Wall clock time and date at job start Mon Mar 30 2020 06:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50704 * 109.90447 * 2 1 4 4 C 1.38238 * 119.97430 * 151.06473 * 3 2 1 5 5 C 1.38205 * 120.02675 * 180.27794 * 4 3 2 6 6 C 1.38457 * 119.97096 * 359.49211 * 5 4 3 7 7 F 1.35101 * 120.02343 * 180.23345 * 6 5 4 8 8 C 1.38461 * 119.95199 * 0.25270 * 6 5 4 9 9 C 1.38205 * 119.97165 * 0.02562 * 8 6 5 10 10 N 1.47896 * 110.08451 * 121.20592 * 2 1 3 11 11 C 1.48532 * 105.81850 * 94.11547 * 10 2 1 12 12 C 1.54942 * 103.22688 * 39.20673 * 11 10 2 13 13 C 1.53990 * 109.91841 * 238.89889 * 2 1 3 14 14 H 1.09004 * 110.30723 * 0.68712 * 13 2 1 15 15 C 1.50704 * 110.31047 * 122.75261 * 13 2 1 16 16 H 1.08000 * 119.99854 * 5.27261 * 15 13 2 17 17 C 1.37871 * 119.99885 * 185.26573 * 15 13 2 18 18 N 1.31509 * 120.00300 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 119.99722 * 180.02562 * 17 15 13 20 20 H 1.48510 * 109.46886 * 90.00015 * 19 17 15 21 21 H 1.48500 * 109.47208 * 209.99928 * 19 17 15 22 22 H 1.48495 * 109.47223 * 330.00530 * 19 17 15 23 23 H 1.08993 * 109.47278 * 60.70298 * 1 2 3 24 24 H 1.08998 * 109.46534 * 180.70081 * 1 2 3 25 25 H 1.08999 * 109.46952 * 300.69316 * 1 2 3 26 26 H 1.08007 * 119.98976 * 0.02562 * 4 3 2 27 27 H 1.07999 * 120.01137 * 179.77183 * 5 4 3 28 28 H 1.07997 * 120.01927 * 180.02562 * 8 6 5 29 29 H 1.07991 * 119.98541 * 180.02562 * 9 8 6 30 30 H 1.00892 * 111.00438 * 214.62758 * 10 2 1 31 31 H 1.09000 * 110.67112 * 280.77226 * 11 10 2 32 32 H 1.09006 * 110.81398 * 157.70817 * 11 10 2 33 33 H 1.09001 * 110.72414 * 204.22562 * 12 11 10 34 34 H 1.09004 * 110.87201 * 81.01763 * 12 11 10 35 35 H 0.97001 * 120.00160 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0431 1.4170 0.0000 4 6 3.2636 1.7096 0.5794 5 6 3.7326 3.0097 0.5851 6 6 2.9842 4.0175 0.0009 7 9 3.4438 5.2879 0.0017 8 6 1.7643 3.7224 -0.5838 9 6 1.2948 2.4225 -0.5832 10 7 2.0379 -0.7197 1.1880 11 6 2.2733 -2.1176 0.7446 12 6 2.8579 -1.9441 -0.6797 13 6 2.0547 -0.7478 -1.2397 14 1 1.2225 -1.1010 -1.8487 15 6 2.9518 0.1504 -2.0517 16 1 3.2080 1.1330 -1.6838 17 6 3.4454 -0.2821 -3.2642 18 7 3.1331 -1.4784 -3.7123 19 14 4.5580 0.8311 -4.2704 20 1 5.9733 0.5911 -3.8899 21 1 4.3770 0.5372 -5.7147 22 1 4.2083 2.2499 -4.0063 23 1 -0.3633 0.5028 -0.8962 24 1 -0.3632 -1.0276 0.0126 25 1 -0.3633 0.5246 0.8837 26 1 3.8492 0.9226 1.0314 27 1 4.6845 3.2386 1.0410 28 1 1.1798 4.5076 -1.0402 29 1 0.3435 2.1921 -1.0395 30 1 2.8900 -0.3000 1.5282 31 1 1.3363 -2.6734 0.7108 32 1 2.9909 -2.6152 1.3970 33 1 2.6862 -2.8384 -1.2787 34 1 3.9213 -1.7085 -0.6370 35 1 3.4807 -1.7829 -4.5652 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260553915.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:09 Heat of formation + Delta-G solvation = -14.942547 kcal Electronic energy + Delta-G solvation = -18792.386634 eV Core-core repulsion = 15897.568363 eV Total energy + Delta-G solvation = -2894.818272 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.44985 -39.76076 -37.05500 -32.74694 -31.76328 -30.66482 -28.95873 -28.31335 -26.00339 -23.62656 -22.31804 -21.87773 -20.14527 -18.58968 -17.53838 -16.59288 -15.75537 -15.51373 -15.14399 -14.80740 -14.26774 -13.95259 -13.31984 -13.19452 -12.93859 -12.83923 -12.24299 -12.17112 -11.72820 -11.59621 -11.38511 -11.05557 -10.97245 -10.60386 -10.53470 -10.33984 -10.17380 -9.81686 -9.38143 -8.86021 -8.57037 -8.43980 -8.01325 -7.63404 -6.06907 -4.08559 1.74056 1.77027 3.27008 3.34689 3.40026 4.14892 4.40684 4.73681 4.93379 5.16840 5.27440 5.29982 5.32917 5.74623 5.77037 5.88014 6.01386 6.11025 6.24062 6.27060 6.31843 6.41778 6.49869 6.55830 6.61922 6.72237 6.80474 6.93060 7.09565 7.16327 7.39189 7.41490 7.52135 7.81688 7.93824 7.97056 8.35266 8.95139 9.57194 11.03196 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.015838 B = 0.011814 C = 0.007954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.439751 B = 2369.448226 C = 3519.294045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.128 3.872 3 C -0.016 4.016 4 C -0.092 4.092 5 C -0.151 4.151 6 C 0.068 3.932 7 F -0.152 7.152 8 C -0.151 4.151 9 C -0.088 4.088 10 N -0.672 5.672 11 C 0.033 3.967 12 C -0.131 4.131 13 C 0.041 3.959 14 H 0.042 0.958 15 C -0.517 4.517 16 H 0.070 0.930 17 C 0.067 3.933 18 N -0.889 5.889 19 Si 0.880 3.120 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.272 1.272 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.131 0.869 30 H 0.329 0.671 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.246 4.342 7.603 9.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.037 3.963 3 C -0.017 4.017 4 C -0.110 4.110 5 C -0.170 4.170 6 C 0.049 3.951 7 F -0.131 7.131 8 C -0.169 4.169 9 C -0.106 4.106 10 N -0.302 5.302 11 C -0.096 4.096 12 C -0.170 4.170 13 C 0.021 3.979 14 H 0.060 0.940 15 C -0.555 4.555 16 H 0.088 0.912 17 C -0.135 4.135 18 N -0.527 5.527 19 Si 0.708 3.292 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.197 1.197 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.143 0.857 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.851 4.156 7.801 9.288 hybrid contribution 1.757 0.784 -1.457 2.413 sum -1.094 4.940 6.344 8.115 Atomic orbital electron populations 1.21743 0.94303 1.01389 1.00485 1.20874 0.94562 0.89205 0.91624 1.19745 0.93316 0.95138 0.93454 1.20664 0.95665 0.95071 0.99622 1.20930 1.00424 0.92775 1.02832 1.17602 0.95150 0.78784 1.03609 1.91426 1.89047 1.37444 1.95207 1.20992 0.95537 0.98103 1.02309 1.20835 1.00438 0.91055 0.98282 1.63030 1.33733 1.03008 1.30413 1.23161 0.99516 0.90395 0.96558 1.23074 0.99815 1.00509 0.93628 1.19875 0.95661 0.91760 0.90591 0.93959 1.21464 1.29061 1.01532 1.03416 0.91181 1.24942 0.96245 0.94851 0.97500 1.69963 1.44678 1.17728 1.20336 0.86758 0.81269 0.81537 0.79591 1.20774 1.21289 1.19724 0.92421 0.92823 0.93298 0.85706 0.85642 0.85614 0.85127 0.85212 0.91465 0.92483 0.92158 0.92761 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 7.88 37.16 0.29 -1.79 16 2 C 0.13 2.44 1.00 -131.68 -0.13 2.31 16 3 C -0.02 -0.29 2.82 -104.62 -0.30 -0.59 16 4 C -0.09 -1.62 7.97 -39.59 -0.32 -1.94 16 5 C -0.15 -2.54 10.03 -39.51 -0.40 -2.94 16 6 C 0.07 1.18 7.30 -39.42 -0.29 0.89 16 7 F -0.15 -2.61 17.27 2.25 0.04 -2.57 16 8 C -0.15 -2.54 10.03 -39.51 -0.40 -2.94 16 9 C -0.09 -1.55 8.76 -39.59 -0.35 -1.90 16 10 N -0.67 -11.86 7.03 -97.62 -0.69 -12.54 16 11 C 0.03 0.59 7.54 -1.90 -0.01 0.57 16 12 C -0.13 -2.83 6.09 -24.87 -0.15 -2.98 16 13 C 0.04 0.93 2.42 -90.42 -0.22 0.72 16 14 H 0.04 1.08 7.68 -51.93 -0.40 0.68 16 15 C -0.52 -13.15 7.54 -34.44 -0.26 -13.41 16 16 H 0.07 1.78 4.61 -52.49 -0.24 1.54 16 17 C 0.07 1.79 5.37 -17.82 -0.10 1.69 16 18 N -0.89 -24.81 12.91 55.43 0.72 -24.10 16 19 Si 0.88 21.24 29.54 -169.99 -5.02 16.22 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H 0.06 0.96 6.60 -51.93 -0.34 0.62 16 24 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.13 2.05 6.11 -52.48 -0.32 1.73 16 27 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 28 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 29 H 0.13 2.13 6.19 -52.49 -0.33 1.81 16 30 H 0.33 5.52 5.82 -39.30 -0.23 5.29 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.05 1.25 7.86 -51.93 -0.41 0.84 16 35 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 282.81 15.07 4.26 4.26 Total: -1.00 -27.53 282.81 -7.67 -35.19 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -4.36 Total: 5.83 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: -2.62 Total: -22.30 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.03 Total: -36.64 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.04 Total: -2.57 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.53 -7.67 -35.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260553915.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.251 kcal (2) G-P(sol) polarization free energy of solvation -27.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds