Wall clock time and date at job start Mon Mar 30 2020 06:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50698 * 109.90407 * 2 1 4 4 C 1.38247 * 119.97161 * 268.61572 * 3 2 1 5 5 C 1.38197 * 120.02428 * 179.76836 * 4 3 2 6 6 C 1.38467 * 119.97405 * 0.50980 * 5 4 3 7 7 F 1.35094 * 120.02775 * 179.76486 * 6 5 4 8 8 C 1.38456 * 119.94705 * 359.74949 * 6 5 4 9 9 C 1.38207 * 119.97633 * 359.97438 * 8 6 5 10 10 N 1.47896 * 110.07964 * 121.20592 * 2 1 3 11 11 C 1.48531 * 105.81888 * 94.11518 * 10 2 1 12 12 C 1.54937 * 103.22743 * 39.20689 * 11 10 2 13 13 C 1.53986 * 109.91541 * 238.89648 * 2 1 3 14 14 H 1.09005 * 110.30873 * 122.76027 * 13 2 1 15 15 C 1.50698 * 110.39842 * 0.63081 * 13 2 1 16 16 H 1.08006 * 119.99729 * 2.78727 * 15 13 2 17 17 C 1.37875 * 120.00143 * 182.77786 * 15 13 2 18 18 N 1.31506 * 120.00354 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 119.99796 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47416 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47122 * 120.00536 * 19 17 15 22 22 H 1.48506 * 109.46841 * 240.00347 * 19 17 15 23 23 H 1.08999 * 109.46957 * 181.10578 * 1 2 3 24 24 H 1.09001 * 109.47531 * 301.10344 * 1 2 3 25 25 H 1.09000 * 109.46795 * 61.10621 * 1 2 3 26 26 H 1.08003 * 119.98902 * 0.03028 * 4 3 2 27 27 H 1.08000 * 120.01804 * 180.25716 * 5 4 3 28 28 H 1.08000 * 120.01588 * 179.97438 * 8 6 5 29 29 H 1.07997 * 119.98739 * 180.02562 * 9 8 6 30 30 H 1.00902 * 111.00196 * 333.60183 * 10 2 1 31 31 H 1.09001 * 110.67185 * 280.76719 * 11 10 2 32 32 H 1.09004 * 110.66470 * 157.64296 * 11 10 2 33 33 H 1.09004 * 110.72418 * 80.94201 * 12 11 10 34 34 H 1.08998 * 110.72552 * 204.22479 * 12 11 10 35 35 H 0.97005 * 120.00731 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0431 1.4170 0.0000 4 6 2.3054 2.0565 -1.1972 5 6 2.7714 3.3575 -1.1986 6 6 2.9856 4.0170 0.0000 7 9 3.4456 5.2872 0.0000 8 6 2.7276 3.3736 1.1985 9 6 2.2562 2.0744 1.1973 10 7 2.0378 -0.7197 1.1881 11 6 2.2732 -2.1176 0.7447 12 6 2.8579 -1.9442 -0.6795 13 6 2.0546 -0.7479 -1.2396 14 1 2.7036 -0.0982 -1.8270 15 6 0.9056 -1.2382 -2.0824 16 1 -0.1101 -1.0038 -1.7997 17 6 1.1509 -1.9859 -3.2146 18 7 2.3876 -2.2716 -3.5588 19 14 -0.2734 -2.5930 -4.2597 20 1 -1.5548 -2.1395 -3.6617 21 1 -0.1478 -2.0451 -5.6341 22 1 -0.2500 -4.0769 -4.3143 23 1 -0.3633 -1.0275 0.0198 24 1 -0.3634 0.5309 0.8799 25 1 -0.3633 0.4966 -0.8998 26 1 2.1422 1.5406 -2.1319 27 1 2.9724 3.8585 -2.1341 28 1 2.8946 3.8867 2.1340 29 1 2.0545 1.5725 2.1321 30 1 1.3695 -0.6875 1.9434 31 1 1.3361 -2.6735 0.7109 32 1 2.9918 -2.6126 1.3980 33 1 3.9209 -1.7074 -0.6339 34 1 2.6862 -2.8384 -1.2786 35 1 2.5602 -2.7973 -4.3555 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260555853.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:20 Heat of formation + Delta-G solvation = -28.277488 kcal Electronic energy + Delta-G solvation = -18471.732465 eV Core-core repulsion = 15576.335947 eV Total energy + Delta-G solvation = -2895.396518 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.80805 -40.99681 -38.67664 -34.74905 -32.99709 -32.13823 -30.76881 -30.05116 -26.75964 -26.02227 -23.93765 -23.29481 -21.53161 -20.25328 -18.68145 -17.92714 -17.33828 -17.04035 -16.56168 -16.49072 -16.13935 -15.48189 -14.86114 -14.37769 -14.32458 -14.21796 -14.04371 -13.87358 -13.37579 -13.00349 -12.92024 -12.76204 -12.46961 -12.23263 -12.05814 -11.78603 -11.71989 -11.58852 -11.01357 -10.62460 -10.38843 -9.91052 -9.42887 -9.26464 -8.06972 -6.15708 0.30739 0.42012 1.39723 1.44101 1.52290 2.44744 2.75610 3.24375 3.38233 3.44897 3.91375 4.03325 4.08389 4.25613 4.45715 4.53836 4.57132 4.62057 4.64544 4.82078 4.93528 5.02569 5.08282 5.22039 5.25985 5.29021 5.39737 5.43286 5.54576 5.68989 5.77184 5.87691 5.93466 6.06160 6.10619 6.47677 6.69820 6.95178 7.52324 9.00769 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.025567 B = 0.007198 C = 0.006352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.902598 B = 3889.254668 C = 4407.311063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.136 3.864 3 C -0.065 4.065 4 C -0.098 4.098 5 C -0.160 4.160 6 C 0.071 3.929 7 F -0.149 7.149 8 C -0.153 4.153 9 C -0.072 4.072 10 N -0.657 5.657 11 C 0.053 3.947 12 C -0.103 4.103 13 C 0.046 3.954 14 H 0.010 0.990 15 C -0.524 4.524 16 H 0.077 0.923 17 C 0.014 3.986 18 N -0.918 5.918 19 Si 0.942 3.058 20 H -0.264 1.264 21 H -0.288 1.288 22 H -0.286 1.286 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.120 0.880 27 H 0.140 0.860 28 H 0.157 0.843 29 H 0.151 0.849 30 H 0.340 0.660 31 H 0.036 0.964 32 H 0.082 0.918 33 H 0.023 0.977 34 H 0.051 0.949 35 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.967 7.022 9.546 12.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.046 3.954 3 C -0.066 4.066 4 C -0.117 4.117 5 C -0.179 4.179 6 C 0.052 3.948 7 F -0.127 7.127 8 C -0.171 4.171 9 C -0.090 4.090 10 N -0.286 5.286 11 C -0.076 4.076 12 C -0.142 4.142 13 C 0.027 3.973 14 H 0.028 0.972 15 C -0.562 4.562 16 H 0.095 0.905 17 C -0.184 4.184 18 N -0.558 5.558 19 Si 0.769 3.231 20 H -0.188 1.188 21 H -0.214 1.214 22 H -0.212 1.212 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.138 0.862 27 H 0.158 0.842 28 H 0.175 0.825 29 H 0.168 0.832 30 H 0.156 0.844 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.042 0.958 34 H 0.070 0.930 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.162 7.206 9.395 11.897 hybrid contribution -1.154 -0.765 -1.412 1.978 sum -2.316 6.441 7.983 10.516 Atomic orbital electron populations 1.22214 0.94713 1.01403 1.01100 1.20453 0.93250 0.89976 0.91767 1.20021 0.97943 0.95428 0.93242 1.21118 0.97780 0.93772 0.99018 1.21195 1.03375 0.95517 0.97796 1.17808 1.01934 0.79839 0.95200 1.91444 1.86820 1.36959 1.97514 1.21338 1.02557 0.95923 0.97312 1.20998 0.96832 0.92821 0.98373 1.63086 1.47360 1.10902 1.07300 1.22866 0.99034 0.89782 0.95948 1.22272 0.96506 1.00748 0.94646 1.19582 0.94319 0.92392 0.90982 0.97196 1.21965 0.94151 1.32037 1.08003 0.90470 1.25678 0.97106 0.96795 0.98863 1.70122 1.20146 1.39831 1.25732 0.85746 0.80744 0.77785 0.78832 1.18822 1.21414 1.21232 0.92740 0.92126 0.92816 0.86207 0.84177 0.82487 0.83154 0.84355 0.94547 0.89967 0.95789 0.93040 0.93447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.71 6.94 71.98 0.50 -4.21 16 2 C 0.14 5.09 0.96 2.92 0.00 5.09 16 3 C -0.07 -2.30 4.85 -19.86 -0.10 -2.40 16 4 C -0.10 -3.62 8.74 22.26 0.19 -3.43 16 5 C -0.16 -5.14 10.03 22.31 0.22 -4.92 16 6 C 0.07 2.13 7.30 22.38 0.16 2.29 16 7 F -0.15 -4.32 17.27 44.97 0.78 -3.55 16 8 C -0.15 -4.07 10.03 22.31 0.22 -3.85 16 9 C -0.07 -2.08 9.33 22.26 0.21 -1.87 16 10 N -0.66 -21.71 6.02 -462.80 -2.78 -24.49 16 11 C 0.05 1.91 7.54 86.65 0.65 2.57 16 12 C -0.10 -4.76 6.12 31.80 0.19 -4.57 16 13 C 0.05 2.17 2.07 -10.66 -0.02 2.14 16 14 H 0.01 0.53 5.67 -2.38 -0.01 0.52 16 15 C -0.52 -26.42 7.66 25.60 0.20 -26.23 16 16 H 0.08 3.74 4.72 -2.91 -0.01 3.73 16 17 C 0.01 0.75 5.08 84.66 0.43 1.18 16 18 N -0.92 -51.83 11.90 21.45 0.26 -51.58 16 19 Si 0.94 42.16 29.54 68.60 2.03 44.19 16 20 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 21 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 22 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 23 H 0.05 1.97 7.20 -2.39 -0.02 1.95 16 24 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 25 H 0.05 2.01 7.03 -2.39 -0.02 1.99 16 26 H 0.12 5.00 6.39 -2.91 -0.02 4.98 16 27 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 28 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 29 H 0.15 3.65 7.47 -2.91 -0.02 3.63 16 30 H 0.34 9.17 8.42 -89.69 -0.75 8.41 16 31 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 33 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.05 2.68 6.53 -2.39 -0.02 2.66 16 35 H 0.26 13.96 8.31 -92.70 -0.77 13.19 16 Total: -1.00 -57.12 283.12 3.50 -53.62 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.35 Total: 20.01 kcal Atomic # 6 Polarization: -41.07 SS G_CDS: 2.87 Total: -38.20 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -2.53 Total: -76.07 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.78 Total: -3.55 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -57.12 3.50 -53.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260555853.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.342 kcal (2) G-P(sol) polarization free energy of solvation -57.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds