Wall clock time and date at job start Mon Mar 30 2020 07:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99557 * 2 1 4 4 H 1.48493 * 109.47112 * 269.99975 * 3 2 1 5 5 H 1.48498 * 109.47131 * 30.00278 * 3 2 1 6 6 H 1.48501 * 109.46705 * 149.99812 * 3 2 1 7 7 C 1.37872 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99509 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00242 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.46532 * 60.00714 * 9 7 2 11 11 N 1.46897 * 109.47625 * 300.00600 * 9 7 2 12 12 C 1.50698 * 109.47196 * 179.97438 * 9 7 2 13 13 C 1.34516 * 125.79047 * 260.00231 * 12 9 7 14 14 C 1.41383 * 106.84064 * 180.02562 * 13 12 9 15 15 C 1.34520 * 106.83963 * 0.02562 * 14 13 12 16 16 C 1.50706 * 125.78966 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.46957 * 240.00509 * 16 15 14 18 18 C 1.53006 * 109.46626 * 180.02562 * 17 16 15 19 19 C 1.52997 * 109.47164 * 59.99702 * 18 17 16 20 20 C 1.53002 * 109.47415 * 300.00027 * 19 18 17 21 21 C 1.52996 * 109.46972 * 59.99860 * 20 19 18 22 22 O 1.34304 * 108.42075 * 0.26376 * 15 14 13 23 23 H 0.96998 * 120.00004 * 359.97438 * 1 2 3 24 24 H 1.00901 * 110.99537 * 300.00278 * 11 9 7 25 25 H 1.00898 * 111.00320 * 63.94843 * 11 9 7 26 26 H 1.07996 * 126.58424 * 0.06142 * 13 12 9 27 27 H 1.07994 * 126.58199 * 179.97438 * 14 13 12 28 28 H 1.09000 * 109.46974 * 0.02562 * 16 15 14 29 29 H 1.08993 * 109.47839 * 60.00178 * 17 16 15 30 30 H 1.09000 * 109.47160 * 299.99740 * 17 16 15 31 31 H 1.09001 * 109.46998 * 179.97438 * 18 17 16 32 32 H 1.09000 * 109.47050 * 299.99699 * 18 17 16 33 33 H 1.09000 * 109.47140 * 60.00051 * 19 18 17 34 34 H 1.09001 * 109.47230 * 179.97438 * 19 18 17 35 35 H 1.08992 * 109.46974 * 180.02562 * 20 19 18 36 36 H 1.08996 * 109.46550 * 300.00288 * 20 19 18 37 37 H 1.09000 * 109.47054 * 60.00300 * 21 20 19 38 38 H 1.09001 * 109.46997 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6243 -2.5567 -0.8904 11 7 0.4070 -2.5773 1.1991 12 6 2.2305 -3.6445 -0.0018 13 6 2.5969 -4.3650 -1.0770 14 6 3.5264 -5.3302 -0.6259 15 6 3.6720 -5.1420 0.6981 16 6 4.5666 -5.9428 1.6090 17 6 3.7212 -6.6122 2.6944 18 6 4.6297 -7.4247 3.6196 19 6 5.6550 -6.4954 4.2722 20 6 6.5003 -5.8259 3.1868 21 6 5.5919 -5.0135 2.2617 22 8 2.8800 -4.1237 1.0717 23 1 -0.4850 0.8400 0.0004 24 1 0.9652 -2.5260 2.0380 25 1 -0.3004 -1.8579 1.1910 26 1 2.2485 -4.2316 -2.0904 27 1 4.0235 -6.0759 -1.2284 28 1 5.0853 -6.7063 1.0294 29 1 2.9905 -7.2739 2.2295 30 1 3.2028 -5.8484 3.2740 31 1 4.0275 -7.9013 4.3931 32 1 5.1484 -8.1885 3.0403 33 1 5.1362 -5.7316 4.8515 34 1 6.3019 -7.0741 4.9317 35 1 7.2310 -5.1643 3.6518 36 1 7.0190 -6.5897 2.6076 37 1 5.0731 -4.2497 2.8410 38 1 6.1940 -4.5369 1.4882 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260537129.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:59 Heat of formation + Delta-G solvation = -24.361970 kcal Electronic energy + Delta-G solvation = -18354.305089 eV Core-core repulsion = 15582.538665 eV Total energy + Delta-G solvation = -2771.766423 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.74987 -38.29092 -34.76611 -32.36908 -31.82199 -30.96219 -30.71821 -27.63414 -25.75521 -23.19472 -22.51570 -21.38398 -20.89516 -19.65047 -19.03029 -16.70074 -16.24162 -15.24360 -14.99972 -14.55451 -14.23301 -14.09417 -13.96471 -13.72445 -13.07269 -12.84512 -12.39417 -12.15483 -12.01751 -11.79625 -11.43600 -11.37415 -11.18802 -11.09006 -10.94755 -10.81676 -10.49960 -10.15213 -10.08040 -10.03639 -9.97924 -9.04405 -8.72877 -7.52652 -7.18477 -6.15484 -4.33241 2.62250 3.20450 3.27205 3.31104 3.50263 3.78850 4.29730 4.68748 4.81135 4.81297 5.06882 5.17507 5.30020 5.44044 5.49144 5.53518 5.56078 5.65763 5.76931 5.89400 5.95069 6.01104 6.12825 6.13143 6.23860 6.24248 6.39130 6.48102 6.53985 6.64620 6.75837 7.00505 7.33271 7.38528 7.68655 7.93665 8.20269 8.57311 8.83882 9.05303 9.38617 10.81600 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.027673 B = 0.005519 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.573141 B = 5072.335072 C = 5388.207165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.068 3.932 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.279 3.721 10 H 0.068 0.932 11 N -0.850 5.850 12 C 0.070 3.930 13 C -0.254 4.254 14 C -0.205 4.205 15 C -0.046 4.046 16 C 0.006 3.994 17 C -0.115 4.115 18 C -0.117 4.117 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.116 4.116 22 O -0.164 6.164 23 H 0.268 0.732 24 H 0.318 0.682 25 H 0.358 0.642 26 H 0.137 0.863 27 H 0.133 0.867 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.266 -11.525 5.321 15.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.135 4.135 3 Si 0.729 3.271 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.588 4.588 8 H 0.076 0.924 9 C 0.169 3.831 10 H 0.085 0.915 11 N -0.380 5.380 12 C 0.018 3.982 13 C -0.274 4.274 14 C -0.225 4.225 15 C -0.096 4.096 16 C -0.012 4.012 17 C -0.153 4.153 18 C -0.155 4.155 19 C -0.159 4.159 20 C -0.155 4.155 21 C -0.154 4.154 22 O -0.059 6.059 23 H 0.078 0.922 24 H 0.127 0.873 25 H 0.175 0.825 26 H 0.155 0.845 27 H 0.151 0.849 28 H 0.106 0.894 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.850 -12.021 5.340 15.854 hybrid contribution 0.867 1.881 -0.272 2.089 sum 9.717 -10.141 5.068 14.931 Atomic orbital electron populations 1.69735 1.05852 1.27517 1.50116 1.24997 0.94997 0.99414 0.94091 0.86427 0.79797 0.82508 0.78354 1.20367 1.20988 1.19813 1.21777 0.93867 0.90748 1.52383 0.92391 1.17751 0.87123 0.85480 0.92734 0.91479 1.59442 1.18426 1.56075 1.04020 1.23546 0.95136 0.96081 0.83397 1.21341 1.05489 1.00662 0.99871 1.21356 1.03777 1.03061 0.94257 1.22036 0.99411 0.93797 0.94308 1.19597 0.92848 0.94791 0.93984 1.21606 0.97653 0.99500 0.96504 1.21535 0.97414 0.97854 0.98694 1.21562 0.97678 0.98928 0.97718 1.21529 0.97712 0.99183 0.97063 1.21614 0.96908 0.98019 0.98832 1.83959 1.45656 1.39634 1.36693 0.92235 0.87317 0.82499 0.84546 0.84937 0.89359 0.91712 0.91185 0.91997 0.92132 0.91825 0.92324 0.92013 0.92129 0.91199 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.45 11.54 55.43 0.64 -23.81 16 2 C 0.07 1.83 5.38 -17.82 -0.10 1.73 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.55 -15.06 8.71 -34.44 -0.30 -15.36 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.28 7.21 3.17 -70.02 -0.22 6.99 16 10 H 0.07 1.84 8.13 -51.93 -0.42 1.42 16 11 N -0.85 -20.99 9.18 -6.65 -0.06 -21.05 16 12 C 0.07 1.66 6.08 -35.63 -0.22 1.44 16 13 C -0.25 -5.45 10.80 -39.70 -0.43 -5.88 16 14 C -0.21 -3.84 10.78 -39.70 -0.43 -4.27 16 15 C -0.05 -0.85 5.83 -35.62 -0.21 -1.05 16 16 C 0.01 0.09 2.59 -91.77 -0.24 -0.15 16 17 C -0.12 -1.49 5.19 -26.73 -0.14 -1.63 16 18 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 19 C -0.12 -1.20 5.92 -26.73 -0.16 -1.36 16 20 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 21 C -0.12 -1.55 5.18 -26.73 -0.14 -1.69 16 22 O -0.16 -3.63 10.53 5.70 0.06 -3.57 16 23 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 24 H 0.32 7.68 8.88 -39.29 -0.35 7.33 16 25 H 0.36 9.22 7.08 -39.29 -0.28 8.94 16 26 H 0.14 2.73 8.06 -52.49 -0.42 2.31 16 27 H 0.13 2.07 8.06 -52.49 -0.42 1.64 16 28 H 0.09 1.09 8.10 -51.93 -0.42 0.67 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 309.36 15.07 4.66 4.66 Total: -1.00 -27.97 309.36 -8.69 -36.66 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -6.08 Total: 15.07 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -2.89 Total: -23.96 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.58 Total: -44.87 kcal Atomic # 8 Polarization: -3.63 SS G_CDS: 0.06 Total: -3.57 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.97 -8.69 -36.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260537129.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.303 kcal (2) G-P(sol) polarization free energy of solvation -27.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds