Wall clock time and date at job start Mon Mar 30 2020 06:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50695 * 110.06539 * 2 1 4 4 C 1.38239 * 119.97397 * 90.93499 * 3 2 1 5 5 C 1.38198 * 120.02852 * 179.72604 * 4 3 2 6 6 C 1.38462 * 119.97065 * 0.56282 * 5 4 3 7 7 F 1.35098 * 120.02887 * 179.68328 * 6 5 4 8 8 C 1.38462 * 119.95039 * 359.71130 * 6 5 4 9 9 C 1.38200 * 119.97046 * 359.97438 * 8 6 5 10 10 N 1.48124 * 109.94450 * 238.67278 * 2 1 3 11 11 C 1.48532 * 105.87078 * 265.95176 * 10 2 1 12 12 C 1.54943 * 103.22458 * 320.83378 * 11 10 2 13 13 C 1.53997 * 109.91402 * 121.20852 * 2 1 3 14 14 H 1.09009 * 110.30379 * 237.13982 * 13 2 1 15 15 C 1.50695 * 110.30914 * 359.20844 * 13 2 1 16 16 H 1.07995 * 120.00496 * 358.61547 * 15 13 2 17 17 C 1.37880 * 119.99572 * 178.61480 * 15 13 2 18 18 N 1.31511 * 120.00327 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99951 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47297 * 59.99744 * 19 17 15 21 21 H 1.48503 * 109.47261 * 299.99924 * 19 17 15 22 22 H 1.48500 * 109.47454 * 179.97438 * 19 17 15 23 23 H 1.08995 * 109.47257 * 298.79047 * 1 2 3 24 24 H 1.08997 * 109.46974 * 58.79554 * 1 2 3 25 25 H 1.09002 * 109.46811 * 178.79652 * 1 2 3 26 26 H 1.08001 * 119.98987 * 359.97412 * 4 3 2 27 27 H 1.07999 * 120.01899 * 180.29498 * 5 4 3 28 28 H 1.07994 * 120.01338 * 180.02562 * 8 6 5 29 29 H 1.08005 * 119.98520 * 179.97438 * 9 8 6 30 30 H 1.00901 * 110.94663 * 145.43794 * 10 2 1 31 31 H 1.08994 * 110.66811 * 202.39703 * 11 10 2 32 32 H 1.09002 * 110.81015 * 79.32809 * 11 10 2 33 33 H 1.09004 * 110.71580 * 279.05373 * 12 11 10 34 34 H 1.08993 * 110.87435 * 155.84289 * 12 11 10 35 35 H 0.97006 * 119.99995 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0470 1.4155 0.0000 4 6 2.3024 2.0575 1.1973 5 6 2.7819 3.3536 1.1986 6 6 2.9956 4.0132 0.0001 7 9 3.4582 5.2825 0.0000 8 6 2.7341 3.3712 -1.1985 9 6 2.2608 2.0728 -1.1973 10 7 2.0353 -0.7239 -1.1894 11 6 2.2687 -2.1219 -0.7452 12 6 2.8551 -1.9483 0.6784 13 6 2.0545 -0.7502 1.2384 14 1 2.7049 -0.1021 1.8259 15 6 0.9041 -1.2377 2.0807 16 1 -0.1117 -1.0193 1.7860 17 6 1.1483 -1.9627 3.2279 18 7 2.3852 -2.2283 3.5871 19 14 -0.2778 -2.5677 4.2718 20 1 -1.1416 -3.4617 3.4594 21 1 -1.0733 -1.4060 4.7441 22 1 0.2477 -3.3167 5.4414 23 1 -0.3633 0.4949 0.9006 24 1 -0.3633 0.5324 -0.8790 25 1 -0.3633 -1.0275 -0.0216 26 1 2.1308 1.5446 2.1322 27 1 2.9858 3.8534 2.1340 28 1 2.9008 3.8845 -2.1339 29 1 2.0564 1.5718 -2.1321 30 1 2.8878 -0.3060 -1.5309 31 1 2.9857 -2.6186 -1.3988 32 1 1.3321 -2.6786 -0.7101 33 1 3.9185 -1.7135 0.6313 34 1 2.6849 -2.8410 1.2801 35 1 3.1258 -1.9144 3.0448 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260555849.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:16 Heat of formation + Delta-G solvation = -31.873035 kcal Electronic energy + Delta-G solvation = -18533.738801 eV Core-core repulsion = 15638.186369 eV Total energy + Delta-G solvation = -2895.552433 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.90071 -41.24878 -38.82679 -35.01488 -33.19310 -32.22783 -30.48109 -29.95439 -26.79647 -26.01260 -24.07295 -23.41414 -21.65140 -20.54894 -18.86625 -18.42123 -17.74010 -17.02170 -16.59795 -16.13643 -15.67051 -15.54803 -15.23408 -14.70642 -14.48916 -14.32818 -14.12765 -13.89892 -13.40470 -13.06841 -12.98123 -12.61020 -12.29347 -12.09058 -12.03766 -11.94408 -11.87526 -11.81146 -11.17990 -10.41673 -10.27939 -10.04677 -9.52708 -9.50530 -8.46234 -6.19804 0.14648 0.27225 1.54985 1.60913 1.78732 2.59368 2.62462 3.25185 3.28610 3.30369 3.73042 3.84103 3.96331 4.17497 4.30190 4.38461 4.41649 4.46029 4.64764 4.74945 4.88579 4.96128 4.98884 5.06299 5.13993 5.15096 5.20063 5.32380 5.40922 5.49451 5.56777 5.60955 5.90887 5.94449 6.24697 6.33738 6.56854 6.77590 7.58603 8.89749 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.025557 B = 0.007246 C = 0.006388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.334470 B = 3863.048929 C = 4382.024743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.147 3.853 3 C -0.091 4.091 4 C -0.094 4.094 5 C -0.158 4.158 6 C 0.079 3.921 7 F -0.145 7.145 8 C -0.145 4.145 9 C -0.081 4.081 10 N -0.656 5.656 11 C 0.060 3.940 12 C -0.152 4.152 13 C 0.012 3.988 14 H 0.004 0.996 15 C -0.594 4.594 16 H 0.070 0.930 17 C -0.031 4.031 18 N -0.944 5.944 19 Si 1.102 2.898 20 H -0.273 1.273 21 H -0.274 1.274 22 H -0.293 1.293 23 H 0.046 0.954 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.116 0.884 27 H 0.142 0.858 28 H 0.163 0.837 29 H 0.156 0.844 30 H 0.337 0.663 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.034 0.966 34 H 0.044 0.956 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.187 8.172 -9.844 12.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 C -0.092 4.092 4 C -0.112 4.112 5 C -0.176 4.176 6 C 0.060 3.940 7 F -0.124 7.124 8 C -0.164 4.164 9 C -0.099 4.099 10 N -0.284 5.284 11 C -0.069 4.069 12 C -0.192 4.192 13 C -0.007 4.007 14 H 0.022 0.978 15 C -0.632 4.632 16 H 0.088 0.912 17 C -0.229 4.229 18 N -0.583 5.583 19 Si 0.926 3.074 20 H -0.199 1.199 21 H -0.199 1.199 22 H -0.219 1.219 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.134 0.866 27 H 0.160 0.840 28 H 0.180 0.820 29 H 0.174 0.826 30 H 0.153 0.847 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.208 7.273 -8.839 11.510 hybrid contribution 1.578 0.879 -0.092 1.808 sum 0.369 8.152 -8.931 12.098 Atomic orbital electron populations 1.21502 0.93003 1.00931 0.99600 1.20471 0.95815 0.88541 0.89517 1.20247 0.98956 0.96330 0.93677 1.21065 0.97474 0.93918 0.98769 1.21226 1.02951 0.95412 0.98036 1.17817 1.01253 0.79874 0.95097 1.91464 1.86602 1.36860 1.97491 1.21363 1.01853 0.95662 0.97517 1.21093 0.97078 0.93500 0.98240 1.62990 1.33562 1.02445 1.29357 1.22876 0.99931 0.90931 0.93204 1.23142 0.97028 1.00775 0.98237 1.20137 0.94877 0.92479 0.93237 0.97789 1.22654 0.94472 1.36605 1.09518 0.91215 1.26919 1.02375 0.95256 0.98395 1.70891 0.99545 1.46313 1.41511 0.83097 0.72645 0.76683 0.74950 1.19862 1.19936 1.21874 0.93508 0.92881 0.93260 0.86583 0.83996 0.81957 0.82606 0.84661 0.89610 0.91592 0.94772 0.93688 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.51 7.31 71.98 0.53 -2.98 16 2 C 0.15 5.56 0.97 2.88 0.00 5.56 16 3 C -0.09 -3.09 4.70 -19.86 -0.09 -3.18 16 4 C -0.09 -3.34 8.73 22.26 0.19 -3.14 16 5 C -0.16 -4.81 10.03 22.31 0.22 -4.59 16 6 C 0.08 2.20 7.30 22.38 0.16 2.36 16 7 F -0.15 -3.97 17.27 44.97 0.78 -3.19 16 8 C -0.15 -3.56 10.03 22.31 0.22 -3.33 16 9 C -0.08 -2.18 8.83 22.26 0.20 -1.99 16 10 N -0.66 -21.73 6.45 -462.31 -2.98 -24.71 16 11 C 0.06 2.16 7.54 86.65 0.65 2.81 16 12 C -0.15 -6.75 5.43 31.80 0.17 -6.57 16 13 C 0.01 0.57 1.70 -10.66 -0.02 0.56 16 14 H 0.00 0.22 5.55 -2.38 -0.01 0.20 16 15 C -0.59 -30.81 7.64 25.60 0.20 -30.61 16 16 H 0.07 3.53 4.70 -2.91 -0.01 3.51 16 17 C -0.03 -1.71 5.09 84.66 0.43 -1.28 16 18 N -0.94 -55.79 12.98 21.45 0.28 -55.51 16 19 Si 1.10 49.18 29.90 68.60 2.05 51.23 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 22 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 23 H 0.05 1.87 7.04 -2.39 -0.02 1.85 16 24 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.05 1.99 7.18 -2.39 -0.02 1.97 16 26 H 0.12 4.79 6.42 -2.91 -0.02 4.77 16 27 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 28 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 29 H 0.16 3.58 7.29 -2.91 -0.02 3.56 16 30 H 0.34 9.90 7.45 -89.69 -0.67 9.23 16 31 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.04 2.29 6.52 -2.39 -0.02 2.27 16 35 H 0.26 15.45 6.07 -92.70 -0.56 14.89 16 Total: -1.00 -59.18 280.13 3.64 -55.54 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.65 Total: 23.04 kcal Atomic # 6 Polarization: -49.27 SS G_CDS: 2.87 Total: -46.39 kcal Atomic # 7 Polarization: -77.52 SS G_CDS: -2.70 Total: -80.22 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.78 Total: -3.19 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 2.05 Total: 51.23 kcal Total: -59.18 3.64 -55.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260555849.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.665 kcal (2) G-P(sol) polarization free energy of solvation -59.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds