Wall clock time and date at job start Mon Mar 30 2020 06:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.72889 * 2 1 4 4 C 1.54347 * 110.81971 * 236.38131 * 2 1 3 5 5 C 1.51375 * 105.16623 * 268.12477 * 4 2 1 6 6 C 1.38469 * 130.36188 * 162.83288 * 5 4 2 7 7 C 1.38329 * 120.19074 * 179.97438 * 6 5 4 8 8 F 1.35104 * 120.05408 * 179.97438 * 7 6 5 9 9 C 1.38471 * 119.88141 * 359.97438 * 7 6 5 10 10 C 1.38064 * 119.91022 * 359.97438 * 9 7 6 11 11 C 1.38225 * 109.76147 * 342.80472 * 5 4 2 12 12 C 1.51381 * 109.75174 * 0.02562 * 11 5 4 13 13 C 1.50703 * 110.30297 * 136.11275 * 12 11 5 14 14 H 1.07998 * 120.00274 * 358.75704 * 13 12 11 15 15 C 1.37883 * 119.99921 * 178.76468 * 13 12 11 16 16 N 1.31512 * 119.99854 * 11.17539 * 15 13 12 17 17 Si 1.86802 * 120.00016 * 191.17581 * 15 13 12 18 18 H 1.48502 * 109.46976 * 59.99372 * 17 15 13 19 19 H 1.48501 * 109.46686 * 299.99931 * 17 15 13 20 20 H 1.48490 * 109.47141 * 180.02562 * 17 15 13 21 21 C 1.52994 * 110.38619 * 258.22347 * 12 11 5 22 22 N 1.46903 * 109.47091 * 297.71257 * 21 12 11 23 23 H 1.09002 * 109.47072 * 305.40828 * 1 2 3 24 24 H 1.08995 * 109.47427 * 65.41097 * 1 2 3 25 25 H 1.08993 * 109.47007 * 185.41631 * 1 2 3 26 26 H 1.09003 * 110.30242 * 27.04937 * 4 2 1 27 27 H 1.09004 * 110.30116 * 149.20346 * 4 2 1 28 28 H 1.07993 * 119.90405 * 359.97438 * 6 5 4 29 29 H 1.08002 * 120.04317 * 180.02562 * 9 7 6 30 30 H 1.08004 * 119.87249 * 179.97438 * 10 9 7 31 31 H 0.96994 * 120.00383 * 4.21140 * 16 15 13 32 32 H 1.08994 * 109.47523 * 57.71529 * 21 12 11 33 33 H 1.09004 * 109.47374 * 177.72102 * 21 12 11 34 34 H 1.00901 * 111.00307 * 180.26120 * 22 21 12 35 35 H 1.00896 * 111.00143 * 304.22800 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0194 0.0000 4 6 2.0786 -0.7988 -1.2014 5 6 2.2640 -2.2103 -0.6870 6 6 2.4207 -3.4020 -1.3746 7 6 2.5772 -4.5892 -0.6822 8 9 2.7294 -5.7504 -1.3559 9 6 2.5776 -4.5854 0.7025 10 6 2.4224 -3.3969 1.3877 11 6 2.2642 -2.2078 0.6952 12 6 2.0782 -0.7943 1.2043 13 6 1.0876 -0.7735 2.3398 14 1 0.6126 -1.6894 2.6588 15 6 0.7875 0.4149 2.9712 16 7 1.1883 1.5549 2.4520 17 14 -0.1881 0.4059 4.5642 18 1 0.5503 -0.3704 5.5925 19 1 -1.5140 -0.2201 4.3289 20 1 -0.3768 1.8008 5.0370 21 6 3.4176 -0.2109 1.6586 22 7 3.9452 -1.0073 2.7746 23 1 -0.3633 0.5954 0.8376 24 1 -0.3634 0.4276 -0.9344 25 1 -0.3633 -1.0230 0.0970 26 1 1.3620 -0.7865 -2.0227 27 1 3.0338 -0.3858 -1.5256 28 1 2.4207 -3.4044 -2.4545 29 1 2.7000 -5.5108 1.2457 30 1 2.4224 -3.3946 2.4678 31 1 1.6414 1.5645 1.5945 32 1 4.1244 -0.2347 0.8292 33 1 3.2735 0.8195 1.9839 34 1 4.8281 -0.6393 3.0959 35 1 3.2781 -1.0579 3.5299 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260776707.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:00 Heat of formation + Delta-G solvation = -27.281574 kcal Electronic energy + Delta-G solvation = -18941.833545 eV Core-core repulsion = 16046.480213 eV Total energy + Delta-G solvation = -2895.353332 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.40704 -39.87777 -36.33291 -33.40710 -32.13511 -30.40791 -29.27435 -27.03167 -25.88099 -24.38659 -22.22824 -21.44371 -20.14738 -18.90149 -17.14081 -16.43817 -15.67275 -15.16162 -15.02392 -14.42567 -14.19930 -13.81817 -13.43776 -13.27872 -12.90668 -12.47125 -12.32643 -12.10239 -11.90998 -11.74109 -11.35811 -10.87300 -10.79162 -10.44798 -10.26573 -10.15435 -10.08211 -9.71164 -9.61476 -8.68664 -8.31681 -8.28601 -7.75599 -7.57251 -6.36475 -4.13776 1.85012 1.90961 3.35893 3.38761 3.55908 4.28628 4.43956 4.70089 5.13840 5.25509 5.37515 5.44912 5.60421 5.82066 5.86898 5.95780 6.01742 6.25048 6.30624 6.43928 6.51374 6.56577 6.63188 6.68248 6.73168 6.90611 6.93175 7.00830 7.15606 7.32595 7.43474 7.53944 7.60882 8.08171 8.19050 8.32603 8.47387 8.78855 9.51227 10.91961 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.026822 B = 0.008346 C = 0.007760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.667533 B = 3354.217226 C = 3607.431842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.083 4.083 3 H 0.068 0.932 4 C -0.079 4.079 5 C -0.089 4.089 6 C -0.152 4.152 7 C 0.068 3.932 8 F -0.154 7.154 9 C -0.164 4.164 10 C -0.058 4.058 11 C -0.025 4.025 12 C 0.097 3.903 13 C -0.573 4.573 14 H 0.052 0.948 15 C 0.028 3.972 16 N -0.909 5.909 17 Si 1.053 2.947 18 H -0.288 1.288 19 H -0.288 1.288 20 H -0.285 1.285 21 C 0.076 3.924 22 N -0.842 5.842 23 H 0.075 0.925 24 H 0.021 0.979 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.130 0.870 31 H 0.278 0.722 32 H 0.033 0.967 33 H 0.041 0.959 34 H 0.317 0.683 35 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.302 -4.736 -3.390 6.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.102 4.102 3 H 0.086 0.914 4 C -0.116 4.116 5 C -0.089 4.089 6 C -0.170 4.170 7 C 0.049 3.951 8 F -0.133 7.133 9 C -0.183 4.183 10 C -0.076 4.076 11 C -0.025 4.025 12 C 0.096 3.904 13 C -0.612 4.612 14 H 0.070 0.930 15 C -0.177 4.177 16 N -0.546 5.546 17 Si 0.882 3.118 18 H -0.214 1.214 19 H -0.215 1.215 20 H -0.210 1.210 21 C -0.056 4.056 22 N -0.371 5.371 23 H 0.094 0.906 24 H 0.040 0.960 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.137 0.863 29 H 0.142 0.858 30 H 0.147 0.853 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.126 0.874 35 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.713 -4.384 -2.746 5.449 hybrid contribution 0.568 -0.458 -0.865 1.132 sum 2.281 -4.842 -3.611 6.457 Atomic orbital electron populations 1.21524 0.94562 1.01419 0.99571 1.22023 0.96561 0.97895 0.93743 0.91360 1.21233 1.00342 0.91016 0.99045 1.20551 0.98981 0.94200 0.95151 1.20344 1.06204 0.90912 0.99582 1.17385 1.06503 0.81049 0.90203 1.91414 1.93805 1.47290 1.80759 1.20951 1.05905 0.99433 0.92019 1.20494 0.96572 0.90089 1.00405 1.20830 0.92944 0.96362 0.92369 1.18005 0.92842 0.86088 0.93481 1.21688 1.25894 0.96294 1.17285 0.92961 1.25578 0.97365 0.92118 1.02663 1.70837 1.36798 1.27150 1.19863 0.83755 0.76302 0.75870 0.75847 1.21431 1.21497 1.21031 1.21722 0.95404 0.95790 0.92634 1.58769 1.07320 1.57390 1.13641 0.90619 0.96041 0.93675 0.91778 0.91393 0.86322 0.85849 0.85259 0.90779 0.94816 0.94110 0.87388 0.83657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.40 8.04 37.16 0.30 -2.10 16 2 C -0.08 -1.71 2.03 -89.22 -0.18 -1.89 16 3 H 0.07 1.46 6.35 -51.93 -0.33 1.13 16 4 C -0.08 -1.44 6.30 -26.85 -0.17 -1.61 16 5 C -0.09 -1.72 6.14 -104.21 -0.64 -2.36 16 6 C -0.15 -2.73 10.02 -39.46 -0.40 -3.12 16 7 C 0.07 1.22 7.30 -39.46 -0.29 0.93 16 8 F -0.15 -2.67 17.27 2.25 0.04 -2.63 16 9 C -0.16 -2.93 10.03 -39.56 -0.40 -3.32 16 10 C -0.06 -1.13 9.32 -39.54 -0.37 -1.49 16 11 C -0.02 -0.52 4.66 -104.19 -0.49 -1.00 16 12 C 0.10 2.10 0.24 -155.78 -0.04 2.06 16 13 C -0.57 -13.69 5.29 -34.44 -0.18 -13.87 16 14 H 0.05 1.31 7.60 -52.49 -0.40 0.91 16 15 C 0.03 0.68 3.99 -17.82 -0.07 0.61 16 16 N -0.91 -23.55 11.90 55.43 0.66 -22.89 16 17 Si 1.05 22.82 29.92 -169.99 -5.09 17.73 16 18 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.29 -6.17 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 C 0.08 1.61 5.37 -3.83 -0.02 1.58 16 22 N -0.84 -16.37 9.04 -10.37 -0.09 -16.47 16 23 H 0.07 1.78 5.84 -51.93 -0.30 1.47 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.04 0.98 8.02 -51.93 -0.42 0.56 16 26 H 0.06 1.07 7.91 -51.93 -0.41 0.66 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 28 H 0.12 1.87 8.06 -52.49 -0.42 1.45 16 29 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.13 2.51 8.06 -52.48 -0.42 2.08 16 31 H 0.28 7.05 3.82 -40.82 -0.16 6.89 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.04 0.95 5.81 -51.93 -0.30 0.65 16 34 H 0.32 5.42 9.08 -39.29 -0.36 5.06 16 35 H 0.35 7.16 7.91 -39.29 -0.31 6.85 16 LS Contribution 279.10 15.07 4.21 4.21 Total: -1.00 -25.29 279.10 -7.53 -32.82 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -4.32 Total: 12.82 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: -2.94 Total: -25.58 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.57 Total: -39.36 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.09 Total: 17.73 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -25.29 -7.53 -32.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260776707.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.536 kcal (2) G-P(sol) polarization free energy of solvation -25.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds