Wall clock time and date at job start Mon Mar 30 2020 07:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00107 * 2 1 4 4 H 1.48498 * 109.47407 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46953 * 300.00206 * 3 2 1 6 6 H 1.48503 * 109.46935 * 59.99835 * 3 2 1 7 7 C 1.37878 * 119.99964 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00065 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00092 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47111 * 300.00103 * 9 7 2 11 11 N 1.46904 * 109.46982 * 60.00108 * 9 7 2 12 12 C 1.50700 * 109.47241 * 179.97438 * 9 7 2 13 13 C 1.34511 * 125.78607 * 99.99945 * 12 9 7 14 14 C 1.41392 * 106.84247 * 179.79489 * 13 12 9 15 15 C 1.34513 * 106.83529 * 0.37276 * 14 13 12 16 16 C 1.50706 * 125.78886 * 179.89104 * 15 14 13 17 17 C 1.52999 * 109.46957 * 119.71803 * 16 15 14 18 18 C 1.53006 * 109.46626 * 180.02562 * 17 16 15 19 19 C 1.52997 * 109.47127 * 299.99539 * 18 17 16 20 20 C 1.53002 * 109.46817 * 60.00361 * 19 18 17 21 21 C 1.52996 * 109.46972 * 299.99733 * 20 19 18 22 22 O 1.34298 * 125.79406 * 280.02844 * 12 9 7 23 23 H 0.97003 * 119.99712 * 359.97438 * 1 2 3 24 24 H 1.00906 * 110.99640 * 296.04474 * 11 9 7 25 25 H 1.00898 * 111.00332 * 59.99979 * 11 9 7 26 26 H 1.07994 * 126.58403 * 0.02562 * 13 12 9 27 27 H 1.07994 * 126.58253 * 180.23900 * 14 13 12 28 28 H 1.08993 * 109.46700 * 359.71283 * 16 15 14 29 29 H 1.08993 * 109.47839 * 60.00178 * 17 16 15 30 30 H 1.09000 * 109.47160 * 299.99740 * 17 16 15 31 31 H 1.09001 * 109.46801 * 59.99811 * 18 17 16 32 32 H 1.09001 * 109.46998 * 179.97438 * 18 17 16 33 33 H 1.09002 * 109.47153 * 180.02562 * 19 18 17 34 34 H 1.08996 * 109.46952 * 300.00302 * 19 18 17 35 35 H 1.08996 * 109.47407 * 60.00219 * 20 19 18 36 36 H 1.09000 * 109.46986 * 179.97438 * 20 19 18 37 37 H 1.09001 * 109.46993 * 180.02562 * 21 20 19 38 38 H 1.09000 * 109.47380 * 299.99696 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8903 11 7 0.4070 -2.5772 -1.1993 12 6 2.2303 -3.6446 0.0005 13 6 2.5974 -4.3656 1.0751 14 6 3.5234 -5.3334 0.6222 15 6 3.6730 -5.1404 -0.7005 16 6 4.5680 -5.9399 -1.6122 17 6 3.7231 -6.6086 -2.6983 18 6 4.6318 -7.4207 -3.6234 19 6 5.6576 -6.4913 -4.2752 20 6 6.5024 -5.8225 -3.1890 21 6 5.5938 -5.0104 -2.2640 22 8 2.8849 -4.1183 -1.0721 23 1 -0.4850 0.8401 0.0004 24 1 -0.3004 -1.8577 -1.1911 25 1 0.9653 -2.5260 -2.0382 26 1 2.2488 -4.2333 2.0886 27 1 4.0176 -6.0822 1.2234 28 1 5.0868 -6.7039 -1.0333 29 1 3.2044 -5.8446 -3.2772 30 1 2.9926 -7.2711 -2.2340 31 1 5.1502 -8.1849 -3.0442 32 1 4.0299 -7.8976 -4.3970 33 1 6.3047 -7.0698 -4.9346 34 1 5.1391 -5.7272 -4.8543 35 1 7.0209 -6.5866 -2.6099 36 1 7.2335 -5.1607 -3.6534 37 1 6.1957 -4.5336 -1.4904 38 1 5.0754 -4.2462 -2.8431 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260537105.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:54 Heat of formation + Delta-G solvation = -40.306498 kcal Electronic energy + Delta-G solvation = -18355.096105 eV Core-core repulsion = 15582.638275 eV Total energy + Delta-G solvation = -2772.457830 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.37258 -39.28730 -36.76156 -33.86148 -33.60205 -32.50906 -31.64631 -29.27115 -27.69414 -24.72441 -23.44216 -22.81956 -22.51229 -20.88714 -20.39814 -18.76565 -17.78892 -16.83098 -16.65234 -16.17732 -15.68510 -15.25752 -15.05503 -15.02737 -14.79060 -14.35273 -13.64688 -13.47489 -13.45496 -13.28790 -13.07542 -12.91073 -12.88516 -12.65538 -12.22170 -12.03236 -12.02084 -11.90376 -11.38439 -11.06658 -11.05147 -10.83310 -10.63045 -9.42452 -8.99175 -8.20661 -6.48888 1.01799 1.33653 1.36236 1.48065 1.84851 2.22299 2.34393 2.96185 3.62003 3.81673 3.88180 4.12995 4.21025 4.30873 4.36537 4.38680 4.51633 4.56593 4.61080 4.63348 4.72693 4.91277 5.01752 5.02524 5.15539 5.17719 5.26784 5.27545 5.28324 5.39764 5.43530 5.48550 5.54469 5.60715 5.77598 5.92389 6.44595 6.53166 6.76727 6.98049 7.26935 8.73569 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.027665 B = 0.005520 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.877362 B = 5071.065965 C = 5387.967750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.027 3.973 3 Si 0.966 3.034 4 H -0.276 1.276 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.568 4.568 8 H 0.042 0.958 9 C 0.282 3.718 10 H 0.041 0.959 11 N -0.841 5.841 12 C 0.026 3.974 13 C -0.253 4.253 14 C -0.212 4.212 15 C -0.038 4.038 16 C 0.006 3.994 17 C -0.113 4.113 18 C -0.111 4.111 19 C -0.122 4.122 20 C -0.111 4.111 21 C -0.116 4.116 22 O -0.182 6.182 23 H 0.272 0.728 24 H 0.351 0.649 25 H 0.319 0.681 26 H 0.144 0.856 27 H 0.170 0.830 28 H 0.118 0.882 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.244 -12.849 -5.776 18.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.174 4.174 3 Si 0.790 3.210 4 H -0.201 1.201 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.607 4.607 8 H 0.061 0.939 9 C 0.172 3.828 10 H 0.059 0.941 11 N -0.370 5.370 12 C -0.025 4.025 13 C -0.273 4.273 14 C -0.231 4.231 15 C -0.088 4.088 16 C -0.012 4.012 17 C -0.151 4.151 18 C -0.148 4.148 19 C -0.159 4.159 20 C -0.148 4.148 21 C -0.153 4.153 22 O -0.079 6.079 23 H 0.082 0.918 24 H 0.167 0.833 25 H 0.128 0.872 26 H 0.162 0.838 27 H 0.188 0.812 28 H 0.136 0.864 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.828 -13.355 -5.790 18.142 hybrid contribution 0.242 2.234 0.401 2.282 sum 11.070 -11.121 -5.389 16.591 Atomic orbital electron populations 1.69821 1.06852 1.28463 1.49930 1.25729 0.95866 1.02378 0.93410 0.85398 0.78495 0.78860 0.78217 1.20072 1.19834 1.19812 1.21929 0.93213 0.92177 1.53421 0.93947 1.17470 0.87242 0.86308 0.91800 0.94145 1.59413 1.18140 1.55500 1.03931 1.23174 0.97057 0.97515 0.84767 1.21654 1.05352 1.00621 0.99655 1.21729 1.03522 1.03227 0.94594 1.23050 0.98162 0.92009 0.95541 1.19879 0.92392 0.94885 0.94016 1.21580 0.98018 0.99067 0.96451 1.21514 0.97088 0.97732 0.98501 1.21582 0.97799 0.98798 0.97748 1.21508 0.97220 0.99373 0.96724 1.21590 0.96965 0.97788 0.98982 1.83918 1.46372 1.40838 1.36778 0.91809 0.83346 0.87162 0.83845 0.81242 0.86409 0.93730 0.91915 0.90189 0.91007 0.90030 0.93178 0.90163 0.91239 0.92324 0.93903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.61 11.54 21.45 0.25 -50.37 16 2 C 0.03 1.49 5.38 84.65 0.46 1.94 16 3 Si 0.97 43.44 29.54 68.60 2.03 45.46 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.57 -32.23 8.71 25.60 0.22 -32.01 16 8 H 0.04 2.48 7.74 -2.91 -0.02 2.46 16 9 C 0.28 15.20 3.17 43.42 0.14 15.33 16 10 H 0.04 2.35 8.13 -2.39 -0.02 2.33 16 11 N -0.84 -43.20 9.18 -174.95 -1.61 -44.80 16 12 C 0.03 1.27 6.08 24.83 0.15 1.42 16 13 C -0.25 -10.95 10.80 22.19 0.24 -10.71 16 14 C -0.21 -7.64 10.78 22.19 0.24 -7.40 16 15 C -0.04 -1.38 5.83 24.83 0.14 -1.24 16 16 C 0.01 0.17 2.59 -11.54 -0.03 0.14 16 17 C -0.11 -2.77 5.19 30.60 0.16 -2.62 16 18 C -0.11 -1.92 5.92 30.60 0.18 -1.73 16 19 C -0.12 -2.06 5.92 30.59 0.18 -1.88 16 20 C -0.11 -1.98 5.92 30.59 0.18 -1.80 16 21 C -0.12 -2.94 5.19 30.59 0.16 -2.78 16 22 O -0.18 -8.30 10.53 -2.45 -0.03 -8.33 16 23 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 24 H 0.35 18.70 7.08 -89.69 -0.63 18.07 16 25 H 0.32 16.06 8.88 -89.70 -0.80 15.26 16 26 H 0.14 5.81 8.06 -2.91 -0.02 5.79 16 27 H 0.17 4.73 8.06 -2.91 -0.02 4.70 16 28 H 0.12 2.45 8.10 -2.39 -0.02 2.43 16 29 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -61.56 309.36 2.68 -58.88 By element: Atomic # 1 Polarization: 42.86 SS G_CDS: -0.38 Total: 42.48 kcal Atomic # 6 Polarization: -45.75 SS G_CDS: 2.42 Total: -43.33 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -1.36 Total: -95.17 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.03 Total: -8.33 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -61.56 2.68 -58.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260537105.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.577 kcal (2) G-P(sol) polarization free energy of solvation -61.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds