Wall clock time and date at job start Mon Mar 30 2020 06:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50690 * 110.06619 * 2 1 4 4 C 1.38244 * 119.97541 * 208.31347 * 3 2 1 5 5 C 1.38205 * 120.02696 * 179.76675 * 4 3 2 6 6 C 1.38461 * 119.97193 * 0.50910 * 5 4 3 7 7 F 1.35098 * 120.02226 * 179.77209 * 6 5 4 8 8 C 1.38456 * 119.95026 * 359.74532 * 6 5 4 9 9 C 1.38201 * 119.97192 * 0.02562 * 8 6 5 10 10 N 1.47897 * 109.91749 * 238.79400 * 2 1 3 11 11 C 1.48537 * 105.82272 * 265.97714 * 10 2 1 12 12 C 1.54940 * 103.22593 * 320.79490 * 11 10 2 13 13 C 1.53999 * 109.91723 * 121.20481 * 2 1 3 14 14 H 1.09002 * 110.30842 * 359.20953 * 13 2 1 15 15 C 1.50700 * 110.39057 * 237.08758 * 13 2 1 16 16 H 1.07998 * 120.00014 * 358.97600 * 15 13 2 17 17 C 1.37877 * 119.99558 * 178.97613 * 15 13 2 18 18 N 1.31510 * 120.00297 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99658 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47158 * 90.00322 * 19 17 15 21 21 H 1.48498 * 109.47203 * 209.99877 * 19 17 15 22 22 H 1.48501 * 109.47381 * 329.99898 * 19 17 15 23 23 H 1.09001 * 109.46992 * 179.75410 * 1 2 3 24 24 H 1.08997 * 109.47026 * 299.75053 * 1 2 3 25 25 H 1.08998 * 109.47003 * 59.75437 * 1 2 3 26 26 H 1.08001 * 119.98889 * 0.02562 * 4 3 2 27 27 H 1.07998 * 120.01085 * 180.25691 * 5 4 3 28 28 H 1.07998 * 120.01210 * 179.97438 * 8 6 5 29 29 H 1.08000 * 119.98489 * 180.02562 * 9 8 6 30 30 H 1.00900 * 111.00187 * 145.46874 * 10 2 1 31 31 H 1.09005 * 110.66585 * 79.22392 * 11 10 2 32 32 H 1.09001 * 110.67161 * 202.35672 * 11 10 2 33 33 H 1.08997 * 110.72397 * 155.76924 * 12 11 10 34 34 H 1.09000 * 110.72265 * 279.05766 * 12 11 10 35 35 H 0.97004 * 120.00074 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0470 1.4154 0.0000 4 6 3.2743 1.7025 -0.5680 5 6 3.7473 3.0010 -0.5729 6 6 2.9963 4.0130 0.0008 7 9 3.4598 5.2820 0.0007 8 6 1.7697 3.7235 0.5741 9 6 1.2966 2.4249 0.5735 10 7 2.0338 -0.7204 -1.1893 11 6 2.2660 -2.1193 -0.7472 12 6 2.8536 -1.9483 0.6763 13 6 2.0546 -0.7501 1.2384 14 1 1.2225 -1.1028 1.8478 15 6 2.9551 0.1438 2.0514 16 1 3.1588 1.1511 1.7192 17 6 3.5189 -0.3242 3.2193 18 7 3.2712 -1.5509 3.6236 19 14 4.6356 0.7837 4.2267 20 1 3.8235 1.5394 5.2139 21 1 5.6396 -0.0442 4.9421 22 1 5.3317 1.7366 3.3252 23 1 -0.3633 -1.0277 -0.0044 24 1 -0.3633 0.5099 0.8922 25 1 -0.3633 0.5176 -0.8878 26 1 3.8617 0.9124 -1.0118 27 1 4.7042 3.2257 -1.0203 28 1 1.1832 4.5119 1.0222 29 1 0.3396 2.1989 1.0202 30 1 2.8866 -0.3029 -1.5307 31 1 1.3275 -2.6725 -0.7120 32 1 2.9822 -2.6160 -1.4019 33 1 2.6803 -2.8424 1.2751 34 1 3.9172 -1.7145 0.6290 35 1 3.6676 -1.8800 4.4455 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260553926.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:13 Heat of formation + Delta-G solvation = -30.262812 kcal Electronic energy + Delta-G solvation = -18796.727872 eV Core-core repulsion = 15901.245263 eV Total energy + Delta-G solvation = -2895.482608 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.78676 -41.22673 -38.51153 -34.71722 -33.19377 -32.01620 -30.69900 -29.70140 -27.65605 -25.38495 -23.66066 -23.30272 -21.77971 -20.15919 -18.94253 -18.28179 -17.24003 -17.00709 -16.68798 -16.45031 -15.73715 -15.57339 -14.73897 -14.63185 -14.57395 -14.20750 -13.90995 -13.62754 -13.32455 -13.09436 -12.99003 -12.79236 -12.48190 -12.44075 -12.14881 -11.97564 -11.63828 -11.47230 -11.05054 -10.72877 -10.47703 -9.90235 -9.49892 -9.08812 -8.11079 -6.15344 0.36211 0.43696 1.34436 1.38549 1.45562 2.41702 2.77728 3.22819 3.39855 3.49081 3.86624 3.89574 4.06485 4.28575 4.44092 4.49343 4.54647 4.61585 4.77875 4.80856 4.90920 5.02796 5.07136 5.18209 5.22253 5.26394 5.31758 5.42287 5.50155 5.67581 5.70432 5.75886 5.90002 6.08027 6.17442 6.36117 6.60308 6.96684 7.52087 8.98694 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.015914 B = 0.011785 C = 0.007946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.060132 B = 2375.298862 C = 3523.084798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.133 3.867 3 C -0.036 4.036 4 C -0.099 4.099 5 C -0.152 4.152 6 C 0.058 3.942 7 F -0.151 7.151 8 C -0.151 4.151 9 C -0.099 4.099 10 N -0.662 5.662 11 C 0.044 3.956 12 C -0.122 4.122 13 C 0.036 3.964 14 H 0.006 0.994 15 C -0.511 4.511 16 H 0.073 0.927 17 C 0.018 3.982 18 N -0.919 5.919 19 Si 0.929 3.071 20 H -0.280 1.280 21 H -0.289 1.289 22 H -0.272 1.272 23 H 0.051 0.949 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.133 0.867 27 H 0.147 0.853 28 H 0.150 0.850 29 H 0.141 0.859 30 H 0.336 0.664 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.036 0.964 34 H 0.034 0.966 35 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.453 5.572 -8.667 10.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.042 3.958 3 C -0.037 4.037 4 C -0.118 4.118 5 C -0.171 4.171 6 C 0.039 3.961 7 F -0.130 7.130 8 C -0.169 4.169 9 C -0.117 4.117 10 N -0.292 5.292 11 C -0.085 4.085 12 C -0.162 4.162 13 C 0.016 3.984 14 H 0.024 0.976 15 C -0.549 4.549 16 H 0.091 0.909 17 C -0.180 4.180 18 N -0.560 5.560 19 Si 0.756 3.244 20 H -0.206 1.206 21 H -0.215 1.215 22 H -0.196 1.196 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.151 0.849 27 H 0.165 0.835 28 H 0.168 0.832 29 H 0.159 0.841 30 H 0.155 0.845 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.036 5.393 -8.891 10.833 hybrid contribution 1.750 0.474 1.815 2.565 sum -1.286 5.867 -7.076 9.282 Atomic orbital electron populations 1.21709 0.92914 1.01612 1.01367 1.20726 0.95672 0.89327 0.90048 1.19834 0.94139 0.94986 0.94726 1.20822 0.95456 0.95794 0.99688 1.21191 1.01188 0.92302 1.02396 1.17804 0.95414 0.79001 1.03914 1.91430 1.88941 1.37451 1.95179 1.21255 0.95426 0.98423 1.01836 1.21041 1.00963 0.91302 0.98401 1.63066 1.34156 1.02744 1.29225 1.23135 1.00229 0.90840 0.94321 1.22849 0.98576 0.98914 0.95834 1.19818 0.94273 0.92431 0.91856 0.97577 1.21818 1.27285 0.99710 1.06132 0.90929 1.25565 0.97956 0.95739 0.98773 1.70081 1.45733 1.16847 1.23309 0.85989 0.79473 0.79423 0.79466 1.20603 1.21504 1.19626 0.92979 0.92339 0.91561 0.84945 0.83513 0.83246 0.84117 0.84540 0.90691 0.89894 0.94479 0.94672 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.87 7.87 71.98 0.57 -3.30 16 2 C 0.13 4.91 1.00 2.92 0.00 4.92 16 3 C -0.04 -1.28 2.83 -19.86 -0.06 -1.34 16 4 C -0.10 -3.34 7.99 22.26 0.18 -3.16 16 5 C -0.15 -4.80 10.03 22.32 0.22 -4.58 16 6 C 0.06 1.87 7.30 22.37 0.16 2.03 16 7 F -0.15 -4.80 17.27 44.97 0.78 -4.02 16 8 C -0.15 -4.69 10.03 22.31 0.22 -4.46 16 9 C -0.10 -3.29 8.73 22.26 0.19 -3.09 16 10 N -0.66 -22.08 7.02 -462.77 -3.25 -25.33 16 11 C 0.04 1.50 7.54 86.65 0.65 2.15 16 12 C -0.12 -5.34 5.81 31.80 0.18 -5.15 16 13 C 0.04 1.66 2.49 -10.66 -0.03 1.63 16 14 H 0.01 0.32 7.69 -2.39 -0.02 0.30 16 15 C -0.51 -26.00 7.59 25.60 0.19 -25.80 16 16 H 0.07 3.62 4.61 -2.91 -0.01 3.61 16 17 C 0.02 0.98 5.35 84.66 0.45 1.43 16 18 N -0.92 -52.30 12.69 21.45 0.27 -52.03 16 19 Si 0.93 43.63 29.54 68.60 2.03 45.66 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 22 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 23 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.06 1.86 6.59 -2.39 -0.02 1.85 16 25 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 26 H 0.13 4.15 6.14 -2.91 -0.02 4.13 16 27 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 28 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 29 H 0.14 4.29 6.18 -2.91 -0.02 4.27 16 30 H 0.34 10.54 5.85 -89.69 -0.52 10.02 16 31 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 32 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.03 1.63 7.86 -2.39 -0.02 1.61 16 35 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -57.84 282.44 3.36 -54.48 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.58 Total: 19.96 kcal Atomic # 6 Polarization: -41.68 SS G_CDS: 2.95 Total: -38.73 kcal Atomic # 7 Polarization: -74.37 SS G_CDS: -2.98 Total: -77.35 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.78 Total: -4.02 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -57.84 3.36 -54.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260553926.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.222 kcal (2) G-P(sol) polarization free energy of solvation -57.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds