Wall clock time and date at job start Mon Mar 30 2020 06:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 110.73378 * 2 1 4 4 C 1.54348 * 110.82114 * 123.62111 * 2 1 3 5 5 C 1.51375 * 105.16991 * 91.86966 * 4 2 1 6 6 C 1.38458 * 130.36798 * 197.15533 * 5 4 2 7 7 C 1.38328 * 120.19740 * 179.73242 * 6 5 4 8 8 F 1.35097 * 120.06221 * 180.29193 * 7 6 5 9 9 C 1.38482 * 119.87700 * 0.58672 * 7 6 5 10 10 C 1.38054 * 119.90497 * 359.42684 * 9 7 6 11 11 C 1.38234 * 109.75901 * 17.19164 * 5 4 2 12 12 C 1.51387 * 109.74863 * 0.02562 * 11 5 4 13 13 C 1.50699 * 110.30093 * 223.87863 * 12 11 5 14 14 H 1.08005 * 120.00255 * 1.82076 * 13 12 11 15 15 C 1.37876 * 120.00007 * 181.81585 * 13 12 11 16 16 N 1.31511 * 119.99904 * 352.31268 * 15 13 12 17 17 Si 1.86800 * 119.99867 * 172.31074 * 15 13 12 18 18 H 1.48506 * 109.47159 * 90.00387 * 17 15 13 19 19 H 1.48507 * 109.47202 * 210.00336 * 17 15 13 20 20 H 1.48502 * 109.47254 * 330.00385 * 17 15 13 21 21 C 1.53000 * 110.30173 * 101.73195 * 12 11 5 22 22 N 1.46897 * 109.47259 * 65.26377 * 21 12 11 23 23 H 1.09002 * 109.47338 * 176.82336 * 1 2 3 24 24 H 1.09008 * 109.47217 * 296.82909 * 1 2 3 25 25 H 1.09000 * 109.47247 * 56.82246 * 1 2 3 26 26 H 1.08995 * 110.30055 * 210.79377 * 4 2 1 27 27 H 1.09002 * 110.30238 * 332.84609 * 4 2 1 28 28 H 1.07999 * 119.90148 * 0.04331 * 6 5 4 29 29 H 1.07997 * 120.04383 * 179.70461 * 9 7 6 30 30 H 1.08001 * 119.87398 * 180.25331 * 10 9 7 31 31 H 0.97000 * 119.99964 * 179.97438 * 16 15 13 32 32 H 1.09002 * 109.46817 * 185.26748 * 21 12 11 33 33 H 1.08999 * 109.46841 * 305.26082 * 21 12 11 34 34 H 1.00903 * 111.00012 * 180.02562 * 22 21 12 35 35 H 1.00898 * 111.00394 * 303.95058 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9158 1.0194 0.0000 4 6 2.0786 -0.7988 1.2013 5 6 2.2639 -2.2104 0.6870 6 6 2.4208 -3.4020 1.3745 7 6 2.5711 -4.5901 0.6822 8 9 2.7181 -5.7519 1.3557 9 6 2.5767 -4.5856 -0.7026 10 6 2.4205 -3.3972 -1.3877 11 6 2.2639 -2.2079 -0.6953 12 6 2.0792 -0.7941 -1.2043 13 6 1.0886 -0.7725 -2.3397 14 1 0.6058 -1.6865 -2.6527 15 6 0.7985 0.4142 -2.9790 16 7 1.2669 1.5480 -2.5050 17 14 -0.2597 0.4114 -4.5184 18 1 -1.6879 0.5551 -4.1376 19 1 0.1359 1.5445 -5.3930 20 1 -0.0683 -0.8676 -5.2483 21 6 3.4203 -0.2135 -1.6572 22 7 3.9132 -0.9670 -2.8179 23 1 -0.3634 -1.0261 -0.0569 24 1 -0.3634 0.4638 0.9171 25 1 -0.3634 0.5624 -0.8601 26 1 3.0338 -0.3859 1.5255 27 1 1.3628 -0.7851 2.0233 28 1 2.4208 -3.4045 2.4545 29 1 2.6987 -5.5110 -1.2458 30 1 2.4209 -3.3948 -2.4677 31 1 1.0631 2.3828 -2.9550 32 1 3.2887 0.8330 -1.9325 33 1 4.1415 -0.2871 -0.8432 34 1 4.7988 -0.6027 -3.1359 35 1 3.9822 -1.9513 -2.6072 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260778265.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:03 Heat of formation + Delta-G solvation = -24.075134 kcal Electronic energy + Delta-G solvation = -18885.062631 eV Core-core repulsion = 15989.848341 eV Total energy + Delta-G solvation = -2895.214290 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.46662 -39.79478 -36.01224 -33.30234 -32.05567 -30.42975 -29.22608 -27.31704 -25.79911 -24.22492 -22.23804 -21.46671 -19.94628 -18.90996 -16.65170 -16.15753 -15.71280 -15.18920 -14.97204 -14.58263 -14.14229 -13.94595 -13.59856 -12.99044 -12.84526 -12.46480 -12.16031 -12.06987 -11.79329 -11.57582 -11.42843 -10.87970 -10.66082 -10.37997 -10.26227 -10.15255 -9.81741 -9.55178 -9.31576 -8.92747 -8.36621 -8.22042 -7.75329 -7.41116 -5.95038 -3.92988 1.77299 1.80607 3.35509 3.43214 3.48664 4.19397 4.51611 4.65966 5.14631 5.33208 5.37149 5.53957 5.67339 5.83368 5.92270 6.02333 6.06711 6.29187 6.42409 6.52935 6.54313 6.59524 6.74677 6.79273 6.81538 6.94757 7.07250 7.24046 7.45805 7.48886 7.55037 7.68106 7.76624 8.04027 8.21663 8.46179 8.51279 8.98196 9.67491 11.11806 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.026841 B = 0.008281 C = 0.007750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.946601 B = 3380.232768 C = 3612.177004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.061 4.061 3 H 0.079 0.921 4 C -0.086 4.086 5 C -0.081 4.081 6 C -0.150 4.150 7 C 0.068 3.932 8 F -0.153 7.153 9 C -0.162 4.162 10 C -0.082 4.082 11 C -0.051 4.051 12 C 0.112 3.888 13 C -0.470 4.470 14 H 0.053 0.947 15 C 0.077 3.923 16 N -0.888 5.888 17 Si 0.886 3.114 18 H -0.287 1.287 19 H -0.289 1.289 20 H -0.276 1.276 21 C 0.085 3.915 22 N -0.828 5.828 23 H 0.036 0.964 24 H 0.016 0.984 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.120 0.880 29 H 0.125 0.875 30 H 0.133 0.867 31 H 0.257 0.743 32 H 0.103 0.897 33 H -0.022 1.022 34 H 0.316 0.684 35 H 0.321 0.679 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.188 -5.089 4.844 7.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.080 4.080 3 H 0.098 0.902 4 C -0.123 4.123 5 C -0.081 4.081 6 C -0.169 4.169 7 C 0.049 3.951 8 F -0.132 7.132 9 C -0.181 4.181 10 C -0.100 4.100 11 C -0.051 4.051 12 C 0.111 3.889 13 C -0.508 4.508 14 H 0.071 0.929 15 C -0.124 4.124 16 N -0.527 5.527 17 Si 0.715 3.285 18 H -0.213 1.213 19 H -0.215 1.215 20 H -0.201 1.201 21 C -0.045 4.045 22 N -0.355 5.355 23 H 0.055 0.945 24 H 0.035 0.965 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.138 0.862 29 H 0.143 0.857 30 H 0.151 0.849 31 H 0.067 0.933 32 H 0.121 0.879 33 H -0.004 1.004 34 H 0.126 0.874 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.519 -4.670 4.460 6.932 hybrid contribution 0.313 -0.599 -0.071 0.680 sum 2.833 -5.269 4.389 7.420 Atomic orbital electron populations 1.21474 0.95180 1.00328 0.99638 1.21717 0.95961 0.98591 0.91768 0.90249 1.21372 1.00410 0.90783 0.99782 1.20657 0.97912 0.94456 0.95064 1.20429 1.05780 0.90928 0.99760 1.17412 1.06363 0.81076 0.90207 1.91420 1.93818 1.47185 1.80743 1.20962 1.05629 0.99401 0.92065 1.20644 0.98404 0.90418 1.00545 1.21395 0.93301 0.97372 0.93050 1.17898 0.93404 0.83967 0.93588 1.20582 1.22004 0.93790 1.14472 0.92896 1.24680 0.95782 0.95498 0.96450 1.69853 1.45914 0.97486 1.39458 0.86702 0.80087 0.77560 0.84165 1.21328 1.21540 1.20084 1.21816 0.93509 1.00900 0.88288 1.58652 1.32089 1.06012 1.38721 0.94523 0.96506 0.90395 0.91475 0.91877 0.86174 0.85703 0.84935 0.93262 0.87883 1.00361 0.87365 0.86715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.31 8.10 37.15 0.30 -2.01 16 2 C -0.06 -1.28 2.26 -89.21 -0.20 -1.48 16 3 H 0.08 1.77 7.67 -51.93 -0.40 1.37 16 4 C -0.09 -1.57 6.30 -26.85 -0.17 -1.74 16 5 C -0.08 -1.52 6.14 -104.21 -0.64 -2.16 16 6 C -0.15 -2.60 10.02 -39.47 -0.40 -3.00 16 7 C 0.07 1.18 7.30 -39.46 -0.29 0.89 16 8 F -0.15 -2.55 17.27 2.25 0.04 -2.51 16 9 C -0.16 -2.72 10.03 -39.56 -0.40 -3.11 16 10 C -0.08 -1.52 8.31 -39.55 -0.33 -1.85 16 11 C -0.05 -1.03 4.53 -104.19 -0.47 -1.50 16 12 C 0.11 2.46 0.25 -155.77 -0.04 2.42 16 13 C -0.47 -11.55 5.99 -34.44 -0.21 -11.76 16 14 H 0.05 1.36 7.59 -52.48 -0.40 0.96 16 15 C 0.08 1.93 3.91 -17.82 -0.07 1.86 16 16 N -0.89 -22.63 10.09 55.43 0.56 -22.07 16 17 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.09 1.84 5.39 -3.83 -0.02 1.82 16 22 N -0.83 -16.48 9.15 -10.37 -0.09 -16.57 16 23 H 0.04 0.78 8.09 -51.93 -0.42 0.36 16 24 H 0.02 0.31 8.14 -51.92 -0.42 -0.12 16 25 H 0.08 1.84 5.92 -51.93 -0.31 1.53 16 26 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.06 1.05 7.91 -51.93 -0.41 0.64 16 28 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.13 2.42 7.61 -52.49 -0.40 2.02 16 31 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 32 H 0.10 2.50 6.25 -51.93 -0.32 2.17 16 33 H -0.02 -0.45 8.14 -51.93 -0.42 -0.87 16 34 H 0.32 5.54 9.08 -39.29 -0.36 5.18 16 35 H 0.32 5.98 6.62 -39.29 -0.26 5.72 16 LS Contribution 281.48 15.07 4.24 4.24 Total: -1.00 -25.43 281.48 -7.73 -33.16 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -4.52 Total: 9.71 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -2.93 Total: -21.60 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.46 Total: -38.65 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.04 Total: -2.51 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -25.43 -7.73 -33.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260778265.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.082 kcal (2) G-P(sol) polarization free energy of solvation -25.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds