93 -0.42 1.42 16 11 N -0.85 -20.99 9.18 -6.65 -0.06 -21.05 16 12 C 0.07 1.66 6.08 -35.63 -0.22 1.45 16 13 C -0.25 -5.45 10.80 -39.70 -0.43 -5.88 16 14 C -0.21 -3.84 10.78 -39.70 -0.43 -4.27 16 15 C -0.05 -0.84 5.83 -35.62 -0.21 -1.05 16 16 C 0.01 0.09 2.59 -91.77 -0.24 -0.15 16 17 C -0.12 -1.49 5.19 -26.73 -0.14 -1.63 16 18 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 19 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 20 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 21 C -0.12 -1.55 5.19 -26.73 -0.14 -1.69 16 22 O -0.16 -3.63 10.53 5.72 0.06 -3.57 16 23 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 24 H 0.36 9.22 7.08 -39.29 -0.28 8.94 16 25 H 0.32 7.68 8.88 -39.29 -0.35 7.33 16 26 H 0.14 2.73 8.06 -52.49 -0.42 2.31 16 27 H 0.13 2.07 8.06 -52.49 -0.42 1.64 16 28 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 309.36 15.07 4.66 4.66 Total: -1.00 -28.00 309.36 -8.69 -36.69 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -6.08 Total: 15.03 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: -2.89 Total: -23.95 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.58 Total: -44.86 kcal Atomic # 8 Polarization: -3.63 SS G_CDS: 0.06 Total: -3.57 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.00 -8.69 -36.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260537105.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.331 kcal (2) G-P(sol) polarization free energy of solvation -27.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds