Wall clock time and date at job start Mon Mar 30 2020 06:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.72889 * 2 1 4 4 C 1.54347 * 110.81971 * 236.38131 * 2 1 3 5 5 C 1.51375 * 105.16623 * 268.12477 * 4 2 1 6 6 C 1.38469 * 130.36188 * 162.83288 * 5 4 2 7 7 C 1.38329 * 120.19074 * 179.97438 * 6 5 4 8 8 F 1.35104 * 120.05408 * 179.97438 * 7 6 5 9 9 C 1.38471 * 119.88141 * 359.97438 * 7 6 5 10 10 C 1.38064 * 119.91022 * 359.97438 * 9 7 6 11 11 C 1.38225 * 109.76147 * 342.80472 * 5 4 2 12 12 C 1.51381 * 109.75174 * 0.02562 * 11 5 4 13 13 C 1.50703 * 110.30297 * 136.11275 * 12 11 5 14 14 H 1.07998 * 120.00274 * 358.75704 * 13 12 11 15 15 C 1.37883 * 119.99921 * 178.76468 * 13 12 11 16 16 N 1.31512 * 119.99854 * 11.17539 * 15 13 12 17 17 Si 1.86802 * 120.00016 * 191.17581 * 15 13 12 18 18 H 1.48502 * 109.46976 * 59.99372 * 17 15 13 19 19 H 1.48501 * 109.46686 * 299.99931 * 17 15 13 20 20 H 1.48490 * 109.47141 * 180.02562 * 17 15 13 21 21 C 1.52994 * 110.38619 * 258.22347 * 12 11 5 22 22 N 1.46903 * 109.47091 * 297.71257 * 21 12 11 23 23 H 1.09002 * 109.47072 * 305.40828 * 1 2 3 24 24 H 1.08995 * 109.47427 * 65.41097 * 1 2 3 25 25 H 1.08993 * 109.47007 * 185.41631 * 1 2 3 26 26 H 1.09003 * 110.30242 * 27.04937 * 4 2 1 27 27 H 1.09004 * 110.30116 * 149.20346 * 4 2 1 28 28 H 1.07993 * 119.90405 * 359.97438 * 6 5 4 29 29 H 1.08002 * 120.04317 * 180.02562 * 9 7 6 30 30 H 1.08004 * 119.87249 * 179.97438 * 10 9 7 31 31 H 0.96994 * 120.00383 * 4.21140 * 16 15 13 32 32 H 1.08994 * 109.47523 * 57.71529 * 21 12 11 33 33 H 1.09004 * 109.47374 * 177.72102 * 21 12 11 34 34 H 1.00901 * 111.00307 * 180.26120 * 22 21 12 35 35 H 1.00896 * 111.00143 * 304.22800 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0194 0.0000 4 6 2.0786 -0.7988 -1.2014 5 6 2.2640 -2.2103 -0.6870 6 6 2.4207 -3.4020 -1.3746 7 6 2.5772 -4.5892 -0.6822 8 9 2.7294 -5.7504 -1.3559 9 6 2.5776 -4.5854 0.7025 10 6 2.4224 -3.3969 1.3877 11 6 2.2642 -2.2078 0.6952 12 6 2.0782 -0.7943 1.2043 13 6 1.0876 -0.7735 2.3398 14 1 0.6126 -1.6894 2.6588 15 6 0.7875 0.4149 2.9712 16 7 1.1883 1.5549 2.4520 17 14 -0.1881 0.4059 4.5642 18 1 0.5503 -0.3704 5.5925 19 1 -1.5140 -0.2201 4.3289 20 1 -0.3768 1.8008 5.0370 21 6 3.4176 -0.2109 1.6586 22 7 3.9452 -1.0073 2.7746 23 1 -0.3633 0.5954 0.8376 24 1 -0.3634 0.4276 -0.9344 25 1 -0.3633 -1.0230 0.0970 26 1 1.3620 -0.7865 -2.0227 27 1 3.0338 -0.3858 -1.5256 28 1 2.4207 -3.4044 -2.4545 29 1 2.7000 -5.5108 1.2457 30 1 2.4224 -3.3946 2.4678 31 1 1.6414 1.5645 1.5945 32 1 4.1244 -0.2347 0.8292 33 1 3.2735 0.8195 1.9839 34 1 4.8281 -0.6393 3.0959 35 1 3.2781 -1.0579 3.5299 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260776707.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:59 Heat of formation + Delta-G solvation = -40.200317 kcal Electronic energy + Delta-G solvation = -18942.393744 eV Core-core repulsion = 16046.480213 eV Total energy + Delta-G solvation = -2895.913531 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.79210 -41.42500 -37.90276 -35.00174 -33.89978 -31.91212 -30.84466 -28.64769 -27.46796 -26.18124 -23.77151 -22.98047 -21.66348 -20.58567 -18.86314 -17.87620 -17.17231 -16.64836 -16.50723 -15.99869 -15.77710 -15.54295 -15.00893 -14.83392 -14.41167 -14.04804 -13.89076 -13.75215 -13.52472 -13.35570 -12.88953 -12.56648 -12.50075 -12.09646 -11.88271 -11.78232 -11.69854 -11.32342 -11.24877 -10.46968 -10.16924 -9.71843 -9.37631 -9.10563 -8.28439 -6.05524 0.39841 0.45436 1.60929 1.62527 1.81706 2.63401 2.83214 3.25561 3.34325 3.74987 3.84729 4.03796 4.09171 4.30203 4.38197 4.47003 4.50228 4.74102 4.78230 4.80430 4.92237 4.96290 5.09379 5.13435 5.26004 5.27354 5.34743 5.39552 5.59936 5.67483 5.74064 5.97831 6.12845 6.31118 6.41227 6.53291 6.84272 6.94239 7.63318 9.01039 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.026822 B = 0.008346 C = 0.007760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.667533 B = 3354.217226 C = 3607.431842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.084 4.084 3 H 0.056 0.944 4 C -0.072 4.072 5 C -0.096 4.096 6 C -0.149 4.149 7 C 0.066 3.934 8 F -0.148 7.148 9 C -0.160 4.160 10 C -0.069 4.069 11 C -0.050 4.050 12 C 0.091 3.909 13 C -0.566 4.566 14 H 0.035 0.965 15 C -0.004 4.004 16 N -0.934 5.934 17 Si 1.086 2.914 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.295 1.295 21 C 0.084 3.916 22 N -0.836 5.836 23 H 0.046 0.954 24 H 0.044 0.956 25 H 0.033 0.967 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.124 0.876 31 H 0.275 0.725 32 H 0.038 0.962 33 H 0.017 0.983 34 H 0.330 0.670 35 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.661 -5.956 -4.341 7.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.104 4.104 3 H 0.074 0.926 4 C -0.108 4.108 5 C -0.097 4.097 6 C -0.167 4.167 7 C 0.047 3.953 8 F -0.127 7.127 9 C -0.178 4.178 10 C -0.088 4.088 11 C -0.050 4.050 12 C 0.090 3.910 13 C -0.604 4.604 14 H 0.053 0.947 15 C -0.205 4.205 16 N -0.573 5.573 17 Si 0.912 3.088 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.221 1.221 21 C -0.047 4.047 22 N -0.365 5.365 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.102 0.898 27 H 0.101 0.899 28 H 0.162 0.838 29 H 0.166 0.834 30 H 0.142 0.858 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.035 0.965 34 H 0.141 0.859 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.088 -5.622 -3.699 7.046 hybrid contribution 0.471 -0.144 -0.589 0.768 sum 2.559 -5.766 -4.288 7.628 Atomic orbital electron populations 1.21397 0.95021 1.00176 0.99586 1.21934 0.96148 0.97502 0.94805 0.92567 1.21169 1.01452 0.89976 0.98251 1.20677 0.99234 0.95122 0.94633 1.20570 1.05006 0.90211 1.00930 1.17480 1.06107 0.81343 0.90355 1.91433 1.93707 1.46939 1.80606 1.21156 1.04674 0.99740 0.92253 1.20525 0.97378 0.90542 1.00308 1.20851 0.94707 0.96041 0.93395 1.18010 0.92380 0.87399 0.93219 1.21742 1.25723 0.95171 1.17792 0.94686 1.26309 0.97808 0.92037 1.04303 1.70885 1.38349 1.27784 1.20269 0.83304 0.75870 0.75332 0.74251 1.19982 1.21083 1.22113 1.21578 0.95501 0.94541 0.93117 1.58733 1.07700 1.56998 1.13078 0.93485 0.93701 0.94780 0.89846 0.89903 0.83796 0.83418 0.85827 0.91159 0.94348 0.96523 0.85883 0.84375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.37 8.04 71.98 0.58 -3.79 16 2 C -0.08 -3.44 2.03 -9.89 -0.02 -3.46 16 3 H 0.06 2.42 6.35 -2.39 -0.02 2.40 16 4 C -0.07 -2.45 6.30 30.52 0.19 -2.25 16 5 C -0.10 -3.53 6.14 -19.60 -0.12 -3.65 16 6 C -0.15 -4.89 10.02 22.35 0.22 -4.67 16 7 C 0.07 2.20 7.30 22.35 0.16 2.36 16 8 F -0.15 -4.67 17.27 44.97 0.78 -3.90 16 9 C -0.16 -5.31 10.03 22.28 0.22 -5.09 16 10 C -0.07 -2.63 9.32 22.29 0.21 -2.42 16 11 C -0.05 -2.01 4.66 -19.59 -0.09 -2.10 16 12 C 0.09 3.91 0.24 -53.01 -0.01 3.90 16 13 C -0.57 -27.22 5.29 25.60 0.14 -27.08 16 14 H 0.03 1.77 7.60 -2.91 -0.02 1.75 16 15 C 0.00 -0.17 3.99 84.66 0.34 0.16 16 16 N -0.93 -49.16 11.90 21.45 0.26 -48.91 16 17 Si 1.09 46.41 29.92 68.60 2.05 48.46 16 18 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 19 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 21 C 0.08 3.56 5.37 86.30 0.46 4.02 16 22 N -0.84 -32.11 9.04 -186.72 -1.69 -33.80 16 23 H 0.05 2.22 5.84 -2.39 -0.01 2.21 16 24 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.03 1.45 8.02 -2.39 -0.02 1.43 16 26 H 0.08 2.52 7.91 -2.39 -0.02 2.50 16 27 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 29 H 0.15 4.10 8.06 -2.91 -0.02 4.07 16 30 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 31 H 0.27 14.21 3.82 -92.71 -0.35 13.86 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.02 0.79 5.81 -2.38 -0.01 0.77 16 34 H 0.33 11.04 9.08 -89.69 -0.81 10.23 16 35 H 0.34 14.04 7.91 -89.70 -0.71 13.33 16 Total: -1.00 -52.82 279.10 3.69 -49.13 By element: Atomic # 1 Polarization: 33.07 SS G_CDS: 0.01 Total: 33.08 kcal Atomic # 6 Polarization: -46.35 SS G_CDS: 2.28 Total: -44.07 kcal Atomic # 7 Polarization: -81.27 SS G_CDS: -1.43 Total: -82.71 kcal Atomic # 9 Polarization: -4.67 SS G_CDS: 0.78 Total: -3.90 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.05 Total: 48.46 kcal Total: -52.82 3.69 -49.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260776707.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.930 kcal (2) G-P(sol) polarization free energy of solvation -52.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds