Wall clock time and date at job start Mon Mar 30 2020 06:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 109.90407 * 2 1 4 4 C 1.38247 * 119.97161 * 268.61572 * 3 2 1 5 5 C 1.38197 * 120.02428 * 179.76836 * 4 3 2 6 6 C 1.38467 * 119.97405 * 0.50980 * 5 4 3 7 7 F 1.35094 * 120.02775 * 179.76486 * 6 5 4 8 8 C 1.38456 * 119.94705 * 359.74949 * 6 5 4 9 9 C 1.38207 * 119.97633 * 359.97438 * 8 6 5 10 10 N 1.47896 * 110.07964 * 121.20592 * 2 1 3 11 11 C 1.48531 * 105.81888 * 94.11518 * 10 2 1 12 12 C 1.54937 * 103.22743 * 39.20689 * 11 10 2 13 13 C 1.53986 * 109.91541 * 238.89648 * 2 1 3 14 14 H 1.09005 * 110.30873 * 122.76027 * 13 2 1 15 15 C 1.50698 * 110.39842 * 0.63081 * 13 2 1 16 16 H 1.08006 * 119.99729 * 2.78727 * 15 13 2 17 17 C 1.37875 * 120.00143 * 182.77786 * 15 13 2 18 18 N 1.31506 * 120.00354 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 119.99796 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47416 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47122 * 120.00536 * 19 17 15 22 22 H 1.48506 * 109.46841 * 240.00347 * 19 17 15 23 23 H 1.08999 * 109.46957 * 181.10578 * 1 2 3 24 24 H 1.09001 * 109.47531 * 301.10344 * 1 2 3 25 25 H 1.09000 * 109.46795 * 61.10621 * 1 2 3 26 26 H 1.08003 * 119.98902 * 0.03028 * 4 3 2 27 27 H 1.08000 * 120.01804 * 180.25716 * 5 4 3 28 28 H 1.08000 * 120.01588 * 179.97438 * 8 6 5 29 29 H 1.07997 * 119.98739 * 180.02562 * 9 8 6 30 30 H 1.00902 * 111.00196 * 333.60183 * 10 2 1 31 31 H 1.09001 * 110.67185 * 280.76719 * 11 10 2 32 32 H 1.09004 * 110.66470 * 157.64296 * 11 10 2 33 33 H 1.09004 * 110.72418 * 80.94201 * 12 11 10 34 34 H 1.08998 * 110.72552 * 204.22479 * 12 11 10 35 35 H 0.97005 * 120.00731 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0431 1.4170 0.0000 4 6 2.3054 2.0565 -1.1972 5 6 2.7714 3.3575 -1.1986 6 6 2.9856 4.0170 0.0000 7 9 3.4456 5.2872 0.0000 8 6 2.7276 3.3736 1.1985 9 6 2.2562 2.0744 1.1973 10 7 2.0378 -0.7197 1.1881 11 6 2.2732 -2.1176 0.7447 12 6 2.8579 -1.9442 -0.6795 13 6 2.0546 -0.7479 -1.2396 14 1 2.7036 -0.0982 -1.8270 15 6 0.9056 -1.2382 -2.0824 16 1 -0.1101 -1.0038 -1.7997 17 6 1.1509 -1.9859 -3.2146 18 7 2.3876 -2.2716 -3.5588 19 14 -0.2734 -2.5930 -4.2597 20 1 -1.5548 -2.1395 -3.6617 21 1 -0.1478 -2.0451 -5.6341 22 1 -0.2500 -4.0769 -4.3143 23 1 -0.3633 -1.0275 0.0198 24 1 -0.3634 0.5309 0.8799 25 1 -0.3633 0.4966 -0.8998 26 1 2.1422 1.5406 -2.1319 27 1 2.9724 3.8585 -2.1341 28 1 2.8946 3.8867 2.1340 29 1 2.0545 1.5725 2.1321 30 1 1.3695 -0.6875 1.9434 31 1 1.3361 -2.6735 0.7109 32 1 2.9918 -2.6126 1.3980 33 1 3.9209 -1.7074 -0.6339 34 1 2.6862 -2.8384 -1.2786 35 1 2.5602 -2.7973 -4.3555 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260555853.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:21 Heat of formation + Delta-G solvation = -14.197453 kcal Electronic energy + Delta-G solvation = -18471.121909 eV Core-core repulsion = 15576.335947 eV Total energy + Delta-G solvation = -2894.785962 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.55561 -39.53448 -37.23375 -32.85153 -31.52905 -30.78313 -29.05496 -28.62825 -25.03791 -24.35686 -22.60940 -21.87578 -19.85878 -18.68324 -17.37600 -16.13025 -15.84968 -15.56023 -15.25222 -14.95013 -14.44770 -14.09616 -13.36207 -13.11857 -12.85355 -12.62739 -12.49809 -12.28913 -11.90300 -11.43856 -11.27313 -11.08145 -10.81316 -10.59691 -10.43169 -10.30796 -9.99776 -9.82210 -9.36514 -8.78250 -8.59568 -8.40719 -8.05363 -7.83669 -6.07998 -4.12851 1.61944 1.70005 3.23434 3.32971 3.34801 4.06467 4.36723 4.65329 4.90727 5.16929 5.23792 5.25083 5.47803 5.77105 5.83367 5.89057 6.00971 6.16224 6.18432 6.29167 6.35504 6.43739 6.52953 6.60118 6.65183 6.78207 6.85564 7.03566 7.14611 7.28341 7.36907 7.58335 7.60910 7.80594 7.89776 8.03262 8.37616 8.89428 9.52612 10.99697 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.025567 B = 0.007198 C = 0.006352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.902598 B = 3889.254668 C = 4407.311063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.130 3.870 3 C -0.048 4.048 4 C -0.080 4.080 5 C -0.158 4.158 6 C 0.075 3.925 7 F -0.151 7.151 8 C -0.164 4.164 9 C -0.077 4.077 10 N -0.666 5.666 11 C 0.041 3.959 12 C -0.102 4.102 13 C 0.052 3.948 14 H 0.041 0.959 15 C -0.524 4.524 16 H 0.072 0.928 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.885 3.115 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.285 1.285 23 H 0.063 0.937 24 H 0.028 0.972 25 H 0.069 0.931 26 H 0.147 0.853 27 H 0.128 0.872 28 H 0.125 0.875 29 H 0.129 0.871 30 H 0.320 0.680 31 H 0.035 0.965 32 H 0.059 0.941 33 H 0.036 0.964 34 H 0.082 0.918 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.078 6.062 7.323 9.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.040 3.960 3 C -0.049 4.049 4 C -0.098 4.098 5 C -0.177 4.177 6 C 0.056 3.944 7 F -0.130 7.130 8 C -0.183 4.183 9 C -0.095 4.095 10 N -0.294 5.294 11 C -0.087 4.087 12 C -0.140 4.140 13 C 0.033 3.967 14 H 0.059 0.941 15 C -0.562 4.562 16 H 0.090 0.910 17 C -0.138 4.138 18 N -0.523 5.523 19 Si 0.713 3.287 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 H 0.082 0.918 24 H 0.047 0.953 25 H 0.088 0.912 26 H 0.165 0.835 27 H 0.146 0.854 28 H 0.143 0.857 29 H 0.146 0.854 30 H 0.134 0.866 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.101 0.899 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.253 6.237 7.154 9.495 hybrid contribution -1.476 -0.531 -0.721 1.726 sum -1.729 5.706 6.433 8.771 Atomic orbital electron populations 1.22319 0.95551 1.01791 1.00379 1.20668 0.92682 0.89559 0.93131 1.20036 0.96731 0.95823 0.92348 1.21295 0.95963 0.92864 0.99723 1.21107 1.03826 0.96141 0.96619 1.17702 1.02015 0.79694 0.94975 1.91433 1.86883 1.37193 1.97518 1.21018 1.04436 0.96387 0.96455 1.20826 0.97544 0.92525 0.98645 1.63127 1.46723 1.12044 1.07473 1.22990 0.98750 0.88839 0.98152 1.22409 0.97047 1.02233 0.92317 1.19648 0.95170 0.92354 0.89529 0.94095 1.21605 0.93309 1.33224 1.08087 0.91049 1.24985 0.95272 0.96130 0.97460 1.69989 1.18391 1.38666 1.25282 0.86642 0.82915 0.78577 0.80517 1.19824 1.21066 1.21122 0.91789 0.95252 0.91248 0.83520 0.85387 0.85708 0.85354 0.86565 0.94652 0.92219 0.94490 0.89942 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 6.94 37.16 0.26 -2.32 16 2 C 0.13 2.50 0.96 -131.69 -0.13 2.37 16 3 C -0.05 -0.88 4.85 -104.62 -0.51 -1.39 16 4 C -0.08 -1.46 8.74 -39.59 -0.35 -1.81 16 5 C -0.16 -2.59 10.03 -39.51 -0.40 -2.99 16 6 C 0.08 1.21 7.30 -39.42 -0.29 0.92 16 7 F -0.15 -2.39 17.27 2.25 0.04 -2.35 16 8 C -0.16 -2.48 10.03 -39.51 -0.40 -2.88 16 9 C -0.08 -1.23 9.33 -39.59 -0.37 -1.60 16 10 N -0.67 -11.82 6.02 -97.63 -0.59 -12.41 16 11 C 0.04 0.78 7.54 -1.90 -0.01 0.77 16 12 C -0.10 -2.30 6.12 -24.87 -0.15 -2.45 16 13 C 0.05 1.19 2.07 -90.42 -0.19 1.00 16 14 H 0.04 1.03 5.67 -51.93 -0.29 0.74 16 15 C -0.52 -12.98 7.66 -34.44 -0.26 -13.25 16 16 H 0.07 1.73 4.72 -52.48 -0.25 1.48 16 17 C 0.06 1.64 5.08 -17.82 -0.09 1.55 16 18 N -0.89 -24.04 11.90 55.43 0.66 -23.38 16 19 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H 0.06 1.21 7.20 -51.93 -0.37 0.84 16 24 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.07 1.32 7.03 -51.93 -0.37 0.96 16 26 H 0.15 2.87 6.39 -52.48 -0.34 2.54 16 27 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 28 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.13 1.86 7.47 -52.49 -0.39 1.46 16 30 H 0.32 4.93 8.42 -39.29 -0.33 4.60 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 2.07 6.53 -51.93 -0.34 1.73 16 35 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 283.12 15.07 4.27 4.27 Total: -1.00 -26.25 283.12 -7.87 -34.12 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -4.35 Total: 6.64 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: -2.88 Total: -22.07 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.07 Total: -35.78 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.35 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -26.25 -7.87 -34.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260555853.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.925 kcal (2) G-P(sol) polarization free energy of solvation -26.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds