Wall clock time and date at job start Mon Mar 30 2020 06:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47486 * 2 1 4 4 N 1.46902 * 109.46997 * 120.00103 * 2 1 3 5 5 C 1.47898 * 111.00243 * 298.63487 * 4 2 1 6 6 C 1.54601 * 102.63497 * 148.99949 * 5 4 2 7 7 H 1.09005 * 110.74270 * 92.91089 * 6 5 4 8 8 C 1.50696 * 110.74399 * 216.06860 * 6 5 4 9 9 H 1.08006 * 119.99681 * 92.07654 * 8 6 5 10 10 C 1.37876 * 120.00249 * 272.06525 * 8 6 5 11 11 N 1.31512 * 120.00122 * 174.26653 * 10 8 6 12 12 Si 1.86801 * 119.99772 * 353.99575 * 10 8 6 13 13 H 1.48494 * 109.47237 * 92.45084 * 12 10 8 14 14 H 1.48498 * 109.46758 * 212.45015 * 12 10 8 15 15 H 1.48502 * 109.47025 * 332.44989 * 12 10 8 16 16 C 1.51570 * 102.81116 * 334.40394 * 6 5 4 17 17 C 1.38963 * 107.95493 * 16.18625 * 16 6 5 18 18 C 1.39381 * 119.10291 * 180.39877 * 17 16 6 19 19 C 1.37967 * 120.25056 * 359.73137 * 18 17 16 20 20 C 1.38223 * 120.29215 * 359.97438 * 19 18 17 21 21 C 1.38089 * 131.57528 * 196.16996 * 16 6 5 22 22 F 1.35103 * 119.98498 * 359.76314 * 21 16 6 23 23 H 1.09005 * 109.47160 * 306.70812 * 1 2 3 24 24 H 1.09005 * 109.47448 * 66.70530 * 1 2 3 25 25 H 1.09006 * 109.47497 * 186.70509 * 1 2 3 26 26 H 1.09005 * 109.46948 * 239.99660 * 2 1 3 27 27 H 1.08996 * 109.46610 * 63.03930 * 3 2 1 28 28 H 1.08996 * 109.47016 * 183.04415 * 3 2 1 29 29 H 1.08999 * 109.46838 * 303.04103 * 3 2 1 30 30 H 1.09001 * 110.77795 * 30.71357 * 5 4 2 31 31 H 1.09007 * 110.93786 * 267.36294 * 5 4 2 32 32 H 0.97001 * 120.00494 * 180.02562 * 11 10 8 33 33 H 1.08002 * 119.87804 * 179.75478 * 18 17 16 34 34 H 1.08000 * 119.84979 * 180.02562 * 19 18 17 35 35 H 1.07999 * 120.07182 * 180.12993 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.5724 -0.0032 2.4292 6 6 1.4390 -1.1661 3.4392 7 1 2.3608 -1.2918 4.0072 8 6 0.2713 -0.9383 4.3642 9 1 -0.7005 -1.3389 4.1158 10 6 0.4435 -0.2187 5.5276 11 7 -0.5954 0.0767 6.2779 12 14 2.1534 0.3300 6.0419 13 1 2.4153 1.6933 5.5147 14 1 2.2429 0.3469 7.5241 15 1 3.1614 -0.6140 5.4958 16 6 1.1887 -2.3626 2.5430 17 6 1.5456 -2.0094 1.2473 18 6 1.3991 -2.9452 0.2248 19 6 0.9111 -4.2058 0.5010 20 6 0.5641 -4.5513 1.7936 21 6 0.7035 -3.6263 2.8159 22 9 0.3642 -3.9609 4.0801 23 1 -0.3634 0.6143 0.8239 24 1 -0.3634 0.4064 -0.9439 25 1 -0.3634 -1.0207 0.1200 26 1 1.8932 -0.5139 -0.8900 27 1 1.7219 1.9402 0.9160 28 1 3.1286 1.4429 -0.0546 29 1 1.6329 1.9718 -0.8615 30 1 0.6103 0.4841 2.2712 31 1 2.3184 0.7171 2.7651 32 1 -0.4743 0.5833 7.0963 33 1 1.6689 -2.6827 -0.7875 34 1 0.8006 -4.9260 -0.2961 35 1 0.1845 -5.5398 2.0061 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260542186.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:20 Heat of formation + Delta-G solvation = -9.128486 kcal Electronic energy + Delta-G solvation = -18800.942568 eV Core-core repulsion = 15906.376413 eV Total energy + Delta-G solvation = -2894.566155 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -47.93429 -40.37791 -36.66318 -34.22225 -32.25328 -30.46087 -28.56271 -28.26365 -26.93064 -24.67222 -22.28640 -21.82193 -20.42455 -19.12976 -17.19230 -16.51325 -15.87824 -15.34399 -15.15964 -14.76453 -14.40045 -14.09558 -13.99479 -13.57344 -13.01704 -12.68961 -12.34867 -12.18078 -12.00132 -11.89117 -11.42748 -11.39598 -11.11695 -11.08023 -10.75703 -10.60120 -10.52631 -9.99185 -9.83691 -9.43542 -9.29533 -8.63998 -7.93008 -7.19491 -6.14058 -4.14730 1.74424 1.83966 3.23409 3.33074 3.34706 3.97471 4.34848 4.37253 4.96499 5.04731 5.06425 5.20076 5.27450 5.39991 5.49406 5.58103 5.74497 5.76594 5.85576 5.93221 5.97587 6.07762 6.16142 6.19268 6.35246 6.45653 6.52950 6.60868 6.76298 6.84651 6.91748 7.06037 7.19640 7.53829 7.61379 7.75381 8.43877 8.90767 9.46236 10.98490 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017703 B = 0.011339 C = 0.007862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.276806 B = 2468.727714 C = 3560.780402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.072 3.928 3 C -0.147 4.147 4 N -0.476 5.476 5 C 0.041 3.959 6 C 0.042 3.958 7 H 0.064 0.936 8 C -0.503 4.503 9 H 0.076 0.924 10 C 0.077 3.923 11 N -0.893 5.893 12 Si 0.868 3.132 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.260 1.260 16 C -0.134 4.134 17 C 0.121 3.879 18 C -0.162 4.162 19 C -0.084 4.084 20 C -0.194 4.194 21 C 0.144 3.856 22 F -0.130 7.130 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.265 0.735 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.257 -2.345 -12.674 13.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.035 4.035 3 C -0.204 4.204 4 N -0.190 5.190 5 C -0.085 4.085 6 C 0.023 3.977 7 H 0.082 0.918 8 C -0.541 4.541 9 H 0.094 0.906 10 C -0.125 4.125 11 N -0.530 5.530 12 Si 0.695 3.305 13 H -0.200 1.200 14 H -0.211 1.211 15 H -0.185 1.185 16 C -0.138 4.138 17 C 0.022 3.978 18 C -0.183 4.183 19 C -0.103 4.103 20 C -0.214 4.214 21 C 0.124 3.876 22 F -0.109 7.109 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.134 0.866 34 H 0.142 0.858 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.756 -2.132 -12.478 13.523 hybrid contribution 0.040 0.285 0.622 0.685 sum 4.795 -1.847 -11.856 12.922 Atomic orbital electron populations 1.22498 0.96492 1.03171 1.02227 1.21804 0.93587 0.95226 0.92887 1.21869 1.01492 0.94866 1.02193 1.60784 1.53448 1.00129 1.04597 1.23880 0.99362 0.98447 0.86772 1.19142 0.99106 0.86502 0.92950 0.91826 1.20771 0.95072 1.34222 1.04027 0.90608 1.25008 0.96473 0.95035 0.96027 1.69893 1.29599 1.38870 1.14599 0.86937 0.85843 0.79467 0.78228 1.20004 1.21099 1.18534 1.20975 1.00859 0.95586 0.96372 1.19435 0.93298 0.91571 0.93453 1.20325 1.06692 0.93648 0.97623 1.20471 0.98692 0.95601 0.95558 1.20895 1.08072 0.99706 0.92737 1.17076 0.98574 0.92459 0.79518 1.91512 1.89571 1.92459 1.37312 0.91449 0.92388 0.91875 0.90208 0.91934 0.92107 0.92230 0.91015 0.90805 0.92488 0.86575 0.85768 0.85541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.75 8.58 37.15 0.32 -2.43 16 2 C 0.07 1.05 2.76 -67.72 -0.19 0.86 16 3 C -0.15 -1.89 9.13 37.16 0.34 -1.55 16 4 N -0.48 -8.66 5.09 -161.51 -0.82 -9.48 16 5 C 0.04 0.84 4.60 -2.43 -0.01 0.83 16 6 C 0.04 1.00 2.47 -91.66 -0.23 0.78 16 7 H 0.06 1.59 5.42 -51.93 -0.28 1.30 16 8 C -0.50 -13.95 8.33 -34.44 -0.29 -14.24 16 9 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 10 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 11 N -0.89 -26.81 13.96 55.43 0.77 -26.04 16 12 Si 0.87 21.02 27.52 -169.99 -4.68 16.34 16 13 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.26 -6.13 6.01 56.52 0.34 -5.79 16 16 C -0.13 -2.95 5.63 -103.98 -0.59 -3.53 16 17 C 0.12 2.29 4.68 -83.41 -0.39 1.90 16 18 C -0.16 -2.55 8.85 -39.26 -0.35 -2.90 16 19 C -0.08 -1.25 10.02 -39.69 -0.40 -1.64 16 20 C -0.19 -3.28 10.04 -39.46 -0.40 -3.68 16 21 C 0.14 3.03 7.21 -39.51 -0.29 2.74 16 22 F -0.13 -3.02 16.78 2.25 0.04 -2.99 16 23 H 0.07 1.11 6.33 -51.93 -0.33 0.78 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.06 1.02 6.45 -51.93 -0.33 0.69 16 26 H 0.08 1.05 7.38 -51.93 -0.38 0.67 16 27 H 0.06 0.87 6.94 -51.93 -0.36 0.51 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.52 5.44 -51.93 -0.28 1.24 16 31 H 0.07 1.47 8.08 -51.93 -0.42 1.05 16 32 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.12 1.54 7.41 -52.49 -0.39 1.15 16 34 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 LS Contribution 281.70 15.07 4.25 4.25 Total: -1.00 -29.87 281.70 -7.51 -37.38 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -4.51 Total: 1.31 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -2.55 Total: -20.76 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.05 Total: -35.52 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.04 Total: -2.99 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.68 Total: 16.34 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.87 -7.51 -37.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260542186.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.249 kcal (2) G-P(sol) polarization free energy of solvation -29.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds