Wall clock time and date at job start Mon Mar 30 2020 06:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47486 * 2 1 4 4 N 1.46902 * 109.46997 * 120.00103 * 2 1 3 5 5 C 1.47898 * 111.00243 * 298.63487 * 4 2 1 6 6 C 1.54601 * 102.63497 * 148.99949 * 5 4 2 7 7 H 1.09005 * 110.74270 * 92.91089 * 6 5 4 8 8 C 1.50696 * 110.74399 * 216.06860 * 6 5 4 9 9 H 1.08006 * 119.99681 * 92.07654 * 8 6 5 10 10 C 1.37876 * 120.00249 * 272.06525 * 8 6 5 11 11 N 1.31512 * 120.00122 * 174.26653 * 10 8 6 12 12 Si 1.86801 * 119.99772 * 353.99575 * 10 8 6 13 13 H 1.48494 * 109.47237 * 92.45084 * 12 10 8 14 14 H 1.48498 * 109.46758 * 212.45015 * 12 10 8 15 15 H 1.48502 * 109.47025 * 332.44989 * 12 10 8 16 16 C 1.51570 * 102.81116 * 334.40394 * 6 5 4 17 17 C 1.38963 * 107.95493 * 16.18625 * 16 6 5 18 18 C 1.39381 * 119.10291 * 180.39877 * 17 16 6 19 19 C 1.37967 * 120.25056 * 359.73137 * 18 17 16 20 20 C 1.38223 * 120.29215 * 359.97438 * 19 18 17 21 21 C 1.38089 * 131.57528 * 196.16996 * 16 6 5 22 22 F 1.35103 * 119.98498 * 359.76314 * 21 16 6 23 23 H 1.09005 * 109.47160 * 306.70812 * 1 2 3 24 24 H 1.09005 * 109.47448 * 66.70530 * 1 2 3 25 25 H 1.09006 * 109.47497 * 186.70509 * 1 2 3 26 26 H 1.09005 * 109.46948 * 239.99660 * 2 1 3 27 27 H 1.08996 * 109.46610 * 63.03930 * 3 2 1 28 28 H 1.08996 * 109.47016 * 183.04415 * 3 2 1 29 29 H 1.08999 * 109.46838 * 303.04103 * 3 2 1 30 30 H 1.09001 * 110.77795 * 30.71357 * 5 4 2 31 31 H 1.09007 * 110.93786 * 267.36294 * 5 4 2 32 32 H 0.97001 * 120.00494 * 180.02562 * 11 10 8 33 33 H 1.08002 * 119.87804 * 179.75478 * 18 17 16 34 34 H 1.08000 * 119.84979 * 180.02562 * 19 18 17 35 35 H 1.07999 * 120.07182 * 180.12993 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.5724 -0.0032 2.4292 6 6 1.4390 -1.1661 3.4392 7 1 2.3608 -1.2918 4.0072 8 6 0.2713 -0.9383 4.3642 9 1 -0.7005 -1.3389 4.1158 10 6 0.4435 -0.2187 5.5276 11 7 -0.5954 0.0767 6.2779 12 14 2.1534 0.3300 6.0419 13 1 2.4153 1.6933 5.5147 14 1 2.2429 0.3469 7.5241 15 1 3.1614 -0.6140 5.4958 16 6 1.1887 -2.3626 2.5430 17 6 1.5456 -2.0094 1.2473 18 6 1.3991 -2.9452 0.2248 19 6 0.9111 -4.2058 0.5010 20 6 0.5641 -4.5513 1.7936 21 6 0.7035 -3.6263 2.8159 22 9 0.3642 -3.9609 4.0801 23 1 -0.3634 0.6143 0.8239 24 1 -0.3634 0.4064 -0.9439 25 1 -0.3634 -1.0207 0.1200 26 1 1.8932 -0.5139 -0.8900 27 1 1.7219 1.9402 0.9160 28 1 3.1286 1.4429 -0.0546 29 1 1.6329 1.9718 -0.8615 30 1 0.6103 0.4841 2.2712 31 1 2.3184 0.7171 2.7651 32 1 -0.4743 0.5833 7.0963 33 1 1.6689 -2.6827 -0.7875 34 1 0.8006 -4.9260 -0.2961 35 1 0.1845 -5.5398 2.0061 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260542186.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:20 Heat of formation + Delta-G solvation = -27.982449 kcal Electronic energy + Delta-G solvation = -18801.760137 eV Core-core repulsion = 15906.376413 eV Total energy + Delta-G solvation = -2895.383724 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.62239 -41.81891 -37.98506 -35.89029 -34.12690 -31.94807 -30.06736 -29.77759 -28.03209 -26.53594 -23.78919 -23.21175 -22.02396 -20.51358 -19.24699 -18.03975 -17.40741 -16.77161 -16.68317 -16.35225 -16.00781 -15.81376 -15.34234 -15.01993 -14.69723 -14.38305 -13.85303 -13.54179 -13.36205 -13.13194 -12.99713 -12.86018 -12.73089 -12.38521 -12.24202 -12.08887 -11.86605 -11.74756 -11.65148 -11.40757 -10.86358 -10.66661 -9.43534 -8.63615 -8.34035 -6.38571 0.34810 0.43257 1.28022 1.32744 1.41724 2.28760 2.59925 2.94748 3.01286 3.54631 3.74748 3.91489 4.10673 4.12253 4.16038 4.33761 4.39872 4.44829 4.56461 4.63109 4.72100 4.77230 4.89813 4.92964 5.04455 5.11518 5.24007 5.30310 5.35572 5.38709 5.42834 5.46998 5.56564 5.80372 6.11092 6.23784 6.36870 6.64639 7.25206 8.82859 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017703 B = 0.011339 C = 0.007862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.276806 B = 2468.727714 C = 3560.780402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.069 3.931 3 C -0.144 4.144 4 N -0.475 5.475 5 C 0.054 3.946 6 C 0.036 3.964 7 H 0.049 0.951 8 C -0.500 4.500 9 H 0.024 0.976 10 C 0.019 3.981 11 N -0.944 5.944 12 Si 0.934 3.066 13 H -0.253 1.253 14 H -0.284 1.284 15 H -0.252 1.252 16 C -0.182 4.182 17 C 0.116 3.884 18 C -0.149 4.149 19 C -0.064 4.064 20 C -0.189 4.189 21 C 0.103 3.897 22 F -0.158 7.158 23 H 0.039 0.961 24 H 0.089 0.911 25 H 0.046 0.954 26 H 0.109 0.891 27 H 0.043 0.957 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.268 0.732 33 H 0.156 0.844 34 H 0.177 0.823 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.145 -2.751 -16.357 17.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.037 4.037 3 C -0.201 4.201 4 N -0.189 5.189 5 C -0.072 4.072 6 C 0.017 3.983 7 H 0.066 0.934 8 C -0.538 4.538 9 H 0.042 0.958 10 C -0.179 4.179 11 N -0.583 5.583 12 Si 0.758 3.242 13 H -0.178 1.178 14 H -0.209 1.209 15 H -0.176 1.176 16 C -0.185 4.185 17 C 0.017 3.983 18 C -0.170 4.170 19 C -0.082 4.082 20 C -0.209 4.209 21 C 0.083 3.917 22 F -0.137 7.137 23 H 0.058 0.942 24 H 0.108 0.892 25 H 0.065 0.935 26 H 0.127 0.873 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.174 0.826 34 H 0.195 0.805 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 6.650 -2.542 -16.192 17.688 hybrid contribution -0.646 0.293 1.627 1.776 sum 6.004 -2.249 -14.564 15.913 Atomic orbital electron populations 1.22454 0.96880 1.01757 1.02806 1.22048 0.93257 0.96312 0.92064 1.21872 1.02030 0.93712 1.02534 1.60820 1.53385 1.00011 1.04669 1.23477 0.99008 0.97133 0.87580 1.19026 0.96397 0.89474 0.93379 0.93360 1.20844 0.94521 1.33235 1.05160 0.95752 1.25859 1.00713 0.95318 0.95976 1.70044 1.32135 1.40666 1.15465 0.85892 0.80611 0.80032 0.77714 1.17768 1.20949 1.17631 1.20999 1.04240 0.95663 0.97638 1.19694 0.93395 0.92283 0.92933 1.20820 1.04709 0.93056 0.98394 1.21088 0.95544 0.96000 0.95582 1.21265 1.07134 0.99851 0.92627 1.17707 1.00634 0.93753 0.79613 1.91430 1.90186 1.92694 1.39368 0.94182 0.89189 0.93515 0.87269 0.93788 0.91379 0.89481 0.92376 0.90175 0.92342 0.82645 0.80550 0.83076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.00 8.58 71.98 0.62 -4.38 16 2 C 0.07 1.80 2.76 44.91 0.12 1.92 16 3 C -0.14 -3.27 9.13 71.98 0.66 -2.62 16 4 N -0.48 -16.48 5.09 -664.88 -3.38 -19.87 16 5 C 0.05 2.26 4.60 86.66 0.40 2.66 16 6 C 0.04 1.80 2.47 -11.46 -0.03 1.77 16 7 H 0.05 2.49 5.42 -2.38 -0.01 2.48 16 8 C -0.50 -29.58 8.33 25.60 0.21 -29.37 16 9 H 0.02 1.64 8.06 -2.91 -0.02 1.61 16 10 C 0.02 1.14 5.47 84.65 0.46 1.60 16 11 N -0.94 -59.85 13.96 21.45 0.30 -59.55 16 12 Si 0.93 44.77 27.52 68.60 1.89 46.66 16 13 H -0.25 -11.22 7.11 99.48 0.71 -10.51 16 14 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 15 H -0.25 -11.62 6.01 99.48 0.60 -11.02 16 16 C -0.18 -8.16 5.63 -19.45 -0.11 -8.27 16 17 C 0.12 4.18 4.68 38.28 0.18 4.36 16 18 C -0.15 -4.04 8.85 22.48 0.20 -3.84 16 19 C -0.06 -1.58 10.02 22.20 0.22 -1.36 16 20 C -0.19 -6.00 10.04 22.35 0.22 -5.78 16 21 C 0.10 4.43 7.21 22.31 0.16 4.59 16 22 F -0.16 -7.83 16.78 44.97 0.75 -7.07 16 23 H 0.04 1.31 6.33 -2.38 -0.02 1.30 16 24 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 25 H 0.05 1.43 6.45 -2.38 -0.02 1.42 16 26 H 0.11 2.28 7.38 -2.38 -0.02 2.26 16 27 H 0.04 1.16 6.94 -2.39 -0.02 1.14 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 2.56 5.44 -2.39 -0.01 2.55 16 31 H 0.08 3.18 8.08 -2.38 -0.02 3.16 16 32 H 0.27 15.80 8.31 -92.71 -0.77 15.02 16 33 H 0.16 3.05 7.41 -2.91 -0.02 3.03 16 34 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 35 H 0.15 3.95 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -71.40 281.70 3.86 -67.54 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: 0.98 Total: 11.00 kcal Atomic # 6 Polarization: -42.03 SS G_CDS: 3.32 Total: -38.70 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -3.08 Total: -79.42 kcal Atomic # 9 Polarization: -7.83 SS G_CDS: 0.75 Total: -7.07 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.89 Total: 46.66 kcal Total: -71.40 3.86 -67.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260542186.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.553 kcal (2) G-P(sol) polarization free energy of solvation -71.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds