Wall clock time and date at job start Mon Mar 30 2020 06:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47303 * 2 1 4 4 N 1.46897 * 109.47072 * 119.99960 * 2 1 3 5 5 C 1.47913 * 111.00163 * 300.16821 * 4 2 1 6 6 C 1.54601 * 102.62098 * 149.19196 * 5 4 2 7 7 H 1.09000 * 110.88885 * 216.10070 * 6 5 4 8 8 C 1.50699 * 110.74163 * 92.85132 * 6 5 4 9 9 H 1.07995 * 119.99849 * 271.76401 * 8 6 5 10 10 C 1.37881 * 119.99878 * 91.75701 * 8 6 5 11 11 N 1.31511 * 119.99835 * 184.05400 * 10 8 6 12 12 Si 1.86793 * 120.00059 * 4.05663 * 10 8 6 13 13 H 1.48507 * 109.47245 * 93.57985 * 12 10 8 14 14 H 1.48495 * 109.47289 * 213.57960 * 12 10 8 15 15 H 1.48499 * 109.47227 * 333.58157 * 12 10 8 16 16 C 1.51569 * 102.84518 * 334.50922 * 6 5 4 17 17 C 1.38968 * 107.96289 * 15.76801 * 16 6 5 18 18 C 1.39384 * 119.10828 * 180.70059 * 17 16 6 19 19 C 1.37967 * 120.24814 * 359.75476 * 18 17 16 20 20 C 1.38224 * 120.28827 * 359.97438 * 19 18 17 21 21 C 1.38086 * 131.56604 * 196.42743 * 16 6 5 22 22 F 1.35101 * 119.98796 * 359.27881 * 21 16 6 23 23 H 1.09005 * 109.46954 * 306.86014 * 1 2 3 24 24 H 1.08997 * 109.47407 * 66.85829 * 1 2 3 25 25 H 1.09006 * 109.47337 * 186.86033 * 1 2 3 26 26 H 1.09000 * 109.47168 * 240.00140 * 2 1 3 27 27 H 1.08993 * 109.47344 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46995 * 300.00705 * 3 2 1 29 29 H 1.09000 * 109.46894 * 59.99972 * 3 2 1 30 30 H 1.08996 * 110.78082 * 30.90582 * 5 4 2 31 31 H 1.09001 * 110.94180 * 267.54520 * 5 4 2 32 32 H 0.97001 * 119.99982 * 179.97438 * 11 10 8 33 33 H 1.07999 * 119.87650 * 179.72598 * 18 17 16 34 34 H 1.07994 * 119.85605 * 179.97438 * 19 18 17 35 35 H 1.08003 * 120.06789 * 180.14052 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.5421 -0.0241 2.4295 6 6 1.4264 -1.1982 3.4287 7 1 0.5710 -1.0624 4.0905 8 6 2.6967 -1.3478 4.2257 9 1 3.5006 -1.9632 3.8498 10 6 2.8325 -0.6988 5.4346 11 7 3.9696 -0.7645 6.0920 12 14 1.4014 0.2734 6.1387 13 1 0.6206 -0.5915 7.0594 14 1 1.9202 1.4483 6.8841 15 1 0.5255 0.7364 5.0325 16 6 1.2183 -2.3940 2.5209 17 6 1.5727 -2.0193 1.2305 18 6 1.4552 -2.9485 0.1982 19 6 0.9975 -4.2235 0.4596 20 6 0.6524 -4.5901 1.7469 21 6 0.7584 -3.6704 2.7781 22 9 0.4165 -4.0242 4.0363 23 1 -0.3633 0.6165 0.8223 24 1 -0.3634 0.4039 -0.9449 25 1 -0.3634 -1.0204 0.1228 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 0.5700 0.4406 2.2646 31 1 2.2663 0.7115 2.7794 32 1 4.0653 -0.3076 6.9423 33 1 1.7229 -2.6692 -0.8101 34 1 0.9085 -4.9383 -0.3450 35 1 0.2967 -5.5899 1.9479 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260542180.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:16 Heat of formation + Delta-G solvation = -28.163787 kcal Electronic energy + Delta-G solvation = -18758.297220 eV Core-core repulsion = 15862.905633 eV Total energy + Delta-G solvation = -2895.391588 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.71122 -41.82380 -37.98446 -35.90787 -34.08942 -31.91696 -30.07241 -29.71389 -28.02587 -26.64702 -23.76025 -23.26337 -22.05676 -20.54139 -19.16570 -18.10231 -17.43719 -16.91607 -16.60651 -16.42415 -16.13511 -15.67483 -15.34067 -14.88586 -14.66534 -14.16987 -13.94610 -13.77602 -13.37751 -13.04737 -13.01849 -12.87369 -12.70728 -12.36044 -12.27391 -12.12396 -11.83746 -11.70950 -11.66094 -11.51358 -10.79688 -10.67859 -9.45554 -8.56353 -8.33407 -6.37685 0.34680 0.45634 1.29007 1.31494 1.41750 2.29411 2.66184 2.90259 3.00032 3.50822 3.74246 3.90302 4.08057 4.12670 4.21493 4.28254 4.39923 4.43604 4.51032 4.63835 4.73235 4.76088 4.90901 4.91687 5.01411 5.09431 5.25377 5.30949 5.35684 5.37415 5.46724 5.50021 5.54016 5.84664 6.13033 6.25980 6.42848 6.65393 7.25164 8.83686 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017536 B = 0.011183 C = 0.007857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.339345 B = 2503.088328 C = 3562.628292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.065 3.935 3 C -0.143 4.143 4 N -0.475 5.475 5 C 0.056 3.944 6 C 0.045 3.955 7 H 0.040 0.960 8 C -0.494 4.494 9 H 0.021 0.979 10 C 0.015 3.985 11 N -0.945 5.945 12 Si 0.938 3.062 13 H -0.274 1.274 14 H -0.277 1.277 15 H -0.237 1.237 16 C -0.184 4.184 17 C 0.122 3.878 18 C -0.154 4.154 19 C -0.064 4.064 20 C -0.188 4.188 21 C 0.099 3.901 22 F -0.159 7.159 23 H 0.050 0.950 24 H 0.091 0.909 25 H 0.051 0.949 26 H 0.102 0.898 27 H 0.054 0.946 28 H 0.090 0.910 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.268 0.732 33 H 0.152 0.848 34 H 0.176 0.824 35 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.029 -0.019 -15.600 18.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.041 4.041 3 C -0.201 4.201 4 N -0.188 5.188 5 C -0.070 4.070 6 C 0.026 3.974 7 H 0.058 0.942 8 C -0.532 4.532 9 H 0.039 0.961 10 C -0.182 4.182 11 N -0.585 5.585 12 Si 0.761 3.239 13 H -0.200 1.200 14 H -0.202 1.202 15 H -0.160 1.160 16 C -0.188 4.188 17 C 0.023 3.977 18 C -0.175 4.175 19 C -0.082 4.082 20 C -0.207 4.207 21 C 0.079 3.921 22 F -0.138 7.138 23 H 0.069 0.931 24 H 0.110 0.890 25 H 0.070 0.930 26 H 0.120 0.880 27 H 0.073 0.927 28 H 0.109 0.891 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.170 0.830 34 H 0.194 0.806 35 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.358 0.180 -15.435 18.051 hybrid contribution -0.589 0.221 1.597 1.716 sum -9.947 0.401 -13.839 17.047 Atomic orbital electron populations 1.22450 0.95742 1.02125 1.03374 1.22083 0.94147 0.96059 0.91792 1.21854 1.01474 0.93951 1.02776 1.60609 1.53665 0.99978 1.04570 1.23427 0.98394 0.97115 0.88110 1.18868 0.95660 0.89537 0.93317 0.94239 1.20754 0.99457 1.29066 1.03948 0.96107 1.25898 0.98383 0.97154 0.96771 1.70046 1.26856 1.45344 1.16214 0.85848 0.79851 0.78657 0.79516 1.20001 1.20226 1.16042 1.21004 1.04129 0.96239 0.97414 1.19698 0.92921 0.92125 0.92991 1.20813 1.05267 0.93189 0.98276 1.21074 0.95584 0.95609 0.95936 1.21233 1.07372 0.99703 0.92436 1.17638 1.01563 0.93261 0.79602 1.91399 1.90147 1.92338 1.39945 0.93062 0.89041 0.92996 0.88040 0.92732 0.89094 0.93310 0.91752 0.90825 0.92336 0.83028 0.80618 0.82803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.13 8.57 71.98 0.62 -3.52 16 2 C 0.06 1.70 2.76 44.91 0.12 1.83 16 3 C -0.14 -3.38 9.10 71.98 0.65 -2.72 16 4 N -0.48 -17.70 5.08 -664.85 -3.38 -21.07 16 5 C 0.06 2.32 4.79 86.65 0.42 2.73 16 6 C 0.05 2.25 2.40 -11.46 -0.03 2.22 16 7 H 0.04 1.97 5.66 -2.39 -0.01 1.95 16 8 C -0.49 -29.74 8.88 25.60 0.23 -29.51 16 9 H 0.02 1.43 8.06 -2.91 -0.02 1.41 16 10 C 0.02 0.92 5.47 84.66 0.46 1.38 16 11 N -0.94 -60.64 13.96 21.45 0.30 -60.34 16 12 Si 0.94 44.93 27.19 68.60 1.87 46.80 16 13 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 14 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 15 H -0.24 -10.23 6.56 99.48 0.65 -9.58 16 16 C -0.18 -8.24 5.53 -19.45 -0.11 -8.35 16 17 C 0.12 4.58 4.68 38.28 0.18 4.76 16 18 C -0.15 -4.39 8.95 22.48 0.20 -4.19 16 19 C -0.06 -1.60 10.02 22.20 0.22 -1.38 16 20 C -0.19 -5.83 10.04 22.35 0.22 -5.61 16 21 C 0.10 4.14 7.29 22.32 0.16 4.30 16 22 F -0.16 -7.32 17.27 44.97 0.78 -6.54 16 23 H 0.05 1.28 6.29 -2.38 -0.02 1.26 16 24 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.05 1.31 6.57 -2.38 -0.02 1.30 16 26 H 0.10 2.28 7.30 -2.39 -0.02 2.26 16 27 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.05 1.25 7.16 -2.39 -0.02 1.23 16 30 H 0.06 2.34 5.65 -2.39 -0.01 2.33 16 31 H 0.07 3.29 7.89 -2.39 -0.02 3.27 16 32 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 33 H 0.15 3.25 7.37 -2.91 -0.02 3.23 16 34 H 0.18 2.69 8.06 -2.91 -0.02 2.67 16 35 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -72.82 283.55 3.95 -68.87 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 1.03 Total: 10.35 kcal Atomic # 6 Polarization: -41.41 SS G_CDS: 3.36 Total: -38.06 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -3.08 Total: -81.41 kcal Atomic # 9 Polarization: -7.32 SS G_CDS: 0.78 Total: -6.54 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.87 Total: 46.80 kcal Total: -72.82 3.95 -68.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260542180.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.704 kcal (2) G-P(sol) polarization free energy of solvation -72.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds