Wall clock time and date at job start Mon Mar 30 2020 07:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99557 * 2 1 4 4 H 1.48493 * 109.47112 * 269.99975 * 3 2 1 5 5 H 1.48498 * 109.47131 * 30.00278 * 3 2 1 6 6 H 1.48501 * 109.46705 * 149.99812 * 3 2 1 7 7 C 1.37872 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99509 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00242 * 359.97438 * 7 2 1 10 10 H 1.09006 * 109.46532 * 60.00714 * 9 7 2 11 11 N 1.46897 * 109.47625 * 300.00600 * 9 7 2 12 12 C 1.50698 * 109.47196 * 179.97438 * 9 7 2 13 13 C 1.34516 * 125.79047 * 260.00231 * 12 9 7 14 14 C 1.41383 * 106.84064 * 180.02562 * 13 12 9 15 15 C 1.34520 * 106.83963 * 0.02562 * 14 13 12 16 16 C 1.50706 * 125.78966 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.46957 * 240.00509 * 16 15 14 18 18 C 1.53006 * 109.46626 * 180.02562 * 17 16 15 19 19 C 1.52997 * 109.47164 * 59.99702 * 18 17 16 20 20 C 1.53002 * 109.47415 * 300.00027 * 19 18 17 21 21 C 1.52996 * 109.46972 * 59.99860 * 20 19 18 22 22 O 1.34304 * 108.42075 * 0.26376 * 15 14 13 23 23 H 0.96998 * 120.00004 * 359.97438 * 1 2 3 24 24 H 1.00901 * 110.99537 * 300.00278 * 11 9 7 25 25 H 1.00898 * 111.00320 * 63.94843 * 11 9 7 26 26 H 1.07996 * 126.58424 * 0.06142 * 13 12 9 27 27 H 1.07994 * 126.58199 * 179.97438 * 14 13 12 28 28 H 1.09000 * 109.46974 * 0.02562 * 16 15 14 29 29 H 1.08993 * 109.47839 * 60.00178 * 17 16 15 30 30 H 1.09000 * 109.47160 * 299.99740 * 17 16 15 31 31 H 1.09001 * 109.46998 * 179.97438 * 18 17 16 32 32 H 1.09000 * 109.47050 * 299.99699 * 18 17 16 33 33 H 1.09000 * 109.47140 * 60.00051 * 19 18 17 34 34 H 1.09001 * 109.47230 * 179.97438 * 19 18 17 35 35 H 1.08992 * 109.46974 * 180.02562 * 20 19 18 36 36 H 1.08996 * 109.46550 * 300.00288 * 20 19 18 37 37 H 1.09000 * 109.47054 * 60.00300 * 21 20 19 38 38 H 1.09001 * 109.46997 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6243 -2.5567 -0.8904 11 7 0.4070 -2.5773 1.1991 12 6 2.2305 -3.6445 -0.0018 13 6 2.5969 -4.3650 -1.0770 14 6 3.5264 -5.3302 -0.6259 15 6 3.6720 -5.1420 0.6981 16 6 4.5666 -5.9428 1.6090 17 6 3.7212 -6.6122 2.6944 18 6 4.6297 -7.4247 3.6196 19 6 5.6550 -6.4954 4.2722 20 6 6.5003 -5.8259 3.1868 21 6 5.5919 -5.0135 2.2617 22 8 2.8800 -4.1237 1.0717 23 1 -0.4850 0.8400 0.0004 24 1 0.9652 -2.5260 2.0380 25 1 -0.3004 -1.8579 1.1910 26 1 2.2485 -4.2316 -2.0904 27 1 4.0235 -6.0759 -1.2284 28 1 5.0853 -6.7063 1.0294 29 1 2.9905 -7.2739 2.2295 30 1 3.2028 -5.8484 3.2740 31 1 4.0275 -7.9013 4.3931 32 1 5.1484 -8.1885 3.0403 33 1 5.1362 -5.7316 4.8515 34 1 6.3019 -7.0741 4.9317 35 1 7.2310 -5.1643 3.6518 36 1 7.0190 -6.5897 2.6076 37 1 5.0731 -4.2497 2.8410 38 1 6.1940 -4.5369 1.4882 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260537129.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:58 Heat of formation + Delta-G solvation = -40.285721 kcal Electronic energy + Delta-G solvation = -18354.995594 eV Core-core repulsion = 15582.538665 eV Total energy + Delta-G solvation = -2772.456929 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.37183 -39.28763 -36.76048 -33.86155 -33.60072 -32.50952 -31.64675 -29.27085 -27.69288 -24.72394 -23.44294 -22.81889 -22.51129 -20.88665 -20.39773 -18.76290 -17.78735 -16.82898 -16.65330 -16.17737 -15.68587 -15.25935 -15.05573 -15.02769 -14.78397 -14.35298 -13.64575 -13.47710 -13.45569 -13.29160 -13.07577 -12.89483 -12.88190 -12.65205 -12.22321 -12.05835 -12.02099 -11.89941 -11.38454 -11.06634 -11.05224 -10.82545 -10.63028 -9.42552 -8.99097 -8.20474 -6.48772 1.01764 1.34994 1.36279 1.46936 1.84876 2.22300 2.34504 2.96425 3.62015 3.81699 3.88139 4.12965 4.20980 4.30860 4.36484 4.38644 4.51578 4.56627 4.61084 4.63354 4.72671 4.91294 5.01781 5.02490 5.15489 5.17686 5.26717 5.27496 5.28295 5.39735 5.43542 5.48565 5.54359 5.60682 5.77643 5.92479 6.44488 6.53169 6.76743 6.98056 7.26988 8.73636 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.027673 B = 0.005519 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.573141 B = 5072.335072 C = 5388.207165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.028 3.972 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.569 4.569 8 H 0.042 0.958 9 C 0.282 3.718 10 H 0.041 0.959 11 N -0.841 5.841 12 C 0.026 3.974 13 C -0.253 4.253 14 C -0.212 4.212 15 C -0.038 4.038 16 C 0.006 3.994 17 C -0.114 4.114 18 C -0.111 4.111 19 C -0.122 4.122 20 C -0.111 4.111 21 C -0.116 4.116 22 O -0.182 6.182 23 H 0.273 0.727 24 H 0.319 0.681 25 H 0.351 0.649 26 H 0.144 0.856 27 H 0.170 0.830 28 H 0.118 0.882 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.042 0.958 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.258 -12.852 5.744 18.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.174 4.174 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.608 4.608 8 H 0.061 0.939 9 C 0.172 3.828 10 H 0.058 0.942 11 N -0.370 5.370 12 C -0.025 4.025 13 C -0.273 4.273 14 C -0.231 4.231 15 C -0.088 4.088 16 C -0.012 4.012 17 C -0.151 4.151 18 C -0.148 4.148 19 C -0.159 4.159 20 C -0.148 4.148 21 C -0.153 4.153 22 O -0.079 6.079 23 H 0.082 0.918 24 H 0.128 0.872 25 H 0.167 0.833 26 H 0.162 0.838 27 H 0.188 0.812 28 H 0.136 0.864 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.836 -13.359 5.762 18.140 hybrid contribution 0.248 2.232 -0.403 2.282 sum 11.085 -11.126 5.359 16.595 Atomic orbital electron populations 1.69815 1.06853 1.28532 1.49853 1.25729 0.95867 1.02370 0.93398 0.85450 0.78412 0.78615 0.78532 1.19716 1.19891 1.20044 1.21902 0.93228 0.92182 1.53529 0.93918 1.17463 0.87237 0.86302 0.91792 0.94173 1.59412 1.18132 1.55499 1.03935 1.23179 0.97155 0.97430 0.84758 1.21653 1.05330 1.00613 0.99672 1.21728 1.03446 1.03297 0.94593 1.23053 0.98030 0.92195 0.95492 1.19883 0.92395 0.94868 0.94026 1.21580 0.98018 0.99066 0.96457 1.21514 0.97090 0.97735 0.98492 1.21584 0.97802 0.98796 0.97751 1.21507 0.97222 0.99368 0.96729 1.21592 0.96968 0.97789 0.98975 1.83921 1.46404 1.40925 1.36657 0.91803 0.87165 0.83344 0.83847 0.81241 0.86395 0.91909 0.93744 0.91009 0.90179 0.93190 0.90029 0.91244 0.90155 0.93919 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.64 11.54 21.45 0.25 -50.39 16 2 C 0.03 1.50 5.38 84.65 0.46 1.96 16 3 Si 0.97 43.41 29.54 68.60 2.03 45.44 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.57 -32.28 8.71 25.60 0.22 -32.06 16 8 H 0.04 2.49 7.74 -2.91 -0.02 2.47 16 9 C 0.28 15.21 3.17 43.42 0.14 15.35 16 10 H 0.04 2.34 8.13 -2.38 -0.02 2.32 16 11 N -0.84 -43.21 9.18 -174.96 -1.61 -44.82 16 12 C 0.03 1.27 6.08 24.83 0.15 1.42 16 13 C -0.25 -10.94 10.80 22.19 0.24 -10.70 16 14 C -0.21 -7.63 10.78 22.19 0.24 -7.39 16 15 C -0.04 -1.39 5.83 24.84 0.14 -1.24 16 16 C 0.01 0.17 2.59 -11.54 -0.03 0.14 16 17 C -0.11 -2.78 5.19 30.60 0.16 -2.62 16 18 C -0.11 -1.92 5.92 30.60 0.18 -1.73 16 19 C -0.12 -2.07 5.92 30.59 0.18 -1.88 16 20 C -0.11 -1.99 5.92 30.59 0.18 -1.80 16 21 C -0.12 -2.94 5.18 30.59 0.16 -2.78 16 22 O -0.18 -8.30 10.53 -2.51 -0.03 -8.33 16 23 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 24 H 0.32 16.07 8.88 -89.69 -0.80 15.27 16 25 H 0.35 18.71 7.08 -89.70 -0.63 18.07 16 26 H 0.14 5.81 8.06 -2.91 -0.02 5.79 16 27 H 0.17 4.72 8.06 -2.91 -0.02 4.70 16 28 H 0.12 2.45 8.10 -2.39 -0.02 2.43 16 29 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -61.51 309.36 2.68 -58.83 By element: Atomic # 1 Polarization: 42.99 SS G_CDS: -0.38 Total: 42.61 kcal Atomic # 6 Polarization: -45.77 SS G_CDS: 2.42 Total: -43.34 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -1.36 Total: -95.20 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.03 Total: -8.33 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -61.51 2.68 -58.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260537129.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.547 kcal (2) G-P(sol) polarization free energy of solvation -61.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds