Wall clock time and date at job start Mon Mar 30 2020 06:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50690 * 110.06619 * 2 1 4 4 C 1.38244 * 119.97541 * 208.31347 * 3 2 1 5 5 C 1.38205 * 120.02696 * 179.76675 * 4 3 2 6 6 C 1.38461 * 119.97193 * 0.50910 * 5 4 3 7 7 F 1.35098 * 120.02226 * 179.77209 * 6 5 4 8 8 C 1.38456 * 119.95026 * 359.74532 * 6 5 4 9 9 C 1.38201 * 119.97192 * 0.02562 * 8 6 5 10 10 N 1.47897 * 109.91749 * 238.79400 * 2 1 3 11 11 C 1.48537 * 105.82272 * 265.97714 * 10 2 1 12 12 C 1.54940 * 103.22593 * 320.79490 * 11 10 2 13 13 C 1.53999 * 109.91723 * 121.20481 * 2 1 3 14 14 H 1.09002 * 110.30842 * 359.20953 * 13 2 1 15 15 C 1.50700 * 110.39057 * 237.08758 * 13 2 1 16 16 H 1.07998 * 120.00014 * 358.97600 * 15 13 2 17 17 C 1.37877 * 119.99558 * 178.97613 * 15 13 2 18 18 N 1.31510 * 120.00297 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99658 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47158 * 90.00322 * 19 17 15 21 21 H 1.48498 * 109.47203 * 209.99877 * 19 17 15 22 22 H 1.48501 * 109.47381 * 329.99898 * 19 17 15 23 23 H 1.09001 * 109.46992 * 179.75410 * 1 2 3 24 24 H 1.08997 * 109.47026 * 299.75053 * 1 2 3 25 25 H 1.08998 * 109.47003 * 59.75437 * 1 2 3 26 26 H 1.08001 * 119.98889 * 0.02562 * 4 3 2 27 27 H 1.07998 * 120.01085 * 180.25691 * 5 4 3 28 28 H 1.07998 * 120.01210 * 179.97438 * 8 6 5 29 29 H 1.08000 * 119.98489 * 180.02562 * 9 8 6 30 30 H 1.00900 * 111.00187 * 145.46874 * 10 2 1 31 31 H 1.09005 * 110.66585 * 79.22392 * 11 10 2 32 32 H 1.09001 * 110.67161 * 202.35672 * 11 10 2 33 33 H 1.08997 * 110.72397 * 155.76924 * 12 11 10 34 34 H 1.09000 * 110.72265 * 279.05766 * 12 11 10 35 35 H 0.97004 * 120.00074 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0470 1.4154 0.0000 4 6 3.2743 1.7025 -0.5680 5 6 3.7473 3.0010 -0.5729 6 6 2.9963 4.0130 0.0008 7 9 3.4598 5.2820 0.0007 8 6 1.7697 3.7235 0.5741 9 6 1.2966 2.4249 0.5735 10 7 2.0338 -0.7204 -1.1893 11 6 2.2660 -2.1193 -0.7472 12 6 2.8536 -1.9483 0.6763 13 6 2.0546 -0.7501 1.2384 14 1 1.2225 -1.1028 1.8478 15 6 2.9551 0.1438 2.0514 16 1 3.1588 1.1511 1.7192 17 6 3.5189 -0.3242 3.2193 18 7 3.2712 -1.5509 3.6236 19 14 4.6356 0.7837 4.2267 20 1 3.8235 1.5394 5.2139 21 1 5.6396 -0.0442 4.9421 22 1 5.3317 1.7366 3.3252 23 1 -0.3633 -1.0277 -0.0044 24 1 -0.3633 0.5099 0.8922 25 1 -0.3633 0.5176 -0.8878 26 1 3.8617 0.9124 -1.0118 27 1 4.7042 3.2257 -1.0203 28 1 1.1832 4.5119 1.0222 29 1 0.3396 2.1989 1.0202 30 1 2.8866 -0.3029 -1.5307 31 1 1.3275 -2.6725 -0.7120 32 1 2.9822 -2.6160 -1.4019 33 1 2.6803 -2.8424 1.2751 34 1 3.9172 -1.7145 0.6290 35 1 3.6676 -1.8800 4.4455 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260553926.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:13 Heat of formation + Delta-G solvation = -14.979447 kcal Electronic energy + Delta-G solvation = -18796.065135 eV Core-core repulsion = 15901.245263 eV Total energy + Delta-G solvation = -2894.819872 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.45318 -39.75950 -37.05751 -32.75304 -31.76118 -30.66149 -28.93796 -28.31534 -26.00220 -23.62847 -22.31813 -21.87532 -20.13480 -18.59171 -17.53657 -16.58769 -15.75246 -15.50315 -15.14670 -14.80518 -14.26552 -13.96046 -13.32424 -13.19247 -12.93885 -12.84107 -12.24439 -12.16517 -11.72790 -11.59292 -11.37166 -11.04211 -10.94963 -10.65722 -10.52794 -10.34323 -10.17173 -9.79645 -9.37479 -8.84956 -8.57686 -8.43715 -8.01094 -7.63305 -6.06822 -4.08593 1.73683 1.76812 3.27273 3.34661 3.39530 4.14604 4.40606 4.73493 4.94228 5.16826 5.27647 5.29751 5.32856 5.75041 5.77125 5.87806 6.01456 6.11368 6.24403 6.27514 6.32679 6.41610 6.50010 6.55812 6.61593 6.72223 6.80071 6.94553 7.10540 7.16994 7.39938 7.42289 7.53779 7.81979 7.94127 7.97572 8.35218 8.94722 9.57204 11.03115 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.011785 C = 0.007946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.060132 B = 2375.298862 C = 3523.084798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.128 3.872 3 C -0.016 4.016 4 C -0.089 4.089 5 C -0.150 4.150 6 C 0.068 3.932 7 F -0.152 7.152 8 C -0.151 4.151 9 C -0.090 4.090 10 N -0.672 5.672 11 C 0.032 3.968 12 C -0.127 4.127 13 C 0.041 3.959 14 H 0.039 0.961 15 C -0.517 4.517 16 H 0.070 0.930 17 C 0.066 3.934 18 N -0.889 5.889 19 Si 0.881 3.119 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.273 1.273 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.048 0.952 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.126 0.874 29 H 0.131 0.869 30 H 0.329 0.671 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.420 4.436 -7.478 9.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.037 3.963 3 C -0.017 4.017 4 C -0.108 4.108 5 C -0.169 4.169 6 C 0.049 3.951 7 F -0.131 7.131 8 C -0.170 4.170 9 C -0.108 4.108 10 N -0.302 5.302 11 C -0.097 4.097 12 C -0.167 4.167 13 C 0.021 3.979 14 H 0.057 0.943 15 C -0.555 4.555 16 H 0.088 0.912 17 C -0.136 4.136 18 N -0.527 5.527 19 Si 0.709 3.291 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.143 0.857 27 H 0.144 0.856 28 H 0.144 0.856 29 H 0.149 0.851 30 H 0.148 0.852 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.005 4.241 -7.689 9.281 hybrid contribution 1.746 0.787 1.462 2.409 sum -1.259 5.028 -6.228 8.102 Atomic orbital electron populations 1.21743 0.94327 1.01392 1.00470 1.20865 0.94528 0.89220 0.91642 1.19741 0.93339 0.95118 0.93507 1.20662 0.95542 0.95083 0.99466 1.20937 1.00378 0.92755 1.02857 1.17602 0.95014 0.78815 1.03702 1.91426 1.88938 1.37576 1.95177 1.20986 0.95439 0.98112 1.02473 1.20841 1.00448 0.91071 0.98443 1.63048 1.33835 1.03026 1.30272 1.23187 0.99508 0.90346 0.96698 1.23030 0.99758 1.00455 0.93415 1.19867 0.95554 0.91843 0.90592 0.94320 1.21467 1.28193 0.99426 1.06423 0.91175 1.24940 0.96411 0.94800 0.97406 1.69970 1.44281 1.15514 1.22905 0.86753 0.80876 0.80843 0.80643 1.20667 1.21348 1.19809 0.92813 0.92462 0.93276 0.85703 0.85649 0.85599 0.85129 0.85230 0.91480 0.92495 0.92023 0.92757 0.93143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 7.87 37.16 0.29 -1.79 16 2 C 0.13 2.44 1.00 -131.69 -0.13 2.31 16 3 C -0.02 -0.30 2.83 -104.62 -0.30 -0.60 16 4 C -0.09 -1.58 7.99 -39.59 -0.32 -1.90 16 5 C -0.15 -2.55 10.03 -39.51 -0.40 -2.95 16 6 C 0.07 1.18 7.30 -39.42 -0.29 0.89 16 7 F -0.15 -2.60 17.27 2.25 0.04 -2.56 16 8 C -0.15 -2.53 10.03 -39.51 -0.40 -2.93 16 9 C -0.09 -1.58 8.73 -39.59 -0.35 -1.92 16 10 N -0.67 -11.90 7.02 -97.62 -0.69 -12.58 16 11 C 0.03 0.57 7.54 -1.89 -0.01 0.55 16 12 C -0.13 -2.76 5.81 -24.87 -0.14 -2.91 16 13 C 0.04 0.94 2.49 -90.41 -0.22 0.72 16 14 H 0.04 0.99 7.69 -51.93 -0.40 0.59 16 15 C -0.52 -13.17 7.59 -34.44 -0.26 -13.43 16 16 H 0.07 1.78 4.61 -52.49 -0.24 1.54 16 17 C 0.07 1.78 5.35 -17.82 -0.10 1.69 16 18 N -0.89 -24.75 12.69 55.43 0.70 -24.05 16 19 Si 0.88 21.25 29.54 -169.99 -5.02 16.23 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.06 0.95 6.59 -51.93 -0.34 0.60 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.13 2.08 6.14 -52.49 -0.32 1.75 16 27 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 28 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 29 H 0.13 2.11 6.18 -52.49 -0.32 1.78 16 30 H 0.33 5.55 5.85 -39.29 -0.23 5.32 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.05 1.26 7.86 -51.93 -0.41 0.85 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 282.44 15.07 4.26 4.26 Total: -1.00 -27.48 282.44 -7.69 -35.17 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -4.36 Total: 5.81 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: -2.62 Total: -22.26 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.02 Total: -36.63 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.04 Total: -2.56 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.48 -7.69 -35.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260553926.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.186 kcal (2) G-P(sol) polarization free energy of solvation -27.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds