Wall clock time and date at job start Mon Mar 30 2020 06:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50704 * 109.90447 * 2 1 4 4 C 1.38238 * 119.97430 * 151.06473 * 3 2 1 5 5 C 1.38205 * 120.02675 * 180.27794 * 4 3 2 6 6 C 1.38457 * 119.97096 * 359.49211 * 5 4 3 7 7 F 1.35101 * 120.02343 * 180.23345 * 6 5 4 8 8 C 1.38461 * 119.95199 * 0.25270 * 6 5 4 9 9 C 1.38205 * 119.97165 * 0.02562 * 8 6 5 10 10 N 1.47896 * 110.08451 * 121.20592 * 2 1 3 11 11 C 1.48532 * 105.81850 * 94.11547 * 10 2 1 12 12 C 1.54942 * 103.22688 * 39.20673 * 11 10 2 13 13 C 1.53990 * 109.91841 * 238.89889 * 2 1 3 14 14 H 1.09004 * 110.30723 * 0.68712 * 13 2 1 15 15 C 1.50704 * 110.31047 * 122.75261 * 13 2 1 16 16 H 1.08000 * 119.99854 * 5.27261 * 15 13 2 17 17 C 1.37871 * 119.99885 * 185.26573 * 15 13 2 18 18 N 1.31509 * 120.00300 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 119.99722 * 180.02562 * 17 15 13 20 20 H 1.48510 * 109.46886 * 90.00015 * 19 17 15 21 21 H 1.48500 * 109.47208 * 209.99928 * 19 17 15 22 22 H 1.48495 * 109.47223 * 330.00530 * 19 17 15 23 23 H 1.08993 * 109.47278 * 60.70298 * 1 2 3 24 24 H 1.08998 * 109.46534 * 180.70081 * 1 2 3 25 25 H 1.08999 * 109.46952 * 300.69316 * 1 2 3 26 26 H 1.08007 * 119.98976 * 0.02562 * 4 3 2 27 27 H 1.07999 * 120.01137 * 179.77183 * 5 4 3 28 28 H 1.07997 * 120.01927 * 180.02562 * 8 6 5 29 29 H 1.07991 * 119.98541 * 180.02562 * 9 8 6 30 30 H 1.00892 * 111.00438 * 214.62758 * 10 2 1 31 31 H 1.09000 * 110.67112 * 280.77226 * 11 10 2 32 32 H 1.09006 * 110.81398 * 157.70817 * 11 10 2 33 33 H 1.09001 * 110.72414 * 204.22562 * 12 11 10 34 34 H 1.09004 * 110.87201 * 81.01763 * 12 11 10 35 35 H 0.97001 * 120.00160 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0431 1.4170 0.0000 4 6 3.2636 1.7096 0.5794 5 6 3.7326 3.0097 0.5851 6 6 2.9842 4.0175 0.0009 7 9 3.4438 5.2879 0.0017 8 6 1.7643 3.7224 -0.5838 9 6 1.2948 2.4225 -0.5832 10 7 2.0379 -0.7197 1.1880 11 6 2.2733 -2.1176 0.7446 12 6 2.8579 -1.9441 -0.6797 13 6 2.0547 -0.7478 -1.2397 14 1 1.2225 -1.1010 -1.8487 15 6 2.9518 0.1504 -2.0517 16 1 3.2080 1.1330 -1.6838 17 6 3.4454 -0.2821 -3.2642 18 7 3.1331 -1.4784 -3.7123 19 14 4.5580 0.8311 -4.2704 20 1 5.9733 0.5911 -3.8899 21 1 4.3770 0.5372 -5.7147 22 1 4.2083 2.2499 -4.0063 23 1 -0.3633 0.5028 -0.8962 24 1 -0.3632 -1.0276 0.0126 25 1 -0.3633 0.5246 0.8837 26 1 3.8492 0.9226 1.0314 27 1 4.6845 3.2386 1.0410 28 1 1.1798 4.5076 -1.0402 29 1 0.3435 2.1921 -1.0395 30 1 2.8900 -0.3000 1.5282 31 1 1.3363 -2.6734 0.7108 32 1 2.9909 -2.6152 1.3970 33 1 2.6862 -2.8384 -1.2787 34 1 3.9213 -1.7085 -0.6370 35 1 3.4807 -1.7829 -4.5652 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260553915.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:08 Heat of formation + Delta-G solvation = -30.278876 kcal Electronic energy + Delta-G solvation = -18793.051668 eV Core-core repulsion = 15897.568363 eV Total energy + Delta-G solvation = -2895.483305 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.78590 -41.22750 -38.50743 -34.71157 -33.19477 -32.02162 -30.71501 -29.70050 -27.65580 -25.38399 -23.66177 -23.30510 -21.78182 -20.15778 -18.94567 -18.29133 -17.25039 -17.00796 -16.68538 -16.45003 -15.72741 -15.57681 -14.73240 -14.63250 -14.57664 -14.20425 -13.90696 -13.63023 -13.34431 -13.09705 -13.00007 -12.81240 -12.44951 -12.42979 -12.14050 -11.98061 -11.64943 -11.47875 -11.05617 -10.73557 -10.47651 -9.89965 -9.50002 -9.08798 -8.11211 -6.15241 0.36405 0.43756 1.34228 1.38545 1.45996 2.41777 2.77879 3.22822 3.39831 3.48567 3.86678 3.89596 4.06515 4.28192 4.43954 4.49752 4.54716 4.60732 4.77691 4.80378 4.90884 5.02637 5.07040 5.18167 5.22099 5.26383 5.31598 5.42143 5.49471 5.67090 5.68830 5.75718 5.89676 6.08199 6.17389 6.36229 6.60805 6.97122 7.52095 8.98838 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.015838 B = 0.011814 C = 0.007954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.439751 B = 2369.448226 C = 3519.294045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.133 3.867 3 C -0.036 4.036 4 C -0.101 4.101 5 C -0.151 4.151 6 C 0.057 3.943 7 F -0.151 7.151 8 C -0.152 4.152 9 C -0.098 4.098 10 N -0.662 5.662 11 C 0.045 3.955 12 C -0.126 4.126 13 C 0.036 3.964 14 H 0.009 0.991 15 C -0.510 4.510 16 H 0.073 0.927 17 C 0.018 3.982 18 N -0.921 5.921 19 Si 0.929 3.071 20 H -0.280 1.280 21 H -0.289 1.289 22 H -0.272 1.272 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.065 0.935 26 H 0.135 0.865 27 H 0.149 0.851 28 H 0.148 0.852 29 H 0.140 0.860 30 H 0.336 0.664 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.036 0.964 34 H 0.036 0.964 35 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.130 5.414 8.884 10.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.042 3.958 3 C -0.036 4.036 4 C -0.119 4.119 5 C -0.170 4.170 6 C 0.038 3.962 7 F -0.130 7.130 8 C -0.170 4.170 9 C -0.116 4.116 10 N -0.292 5.292 11 C -0.084 4.084 12 C -0.166 4.166 13 C 0.016 3.984 14 H 0.027 0.973 15 C -0.549 4.549 16 H 0.091 0.909 17 C -0.180 4.180 18 N -0.561 5.561 19 Si 0.757 3.243 20 H -0.206 1.206 21 H -0.215 1.215 22 H -0.196 1.196 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.152 0.848 27 H 0.166 0.834 28 H 0.166 0.834 29 H 0.157 0.843 30 H 0.155 0.845 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.732 5.243 9.096 10.849 hybrid contribution 1.714 0.491 -1.835 2.559 sum -1.017 5.734 7.261 9.308 Atomic orbital electron populations 1.21707 0.92968 1.01600 1.01315 1.20728 0.95656 0.89321 0.90070 1.19840 0.94161 0.94975 0.94667 1.20837 0.95514 0.95821 0.99748 1.21193 1.01222 0.92267 1.02283 1.17808 0.95526 0.79004 1.03838 1.91430 1.89041 1.37332 1.95211 1.21255 0.95594 0.98388 1.01795 1.21024 1.00936 0.91331 0.98330 1.63045 1.34078 1.02742 1.29323 1.23113 1.00247 0.90859 0.94197 1.22902 0.98704 0.98935 0.96044 1.19820 0.94365 0.92371 0.91841 0.97328 1.21817 1.28091 1.01742 1.03201 0.90919 1.25568 0.97783 0.95827 0.98868 1.70075 1.46256 1.19131 1.20636 0.85987 0.79931 0.80066 0.78355 1.20602 1.21476 1.19649 0.92420 0.92976 0.91583 0.84777 0.83356 0.83392 0.84259 0.84478 0.90728 0.89799 0.94557 0.94510 0.93533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.88 7.88 71.98 0.57 -3.32 16 2 C 0.13 4.91 1.00 2.93 0.00 4.91 16 3 C -0.04 -1.27 2.82 -19.86 -0.06 -1.33 16 4 C -0.10 -3.36 7.97 22.26 0.18 -3.18 16 5 C -0.15 -4.72 10.03 22.31 0.22 -4.50 16 6 C 0.06 1.86 7.30 22.37 0.16 2.02 16 7 F -0.15 -4.82 17.27 44.97 0.78 -4.04 16 8 C -0.15 -4.78 10.03 22.32 0.22 -4.55 16 9 C -0.10 -3.30 8.76 22.26 0.19 -3.10 16 10 N -0.66 -21.93 7.03 -462.77 -3.25 -25.18 16 11 C 0.05 1.52 7.54 86.65 0.65 2.17 16 12 C -0.13 -5.47 6.09 31.80 0.19 -5.28 16 13 C 0.04 1.65 2.42 -10.66 -0.03 1.62 16 14 H 0.01 0.45 7.68 -2.39 -0.02 0.43 16 15 C -0.51 -25.92 7.54 25.60 0.19 -25.73 16 16 H 0.07 3.62 4.61 -2.91 -0.01 3.61 16 17 C 0.02 0.96 5.37 84.65 0.46 1.42 16 18 N -0.92 -52.48 12.91 21.44 0.28 -52.21 16 19 Si 0.93 43.64 29.54 68.60 2.03 45.67 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 22 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 23 H 0.06 1.86 6.60 -2.39 -0.02 1.85 16 24 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.13 4.12 6.11 -2.91 -0.02 4.10 16 27 H 0.15 3.85 8.06 -2.91 -0.02 3.82 16 28 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 29 H 0.14 4.33 6.19 -2.92 -0.02 4.32 16 30 H 0.34 10.44 5.82 -89.70 -0.52 9.91 16 31 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 33 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.04 1.69 7.86 -2.39 -0.02 1.67 16 35 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -57.97 282.81 3.38 -54.59 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.58 Total: 20.00 kcal Atomic # 6 Polarization: -41.80 SS G_CDS: 2.97 Total: -38.83 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -2.98 Total: -77.39 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 0.78 Total: -4.04 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -57.97 3.38 -54.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260553915.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.311 kcal (2) G-P(sol) polarization free energy of solvation -57.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds